메뉴 건너뛰기




Volumn 110, Issue 7, 2004, Pages 689-702

A combination of baiting and different PCR formats, including measurement of real-time quantitative fluorescence, for the detection of Phytophthora fragariae in strawberry plants

Author keywords

DIAPOPS; internal PCR control; Molecular Beacon; nested PCR; PCR ELISA; TaqMan

Indexed keywords

DETECTION METHOD; FLUORESCENCE; FUNGAL DISEASE; POLYMERASE CHAIN REACTION;

EID: 4544302449     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EJPP.0000041551.26970.0e     Document Type: Article
Times cited : (36)

References (38)
  • 1
    • 84981072923 scopus 로고
    • Certification scheme for strawberry
    • Anonymous (1994) Certification scheme for strawberry. Bulletin OEPP/EPPO Bulletin 24: 857-889
    • (1994) Bulletin OEPP/EPPO Bulletin , vol.24 , pp. 857-889
  • 2
    • 0032821051 scopus 로고    scopus 로고
    • Real-time quantitative PCR: DNA determination in isolated spores of the mycorrhizal fungus Glomus mossae and monitoring of Phytophthora infestans and Phytophthora citricola in their respective host plants
    • Böhm J, Hahn A, Schubert R, Bahnweg G, Adler N, Nechwatal J, Oehlmann R and Oßwald W (1999) Real-time quantitative PCR: DNA determination in isolated spores of the mycorrhizal fungus Glomus mossae and monitoring of Phytophthora infestans and Phytophthora citricola in their respective host plants. Journal of Phytopathology 147: 409-416
    • (1999) Journal of Phytopathology , vol.147 , pp. 409-416
    • Böhm, J.1    Hahn, A.2    Schubert, R.3    Bahnweg, G.4    Adler, N.5    Nechwatal, J.6    Oehlmann, R.7    Oßwald, W.8
  • 4
    • 0031837586 scopus 로고    scopus 로고
    • Utility of random amplified polymorphic DNA PCR and TaqMan automated detection in molecular identification of Aspergillus fumigatus
    • Brandt ME, Padhye AA, Mayer LW and Holloway BP (1998) Utility of random amplified polymorphic DNA PCR and TaqMan automated detection in molecular identification of Aspergillus fumigatus. Journal of Clinical Microbiology 36: 2057-2062
    • (1998) Journal of Clinical Microbiology , vol.36 , pp. 2057-2062
    • Brandt, M.E.1    Padhye, A.A.2    Mayer, L.W.3    Holloway, B.P.4
  • 5
    • 0033826942 scopus 로고    scopus 로고
    • Rapid detection of Campylobacter fetus by polymerase chain reaction combined with non-radioactive hybridization using an oligonucleotide covalently bound to microwells
    • Casademont I, Bizet C, Chevrier D and Guesdon JL (2000) Rapid detection of Campylobacter fetus by polymerase chain reaction combined with non-radioactive hybridization using an oligonucleotide covalently bound to microwells. Molecular and Cellular Probes 14: 233-240
    • (2000) Molecular and Cellular Probes , vol.14 , pp. 233-240
    • Casademont, I.1    Bizet, C.2    Chevrier, D.3    Guesdon, J.L.4
  • 6
    • 0027202603 scopus 로고
    • PCR product quantification by non-radioactive hybridization procedures using an oligonucleotide covalently bound to microwells
    • Chevrier D, Rasmussen SR and Guesdon JL (1993) PCR product quantification by non-radioactive hybridization procedures using an oligonucleotide covalently bound to microwells. Molecular and Cellular Probes 7: 187-197
    • (1993) Molecular and Cellular Probes , vol.7 , pp. 187-197
    • Chevrier, D.1    Rasmussen, S.R.2    Guesdon, J.L.3
  • 7
    • 0031462219 scopus 로고    scopus 로고
    • Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat
    • Cooke DEL and Duncan JM (1997) Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat. Mycological Research 101: 667-677
    • (1997) Mycological Research , vol.101 , pp. 667-677
    • Cooke, D.E.L.1    Duncan, J.M.2
  • 8
    • 0033153208 scopus 로고    scopus 로고
