The genomic organization and evolutionary distribution of a tandemly repeated DNA sequence family in the genus Crocus (Iridaceae)

Hereditas

Volumn 141, Issue 1, 2004, Pages 81-88

  Frello, S ^a   Orgaard M ^a   Jacobsen, N ^a   Heslop Harrison, J S ^b  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

ARTICLE; CENTROMERE; CHROMOSOME ANALYSIS; CONTROLLED STUDY; CROCUS; DNA EXTRACTION; DNA LIBRARY; DNA SEQUENCE; GENE STRUCTURE; GENETIC CONSERVATION; GENETIC ORGANIZATION; GENOME ANALYSIS; IN SITU HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENETICS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; SPECIES DIFFERENCE; SPECIES DIVERSITY; TANDEM REPEAT; TELOMERE;

CROCUS; DNA, PLANT; EVOLUTION, MOLECULAR; GENE LIBRARY; GENOME, PLANT; IN SITU HYBRIDIZATION, FLUORESCENCE; SPECIES SPECIFICITY; TANDEM REPEAT SEQUENCES;

CROCUS; CROCUS VERNUS; EMBRYOPHYTA; IRIDACEAE;

EID: 4544292280     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2004.01839.x     Document Type: Article

References (38)

1. Anamthawat-Jonsson, K. and Heslop-Harrison, J. S. 1993. Isolation and characterization of genome-specific DNA sequences in Triticeae species. - Mol. Gen. Genet. 240: 151-158.
2. Barnes, S. R., James, A. M. and Jamieson, G. 1985. The organization, nucleotide sequence and chromosomal distribution of a satellite DNA from Allium cepa. - Chromosoma 92: 185-192.
3. Boeke, J. D., Garfinkel, D. J., Styles, C. A. et al. 1985. Ty elements transpose through an RNA intermediate. - Cell 40: 491-500.
4. Busch, W., Martin, R., Herrmann, R. G. et al. 1995. Repeated DNA sequences isolated by microdissection: I. Karyotyping of barley (Hordeum vulgare L.). - Genome 38: 1082-1090.
5. Charlesworth, B., Sniegowski, P. and Stephan, W. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. - Nature 371: 215-220.
6. Chun-Mong, C., Chi-Ting, W., Chung-ju, W. et al. 1997. Two tandemly repeated telomere-associated sequences in Nicotiana plumbaginifolia. - Chromosome Res. 5: 561-568.
7. de Bustos, A., Cuadrado, A., Soler, C. et al. 1996. Physical mapping of repetitive DNA sequences and 5S and 18S-26S rDNA in five wild species of the genus Hordeum. - Chromosome Res. 4: 491-499.
8. Dubcovsky, J. and Dvorak, J. 1994. Genome origins of Triticum cylindricum, Triticum triunciale, and Triticum ventricosum (Poaceae) inferred from variation in restriction patterns of repeated nucleotide sequences: a methodological study. Am. J. Bot. 81: 1327-1335.
9. Fahleson, J., Lagercrantz, U., Mouras, A. et al. 1997. Characterization of somatic hybrids between Brassica napus and Eruca sativa using species-specific repetitive sequences and genomic in situ hybridization. - Plant Sci. (Shannon) 123: 133-142.
10. Flavell, R. B. 1986. Repetitive DNA and chromosome evolution in plants. - Philos. Trans. R. Soc. Lond. B 312:227-242.
11. Flavell, A. J., Pearce, S. R. and Kumar, A. 1994. Plant transposable elements and the genome. - Curr. Opin. Genet. Dev. 4: 838-844.
12. Frello, S. and Heslop-Harrison, J. S. 2000a. Chromosomal variation in Crocus vernus Hill (Iridaceae) investigated by in situ hybridization of rDNA anda tandemly repeated sequence. - Ann. Bot. 86: 317-322.
13. Frello, S. and Heslop-Harrison, J. S. 2000b. Repetitive DNA sequences in Crocus vernus Hill (lridaceae): the genomic organization and distribution of dispersed elements in the genus Crocus and its allies. - Genome 43: 902-909.
14. Fuchs, J., Brandes, A. and Schubert, I. 1995. Telomere sequence localization and karyotype evolution in higher plants. - Pl. Syst. Evol. 196: 227-241.
15. Galasso, I., Schmidt, T, Pignone, D. et al. 1995. The molecular cytogenetics of Vigna unguiculata (L.) Walp: the physical organization and characterization of 18s-5.8s-25s rRNA genes, 5s rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences. - Theor. Appl. Genet. 91: 928-935.
