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Volumn 3, Issue 3, 2004, Pages 180-191

Hunting drug targets by systems-level modeling of gene expression profiles

Author keywords

Bayesian network; Gene regulatory networks; Interventional modeling; Oncogenes; Scale free networks

Indexed keywords

CELLS; COMPUTER SIMULATION; DNA; DRUG PRODUCTS; MATHEMATICAL MODELS; PROBLEM SOLVING; PROTEINS; STATISTICAL METHODS; TISSUE; TOPOLOGY;

EID: 4544310280     PISSN: 15361241     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNB.2004.833690     Document Type: Article
Times cited : (8)

References (36)
  • 1
    • 0023043847 scopus 로고
    • A turning point in cancer research: Sequencing the human genome
    • R. Dulbecco, "A turning point in cancer research: Sequencing the human genome," Science, vol. 231, pp. 1055-1056, 1986.
    • (1986) Science , vol.231 , pp. 1055-1056
    • Dulbecco, R.1
  • 2
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • D. Hanahan and R. A. Weinberg, "The hallmarks of cancer," Cell, vol. 100, pp. 57-70, 2000.
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 3
    • 0242569305 scopus 로고    scopus 로고
    • Large-scale computational modeling of genetic regulatory networks
    • M. Stetter, G. Deco, and M. Dejori, "Large-scale computational modeling of genetic regulatory networks," Artif. Intell. Rev., vol. 20, pp. 75-93, 2003.
    • (2003) Artif. Intell. Rev. , vol.20 , pp. 75-93
    • Stetter, M.1    Deco, G.2    Dejori, M.3
  • 5
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a cDNA microarray
    • M. Schena, D. Shalon, R. Davis, and P. O. Brown, "Quantitative monitoring of gene expression patterns with a cDNA microarray," Science, vol. 270, pp. 467-470, 1995.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.3    Brown, P.O.4
  • 6
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • P. O. Brown and D. Botstein, "Exploring the new world of the genome with DNA microarrays," Nature Genet., vol. 21, pp. 33-37, 1999.
    • (1999) Nature Genet. , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 7
    • 19044399684 scopus 로고    scopus 로고
    • Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
    • E.-J. Yeoh et al., "Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling," Cancer Cell, vol. 1, pp. 133-143, 2002.
    • (2002) Cancer Cell , vol.1 , pp. 133-143
    • Yeoh, E.-J.1
  • 9
    • 0041627900 scopus 로고    scopus 로고
    • Multiclass cancer classification using gene expression profiling and probabilistic neural networks
    • D. P. Berrar, C. S. Downes, and W. Dubitzky, "Multiclass cancer classification using gene expression profiling and probabilistic neural networks," in Proc. Pacific Symp. Biocomputing, 2003, pp. 5-16.
    • (2003) Proc. Pacific Symp. Biocomputing , pp. 5-16
    • Berrar, D.P.1    Downes, C.S.2    Dubitzky, W.3
  • 11
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • N. Friedman, M. Linial, I. Nachman, and D. Pe'er, "Using Bayesian networks to analyze expression data," J. Comput. Biol., vol. 7, pp. 601-620, 2000.
    • (2000) J. Comput. Biol. , vol.7 , pp. 601-620
    • Friedman, N.1    Linial, M.2    Nachman, I.3    Pe'er, D.4
  • 13
    • 37649030420 scopus 로고    scopus 로고
    • Range-based attacks on links in scale-free networks: Are long-range links responsible for the small-world phenomenon?
    • A. E. Motter, T. Nishikawa, and Y.-C. Lai, "Range-based attacks on links in scale-free networks: Are long-range links responsible for the small-world phenomenon?," Phys. Rev. E, vol. 66, p. 065 103, 2002.
    • (2002) Phys. Rev. E , vol.66 , pp. 065103
    • Motter, A.E.1    Nishikawa, T.2    Lai, Y.-C.3
  • 14
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • H. Jeong, B. Tombor, R. Albert, Z. Oltvai, and A. Barabasi, "The large-scale organization of metabolic networks," Nature, vol. 407, pp. 651-654, 2000.
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.4    Barabasi, A.5
  • 15
    • 4544243999 scopus 로고    scopus 로고
    • Identifying interventional and pathogenic mechanisms by generative inverse modeling of gene expression profiles
    • to be published
    • M. Dejori and M. Stetter, "Identifying interventional and pathogenic mechanisms by generative inverse modeling of gene expression profiles," J. Comput. Biology, 2004, to be published.
    • (2004) J. Comput. Biology
    • Dejori, M.1    Stetter, M.2
  • 16
    • 0242526935 scopus 로고    scopus 로고
    • RNA interference: On the road to an alternate therapeutic strategy!
    • R. S. Dave and R. J. Pomerantz, "RNA interference: On the road to an alternate therapeutic strategy!," Rev. Med. Virol, vol. 13, pp. 373-385, 2003.
    • (2003) Rev. Med. Virol , vol.13 , pp. 373-385
    • Dave, R.S.1    Pomerantz, R.J.2
  • 17