    • Development of internal controls for probe-based nucleic acid diagnostic assays
    • Courtney BC, Smith MM and Henchal EA (1999) Development of internal controls for probe-based nucleic acid diagnostic assays. Analytical Biochemistry 270: 249-256
    • (1999) Analytical Biochemistry , vol.270 , pp. 249-256
    • Courtney, B.C.1    Smith, M.M.2    Henchal, E.A.3
  • 9
    • 0028997897 scopus 로고
    • Attenuation of PCR inhibition in the presence of plant compounds by addition of BLOTTO
    • De Boer SH, Ward LJ, Li X and Chittaranjan S (1995) Attenuation of PCR inhibition in the presence of plant compounds by addition of BLOTTO. Nucleic Acids Research 23: 2567-2568
    • (1995) Nucleic Acids Research , vol.23 , pp. 2567-2568
    • De Boer, S.H.1    Ward, L.J.2    Li, X.3    Chittaranjan, S.4
  • 10
    • 0012824065 scopus 로고
    • A technique for detecting red stele (Phytophthora fragariae) infection of strawberry stocks before planting
    • Duncan JM (1980) A technique for detecting red stele (Phytophthora fragariae) infection of strawberry stocks before planting. Plant Disease 64: 1023-1025
    • (1980) Plant Disease , vol.64 , pp. 1023-1025
    • Duncan, J.M.1
  • 11
    • 0141446199 scopus 로고
    • Effect of temperature and other factors on in vitro germination of Phytophthora fragariae oospores
    • Duncan JM (1985) Effect of temperature and other factors on in vitro germination of Phytophthora fragariae oospores. Transactions of the British Mycological Society 85: 455-462
    • (1985) Transactions of the British Mycological Society , vol.85 , pp. 455-462
    • Duncan, J.M.1
  • 13
    • 0029140927 scopus 로고
    • Effect of temperature and host genotype on the production of inoculum by Phytophthora fragariae var. fragariae from the roots of infected strawberry plants
    • Duncan JM and Kennedy DM (1994) Effect of temperature and host genotype on the production of inoculum by Phytophthora fragariae var. fragariae from the roots of infected strawberry plants. Plant Pathology 44: 10-21
    • (1994) Plant Pathology , vol.44 , pp. 10-21
    • Duncan, J.M.1    Kennedy, D.M.2
  • 14
    • 0028361726 scopus 로고
    • PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species
    • Ersek T, Schoelz JE and English JT (1994) PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species. Applied and Environmental Microbiology 60: 2616-2621
    • (1994) Applied and Environmental Microbiology , vol.60 , pp. 2616-2621
    • Ersek, T.1    Schoelz, J.E.2    English, J.T.3
  • 16
    • 0031868565 scopus 로고    scopus 로고
    • A PCR-ELISA for the detection of potential fumonisin producing Fusarium species
    • Grimm C and Geisen R (1998) A PCR-ELISA for the detection of potential fumonisin producing Fusarium species. Letters in Applied Microbiology 26: 456-462
    • (1998) Letters in Applied Microbiology , vol.26 , pp. 456-462
    • Grimm, C.1    Geisen, R.2
  • 17
    • 0028896908 scopus 로고
    • Plant DNA isolation: A method to efficiently remove polyphenolics, polysaccharides, and RNA
    • Jobes DV, Hurley DL and Thien LB (1995) Plant DNA isolation: A method to efficiently remove polyphenolics, polysaccharides, and RNA. Taxon 44: 379-386
    • (1995) Taxon , vol.44 , pp. 379-386
    • Jobes, D.V.1    Hurley, D.L.2    Thien, L.B.3
  • 18
    • 0033772617 scopus 로고    scopus 로고
    • Enhanced polymerase chain reaction methods for detecting and quantifying Phytophthora infestans in plants
    • Judelson HS and Tooley PW (2000) Enhanced polymerase chain reaction methods for detecting and quantifying Phytophthora infestans in plants. Phytopathology 90: 1112-1119
    • (2000) Phytopathology , vol.90 , pp. 1112-1119
