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Volumn 1246, Issue C, 2002, Pages 15-25

Genome biology of a model bacterium, Bacillus subtilis

Author keywords

Bacillus subtilis; Essential genes for bacterial growth; Gene array; Gene expression; Gene inactivation; Genome analysis

Indexed keywords


EID: 4544311971     PISSN: 05315131     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0531-5131(02)01126-3     Document Type: Article
Times cited : (3)

References (34)
  • 1
    • 85023095107 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/bact.html.
  • 2
    • 0036181778 scopus 로고    scopus 로고
    • Exploring prokaryotic diversity in the genome era
    • (reviews 0003.1–0003.8)
    • Hugenholz, P., Exploring prokaryotic diversity in the genome era. Genome Biol., 3, 2002 (reviews 0003.1–0003.8).
    • (2002) Genome Biol. , vol.3
    • Hugenholz, P.1
  • 3
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
    • Kunst, F., Ogasawara, N., Moszer, I., et al. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390 (1997), 249–256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1    Ogasawara, N.2    Moszer, I.3
  • 4
    • 85023036159 scopus 로고    scopus 로고
    • http://genolist.pasteur.fr/SubtiList/.
  • 5
    • 0037154430 scopus 로고    scopus 로고
    • Expression of a small RNA, BS203 RNA, from the yocI–yocJ intergenic region of Bacillus subtilis genome
    • Ando, Y., Asari, S., Suzuma, S., Yamane, K., Nakamura, K., Expression of a small RNA, BS203 RNA, from the yocI–yocJ intergenic region of Bacillus subtilis genome. FEMS Microbiol. Lett. 207 (2002), 29–33.
    • (2002) FEMS Microbiol. Lett. , vol.207 , pp. 29-33
    • Ando, Y.1    Asari, S.2    Suzuma, S.3    Yamane, K.4    Nakamura, K.5
  • 6
    • 0034096905 scopus 로고    scopus 로고
    • Systematic function analysis of Bacillus subtilis genes
    • Ogasawara, N., Systematic function analysis of Bacillus subtilis genes. Res. Microbiol. 151 (2000), 129–134.
    • (2000) Res. Microbiol. , vol.151 , pp. 129-134
    • Ogasawara, N.1
  • 7
    • 0031737309 scopus 로고    scopus 로고
    • A vector for systematic gene inactivation in Bacillus subtilis
    • Vagner, V., Dervyn, E., Ehrlich, S.D., A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144 (1998), 3097–3104.
    • (1998) Microbiology , vol.144 , pp. 3097-3104
    • Vagner, V.1    Dervyn, E.2    Ehrlich, S.D.3
  • 8
    • 85023083535 scopus 로고    scopus 로고
    • http://locus.jouy.inra.fr/cgi-bin/genmic/madbase/progs/madbase.operl.
  • 9
    • 85023152927 scopus 로고    scopus 로고
    • http://bacillus.genome.ad.jp/.
  • 11
    • 0029789824 scopus 로고    scopus 로고
    • A minimal gene set for cellular life derived by comparison of complete bacterial genomes
    • Mushegian, A.R., Koonin, E.V., A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. U. S. A. 93 (1996), 10268–10273.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 10268-10273
    • Mushegian, A.R.1    Koonin, E.V.2
  • 12
    • 0035110592 scopus 로고    scopus 로고
    • The complexity of simplicity
    • (comment 2002.1–2002.8)
    • Peterson, S.N., Fraser, C.N., The complexity of simplicity. Genome Biol., 2, 2001 (comment 2002.1–2002.8).
    • (2001) Genome Biol. , vol.2
    • Peterson, S.N.1    Fraser, C.N.2
  • 13
    • 0035079066 scopus 로고    scopus 로고
    • Loss of ribosomal protein L11 blocks stress activation of the Bacillus subtilis transcription factor sigma(B)
    • Zhang, S., Scott, J.M., Haldenwang, W.G., Loss of ribosomal protein L11 blocks stress activation of the Bacillus subtilis transcription factor sigma(B). J. Bacteriol. 183 (2001), 2316–2321.
    • (2001) J. Bacteriol. , vol.183 , pp. 2316-2321
    • Zhang, S.1    Scott, J.M.2    Haldenwang, W.G.3
  • 15
    • 0034460089 scopus 로고    scopus 로고
    • Terminal oxidases of Bacillus subtilis strain 168: one quinol oxidase, cytochrome aa(3) or cytochrome bd, is required for aerobic growth
    • Winstedt, L., von Wachenfeldt, C., Terminal oxidases of Bacillus subtilis strain 168: one quinol oxidase, cytochrome aa(3) or cytochrome bd, is required for aerobic growth. J. Bacteriol. 182 (2000), 6557–6564.
    • (2000) J. Bacteriol. , vol.182 , pp. 6557-6564
    • Winstedt, L.1    von Wachenfeldt, C.2
  • 16
    • 0036855348 scopus 로고    scopus 로고
    • Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis
    • (in press)
    • Morimoto, T., Loh, P.C., Hirai, T., Asai, K., Kobayashi, K., Moriya, S., Ogasawara, N., Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis. Microbiology, 2002 (in press).
    • (2002) Microbiology
    • Morimoto, T.1    Loh, P.C.2    Hirai, T.3    Asai, K.4    Kobayashi, K.5    Moriya, S.6    Ogasawara, N.7
  • 17