16. Ganal, E. S., Lapitan., N. L. V. and Thanksley, S. D. 1991. Macrostructure of the tomato teloemeres. Plant Cell 3: 87-94.
17. Harrison, G. E. and Heslop-Harrison, J. S. 1995. Centromeric repetitive DNA in the genus Brassica. - Theor. Appl. Genet. 90: 157-165.
18. Heslop-Harrison, J. S. 1995. 50th SEB Symposium, Unifying Plant Genomes. Programme and Abstracts. - Soc. Exp. Biol., London.
19. Kubis, S., Schmidt, T. and Heslop-Harrison, J. S. 1997. A family of differentially amplified repetitive sequences in the genus Beta reveals genetic variation in Beta vulgaris subspecies and cultivars. - J. Mol. Evol. 44: 310-320.
20. Kubis, S., Schmidt, T. and Heslop-Harrison, J. S. 1998. Repetitive DNA elements as a major component of plant genomes. - Ann. Bot. 82(A): 45-55.
21. Kumar, A., Pearce, S. R., McLean, K. et al. 1997. The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution and use as molecular markers. - Genetica 100: 205-217.
22. Mathew, B. 1982. The Crocus, a revision of the genus Crocus (Iridaceae). - B.T. Batsford Ltd., London.
23. Moore, G., Devos, K. M., Wang, Z. et al. 1995. Grasses, line up and form a circle. Curr. Biol. 5: 737-739.
24. Nagaki, K., Tsujimoto, H. and Sasakuma, T. 1998. A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions. - Chromosome Res. 6: 295-302.
25. Norbaek, R., Brandt, K., Nielsen, J. K. et al. 2002. Flower pigment composition of Crocus species and cultivars used for a chemotaxonomic investigation. - Biochem. Syst. Ecol. 30: 763-791.
26. Olszewska, M. and Osiecka, R. 1982. Relationship between 2C DNA content, life cycle type, systematic position and the level of endoreplication in nuclei of parenchyma cells during growth and differentiation of roots in some monocotelydon species. - Biochem. Physiol. Plantz. 177: 319-336.
27. Ørgaard, M. and Heslop-Harrison, J. S. 1994. Relationships between species of Leymus, Psathyrostachys and Hordeum (Poaceae, Triticeae) inferred from Southern hybridization of genomic DNA and cloned DNA probes. - Pl. Syst. Evol. 189: 217-231.
28. Ørgaard, M., Jacobsen, N. and Heslop-Harrison, J. S. 1995. The hybrid origin of two cultivars of Crocus (Iridaceae) analysed by molecular cytogenetics including genomic Southern and in situ hybridization. - Ann. Bot. 76: 253-262.
29. Preiszner, J., Takacs, I., Bilgin, M. et al. 1994. Organization of a Solanum brevidens repetitive sequence related to the TGRI subtelomeric repeats of Lycopersicon esculentum. - Theor. Appl. Genet. 89: 1-8.
30. Sambrook, J., Fritsch, E. F. and Maniatis, T. 1989. Molecular cloning: a laboratory manual, 2nd edn. - Cold Spring Harbor Laboratory Press.
31. Schmidt, T. and Heslop-Harrison, J. S. 1993. Variability and evolution of highly repeated DNA sequences in the genus Beta. - Genome 36: 1074-1079.
32. Schmidt, T. and Heslop-Harrison, J. S. 1998. Genomes, genes and junk: the large scale organization of plant chromosomes. - Trends Plant Sci. 3: 195-199.
33. Schwarzacher, T and Heslop-Harrison, J. S. 1991. In situ hybridization to plant telomeres using synthetic oligomers. - Genome 34: 317-323.
34. Schwarzacher, T. and Heslop-Harrison, J. S. 2000. Practical in situ hybridization. - Oxford: BIOS.
35. Souza-Chies, T. T., Bittar, G., Nadot, S. et al. 1997. Phylogenetic analysis of Iridaceae with parsimony and distance methods using the plasmid gene rps4. - Pl. Syst. Evol. 204: 109-123.
36. Svitashev, S., Bryngelsson, T., Vershinin, A. et al. 1994. Phylogenetic analysis of the genus Hordeum using repetitive DNA sequences. - Theor. Appl. Genet. 89: 801-810.
37. Vershinin, A. V. and Heslop-Harrison, J. S. 1998. Comparative analysis of the nucleosomal structure of rye, wheat and their relatives. - Plant Mol. Biol. 39: 149-161.
38. Vershinin, A., Schwarzacher, T. and Heslop-Harrison, J. S. 1995. The large scale genomic organization of repetitive DNA families at the telomeres of rye chromosomes. - Plant Cell 7: 1823-1833.