    • Judelson, H.S.1    Tooley, P.W.2
  • 19
    • 84879199023 scopus 로고    scopus 로고
    • The use of nested primers in the polymerase chain reaction for the detection of Phytophthora fragariae and P. cactorum in strawberry
    • Proceedings of the third International Strawberry Symposium, Veldhoven, Netherlands, 29 April-4 May, 1996. Van der Scheer HAT, Lieten F and Dijkstra J (eds)
    • Lacourt I, Bonants PJM, van Gent-Pelzer MPE, Cooke DEL, Hagenaar-de Weerdt M, Surplus L and Duncan JM (1997) The use of nested primers in the polymerase chain reaction for the detection of Phytophthora fragariae and P. cactorum in strawberry. Proceedings of the third International Strawberry Symposium, Veldhoven, Netherlands, 29 April-4 May, 1996. Van der Scheer HAT, Lieten F and Dijkstra J (eds), Acta Horticul. 439: 829-838
    • (1997) Acta Horticul. , vol.439 , pp. 829-838
    • Lacourt, I.1    Bonants, P.J.M.2    Van Gent-Pelzer, M.P.E.3    Cooke, D.E.L.4    Hagenaar-De Weerdt, M.5    Surplus, L.6    Duncan, J.M.7
  • 20
    • 0032078362 scopus 로고    scopus 로고
    • Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA
    • Leone G, van Schijndel H, van Gemen B, Kramer FR and Schoen CD (1998) Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA. Nucleic Acids Research 26: 2150-2155
    • (1998) Nucleic Acids Research , vol.26 , pp. 2150-2155
    • Leone, G.1    Van Schijndel, H.2    Van Gemen, B.3    Kramer, F.R.4    Schoen, C.D.5
  • 21
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak KJ, Flood SJA, Marmaro J, Giusti W and Deetz K (1995) Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods and Applications 4: 357-362
    • (1995) PCR Methods and Applications , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.A.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 23
    • 38149143446 scopus 로고
    • Genome organization of Phytophthora megasperma f. sp. glycinea
    • Mao Y and Tyler B (1991) Genome organization of Phytophthora megasperma f. sp. glycinea. Experimental Mycology 15: 283-293
    • (1991) Experimental Mycology , vol.15 , pp. 283-293
    • Mao, Y.1    Tyler, B.2
  • 25
    • 84889377151 scopus 로고    scopus 로고
    • Detection of potato potyvirus Y in dormant tubers by a PCR-based method DIAPOPS (detection of immobilised amplified product in a one phase system)
    • Pests and Diseases. DJF-Rapport, Markbrug
    • Nielsen SL, Husted K and Rasmussen HN (1998) Detection of potato potyvirus Y in dormant tubers by a PCR-based method DIAPOPS (detection of immobilised amplified product in a one phase system). Fifteenth Danish Plant Protection Conference. Pests and Diseases. DJF-Rapport, Markbrug. No. 3: 73-80
    • (1998) Fifteenth Danish Plant Protection Conference , vol.3 , pp. 73-80
    • Nielsen, S.L.1    Husted, K.2    Rasmussen, H.N.3
  • 26
    • 2642612807 scopus 로고    scopus 로고
    • Application of the one-tube PCR technique in combination with a fast DNA extraction procedure for detecting Phytophthora infestans in infected potato tubers
    • Niepold F and Schober-Butin B (1997) Application of the one-tube PCR technique in combination with a fast DNA extraction procedure for detecting Phytophthora infestans in infected potato tubers. Microbiological Research 152: 345-351
    • (1997) Microbiological Research , vol.152 , pp. 345-351
    • Niepold, F.1    Schober-Butin, B.2
  • 27
    • 84888973486 scopus 로고    scopus 로고
    • Quantitative estimation of Fusarium graminearum using a novel solid phase PCR-assay
    • Dehne HW, Adam G, Diekmann M, Frahm J, Mauler-Machnik A and van Halteren P (eds), Proceedings of the Fourth International Symposium of the European Foundation for Plant Pathology, Bonn, Germany, 9-12 September 1996. Kluwer Academic Publishers, Dordrecht, the Netherlands