    • 0034018764 scopus 로고    scopus 로고
    • Systematic study of gene expression and transcription organization in the gntZ–ywaA region of the Bacillus subtilis genome
    • Yoshida, K., Ishio, I., Nagakawa, E., Yamamoto, Y., Yamamoto, M., Fujita, Y., Systematic study of gene expression and transcription organization in the gntZ–ywaA region of the Bacillus subtilis genome. Microbiology 146 (2000), 573–579.
    • (2000) Microbiology , vol.146 , pp. 573-579
    • Yoshida, K.1    Ishio, I.2    Nagakawa, E.3    Yamamoto, Y.4    Yamamoto, M.5    Fujita, Y.6
  • 18
    • 0001355855 scopus 로고    scopus 로고
    • RNA polymerase and sigma factors
    • A.L. Sonenshin J.A. Hoch R. Losick ASM Press Washington, DC
    • Helmann, J.D., Moran, C.P. Jr., RNA polymerase and sigma factors. Sonenshin, A.L., Hoch, J.A., Losick, R., (eds.) Bacillus subtilis and its Closest Relatives, 2002, ASM Press, Washington, DC, 289–312.
    • (2002) Bacillus subtilis and its Closest Relatives , pp. 289-312
    • Helmann, J.D.1    Moran, C.P.2
  • 22
    • 0034931152 scopus 로고    scopus 로고
    • Alkaline shock induces the Bacillus subtilis sigma(W) regulon
    • Wiegert, T., Homuth, G., Versteeg, S., Schumann, W., Alkaline shock induces the Bacillus subtilis sigma(W) regulon. Mol. Microbiol. 41 (2001), 59–71.
    • (2001) Mol. Microbiol. , vol.41 , pp. 59-71
    • Wiegert, T.1    Homuth, G.2    Versteeg, S.3    Schumann, W.4
  • 23
    • 0036307635 scopus 로고    scopus 로고
    • Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches
    • Cao, M., Kobel, P.A., Morshedi, M.M., Wu, M.F., Paddon, C., Helmann, J.D., Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches. J. Mol. Biol. 316 (2002), 443–457.
    • (2002) J. Mol. Biol. , vol.316 , pp. 443-457
    • Cao, M.1    Kobel, P.A.2    Morshedi, M.M.3    Wu, M.F.4    Paddon, C.5    Helmann, J.D.6
  • 24
  • 25
    • 0035253527 scopus 로고    scopus 로고
    • Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis
    • Yoshida, K., Kobayashi, K., et al. Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res. 29 (2001), 683–692.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 683-692
    • Yoshida, K.1    Kobayashi, K.2
  • 27
    • 0036229860 scopus 로고    scopus 로고
    • Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK
    • Ogura, M., Yamaguchi, H., Kobayashi, K., Ogasawara, N., Fujita, Y., Tanaka, T., Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J. Bacteriol. 184 (2002), 2344–2351.
    • (2002) J. Bacteriol. , vol.184 , pp. 2344-2351
    • Ogura, M.1    Yamaguchi, H.2    Kobayashi, K.3    Ogasawara, N.4    Fujita, Y.5    Tanaka, T.6
  • 28
    • 0036223585 scopus 로고    scopus 로고
    • Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis
    • Eymann, C., Homuth, G., Scharf, C., Hecker, M., Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis. J. Bacteriol. 184 (2002), 2500–2520.
    • (2002) J. Bacteriol. , vol.184 , pp. 2500-2520
    • Eymann, C.1    Homuth, G.2    Scharf, C.3    Hecker, M.4
  • 29
    • 0002654443 scopus 로고    scopus 로고
    • Two-component systems, phosphorelays, and regulation of their activities by phosphatases
    • A.L. Sonenshin J.A. Hoch R. Losick ASM Press Washington, DC
    • Perego, M., Hoch, J.A., Two-component systems, phosphorelays, and regulation of their activities by phosphatases. Sonenshin, A.L., Hoch, J.A., Losick, R., (eds.) Bacillus subtilis and its Closest Relatives, 2002, ASM Press, Washington, DC, 473–481.
    • (2002) Bacillus subtilis and its Closest Relatives , pp. 473-481
    • Perego, M.1    Hoch, J.A.2
  • 30
    • 0035883922 scopus 로고    scopus 로고
    • DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis of B. subtilis two-component regulatory systems
    • Ogura, M., Yamaguchi, H., Yoshida, K., Fujita, Y., Tanaka, T., DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis of B. subtilis two-component regulatory systems. Nucleic Acids Res. 29 (2001), 3804–3813.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3804-3813
    • Ogura, M.1    Yamaguchi, H.2    Yoshida, K.3    Fujita, Y.4    Tanaka, T.5
  • 31
    • 0035212494 scopus 로고    scopus 로고
    • Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems
    • Kobayashi, K., Ogura, M., Yamaguchi, H., Yoshida, K., Ogasawara, N., Tanaka, T., Fujita, Y., Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J. Bacteriol. 183 (2001), 7365–7370.
    • (2001) J. Bacteriol. , vol.183 , pp. 7365-7370
    • Kobayashi, K.1    Ogura, M.2    Yamaguchi, H.3    Yoshida, K.4    Ogasawara, N.5    Tanaka, T.6    Fujita, Y.7
  • 33
    • 85023006482 scopus 로고    scopus 로고
    • http://microbio2.biologie.uni-greifswald.de:8880/.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.