    • 0035221560 scopus 로고    scopus 로고
    • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
    • A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, and R. A. Young, "Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks," in Proc. 6th Pacific Symp. Biocomputing, 2001, pp. 422-433.
    • (2001) Proc. 6th Pacific Symp. Biocomputing , pp. 422-433
    • Hartemink, A.J.1    Gifford, D.K.2    Jaakkola, T.S.3    Young, R.A.4
  • 19
    • 34249761849 scopus 로고
    • Learning Bayesian networks: The combination of knowledge and statistical data
    • D. Heckerman, D. Geiger, and D. Chickering, "Learning Bayesian networks: The combination of knowledge and statistical data," Mach. Learn., vol. 20, pp. 197-243, 1995.
    • (1995) Mach. Learn. , vol.20 , pp. 197-243
    • Heckerman, D.1    Geiger, D.2    Chickering, D.3
  • 21
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • S. Kirkpatrick, C. D. Gelatt, and M. P. Vecchi, "Optimization by simulated annealing," Science, vol. 220, no. 4598, pp. 671-680, 1983.
    • (1983) Science , vol.220 , Issue.4598 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt, C.D.2    Vecchi, M.P.3
  • 25
  • 26
    • 0002251094 scopus 로고    scopus 로고
    • Bucket elimination: A unifying framework for probabilistic inference
    • R. Dechter, "Bucket elimination: A unifying framework for probabilistic inference," in Proc. Conf. Uncertainty in Artificial Intelligence, 1996, pp. 211-219.
    • (1996) Proc. Conf. Uncertainty in Artificial Intelligence , pp. 211-219
    • Dechter, R.1
  • 27
    • 0027176915 scopus 로고
    • PBX1 is converted into a transcriptional activator upon acquiring the N-terminal region of E2A in pre-b-cell acute lymphoblastic leukemia
    • M. A. van Duck, P. M. Voorhoeve, and C. Murre, "PBX1 is converted into a transcriptional activator upon acquiring the N-terminal region of E2A in pre-b-cell acute lymphoblastic leukemia," Proc. Nat. Acad. Sci., vol. 90, pp. 6061-6065, 1993.
    • (1993) Proc. Nat. Acad. Sci. , vol.90 , pp. 6061-6065
    • Van Duck, M.A.1    Voorhoeve, P.M.2    Murre, C.3
  • 28
    • 0035839891 scopus 로고    scopus 로고
    • The role of E2A-PBX1 in leukemogenesis
    • S. E. Aspland, H. H. Bendall, and C. Murre, "The role of E2A-PBX1 in leukemogenesis," Oncogene, vol. 20, pp. 5708-5717, 2001.
    • (2001) Oncogene , vol.20 , pp. 5708-5717
    • Aspland, S.E.1    Bendall, H.H.2    Murre, C.3
  • 29
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc. Nat. Acad. Sci., vol. 95, no. 25, pp. 14 863-14 868, 1998.
    • (1998) Proc. Nat. Acad. Sci. , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 30
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • T. R. Golub et al., "Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring," Science, vol. 286, pp. 531-537, 1999.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1
  • 31
    • 0000155080 scopus 로고    scopus 로고
    • Inferring subnetworks from perturbed expression profiles
    • D. Pe'er, A. Regev, G. Elidan, and N. Friedman, "Inferring subnetworks from perturbed expression profiles," Bioinformatics, vol. 338, no. 1, pp. 1-9, 2001.
    • (2001) Bioinformatics , vol.338 , Issue.1 , pp. 1-9
    • Pe'er, D.1    Regev, A.2    Elidan, G.3    Friedman, N.4
  • 32
    • 0036372453 scopus 로고    scopus 로고
    • Estimation of genetic networks and functional structures between genes by using Bayesian network and non-parametric regression
    • S. Imoto, T. Goto, and S. Miyano, "Estimation of genetic networks and functional structures between genes by using Bayesian network and non-parametric regression," in Proc. Pacific Symp. Biocompiuing, 2002, pp. 175-186.
    • (2002) Proc. Pacific Symp. Biocompiuing , pp. 175-186
    • Imoto, S.1    Goto, T.2    Miyano, S.3
  • 34
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: Identifying regulatory modules and their condition specific regulators from gene expression data
    • E. Segal, M. Shapira, A. Regev, D. Pe'er, D. Botstein, D. Koller, and N. Friedman, "Module networks: Identifying regulatory modules and their condition specific regulators from gene expression data," Nature Genet., vol. 34, no. 2, pp. 166-176, 2003.
    • (2003) Nature Genet. , vol.34 , Issue.2 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'er, D.4    Botstein, D.5    Koller, D.6    Friedman, N.7
  • 36
    • 3342951856 scopus 로고    scopus 로고
    • Mining functional modules in genetic networks by decomposable models
    • to be published
    • M. Dejori, A. Schwaighofer, V. Tresp, and M. Stetter, "Mining functional modules in genetic networks by decomposable models," OMICS, 2004, to be published.
    • (2004) OMICS
    • Dejori, M.1    Schwaighofer, A.2    Tresp, V.3    Stetter, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.