    • Niessen ML, Klusmann J and Vogel RF (1997) Quantitative estimation of Fusarium graminearum using a novel solid phase PCR-assay. In: Dehne HW, Adam G, Diekmann M, Frahm J, Mauler-Machnik A and van Halteren P (eds), Diagnosis and Identification of Plant Pathogens. Proceedings of the Fourth International Symposium of the European Foundation for Plant Pathology, Bonn, Germany, 9-12 September 1996. Kluwer Academic Publishers, Dordrecht, the Netherlands, pp. 207-211
    • (1997) Diagnosis and Identification of Plant Pathogens , pp. 207-211
    • Niessen, M.L.1    Klusmann, J.2    Vogel, R.F.3
  • 28
    • 0028344995 scopus 로고
    • Combined polymerase chain reaction-hybridization microplate assay used to detect Bovine Leukemia Virus and Salmonella
    • Rasmussen SR, Rasmussen HB, Larsen MR, Hoff-Jorgensen R and Cano RJ, 1994, Combined polymerase chain reaction-hybridization microplate assay used to detect Bovine Leukemia Virus and Salmonella. Clinical Chemistry 40: 200-205
    • (1994) Clinical Chemistry , vol.40 , pp. 200-205
    • Rasmussen, S.R.1    Rasmussen, H.B.2    Larsen, M.R.3    Hoff-Jorgensen, R.4    Cano, R.J.5
  • 29
    • 0031934217 scopus 로고    scopus 로고
    • PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora
    • Ristaino JB, Madritch M, Trout CL and Parra G (1998) PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora. Applied and Environmental Microbiology 64: 948-954
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 948-954
    • Ristaino, J.B.1    Madritch, M.2    Trout, C.L.3    Parra, G.4
  • 34
    • 0344542079 scopus 로고    scopus 로고
    • Detection of Mycoplasma hypopneumoniae by air sampling with a nested-PCR assay
    • Stark KD, Nicolet Y and Frey Y (1998) Detection of Mycoplasma hypopneumoniae by air sampling with a nested-PCR assay. Applied and Environmental Microbiology 63: 543-548
    • (1998) Applied and Environmental Microbiology , vol.63 , pp. 543-548
    • Stark, K.D.1    Nicolet, Y.2    Frey, Y.3
  • 35
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi S and Kramer FR (1996) Molecular beacons: Probes that fluoresce upon hybridization. Nature Biotechnology 14: 303-308
    • (1996) Nature Biotechnology , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 36
    • 0036191533 scopus 로고    scopus 로고
    • Optimization of sample size and DNA extraction methods to improve PCR detection of different propagules of Phytophthora infestans
    • Wangsomboondee T and Ristaino JB (2002) Optimization of sample size and DNA extraction methods to improve PCR detection of different propagules of Phytophthora infestans. Plant Disease 86: 247-253
    • (2002) Plant Disease , vol.86 , pp. 247-253
    • Wangsomboondee, T.1    Ristaino, J.B.2
  • 37
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ and White TJ (eds), Academic Press, San Diego
    • White TJ, Bruns T, Lee SB and Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ and White TJ (eds), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, pp. 315-322
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.B.3    Taylor, J.W.4
  • 38
    • 0032839470 scopus 로고    scopus 로고
    • Molecular detection of Diaporthe phaseolorum and Phomopsis longicolla from soybean seeds
    • Zhang AW, Hartman GL, Curio-Penny B, Pedersen WL and Becker KB (1999) Molecular detection of Diaporthe phaseolorum and Phomopsis longicolla from soybean seeds. Phytopathology 89: 796-804
    • (1999) Phytopathology , vol.89 , pp. 796-804
    • Zhang, A.W.1    Hartman, G.L.2    Curio-Penny, B.3    Pedersen, W.L.4    Becker, K.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.