-
1
-
-
0033754285
-
PCR bias in ecological analysis: A case study for quantitative Taq nuclease assays in analyses of microbial communities
-
Becker, S., Boger, P., Oehlmann, R., Ernst, A.: PCR bias in ecological analysis: a case study for quantitative Taq nuclease assays in analyses of microbial communities. Appl. Environ. Microbiol. 66, 4945-4953 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4945-4953
-
-
Becker, S.1
Boger, P.2
Oehlmann, R.3
Ernst, A.4
-
2
-
-
0034521197
-
Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences
-
Chun, J. and Bae, K. S.: Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences. Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 78, 123-127 (2000).
-
(2000)
Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol.
, vol.78
, pp. 123-127
-
-
Chun, J.1
Bae, K.S.2
-
3
-
-
0035511958
-
Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages
-
Cocolin, L., Manzano, M., Cantoni, C., Comi, G.: Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages. Appl. Environ. Microbiol. 67, 5113-5121 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5113-5121
-
-
Cocolin, L.1
Manzano, M.2
Cantoni, C.3
Comi, G.4
-
4
-
-
0036624813
-
Molecular community analysis of microbial diversity
-
Dahllof, I.: Molecular community analysis of microbial diversity. Curr. Opin. Biotechnol. 13, 213-217 (2002).
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 213-217
-
-
Dahllof, I.1
-
5
-
-
0033860832
-
rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
-
Dahllof, I., Baillie, H., Kjelleberg, S.: rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66, 3376-3380 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3376-3380
-
-
Dahllof, I.1
Baillie, H.2
Kjelleberg, S.3
-
6
-
-
0036962255
-
Study of the bacterial load in a gelatine production process, focussed on Bacillus and related endosporeforming genera
-
de Clerck, E. and de Vos, P.: Study of the bacterial load in a gelatine production process, focussed on Bacillus and related endosporeforming genera. Syst. Appl. Microbiol. 25, 611-618 (2002).
-
(2002)
Syst. Appl. Microbiol.
, vol.25
, pp. 611-618
-
-
De Clerck, E.1
De Vos, P.2
-
7
-
-
2542633819
-
Isolation, characterisation and identification of bacterial contaminants in semi-final gelatine extracts
-
in press
-
de Clerck, E., Vanhoutte, T., Hebb, T., Geerinck, J., Devos, J. and de Vos, P.: Isolation, characterisation and identification of bacterial contaminants in semi-final gelatine extracts. Appl. Environ. Microbiol. in press (2004).
-
(2004)
Appl. Environ. Microbiol.
-
-
De Clerck, E.1
Vanhoutte, T.2
Hebb, T.3
Geerinck, J.4
Devos, J.5
De Vos, P.6
-
8
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rRNA defined populations inhabiting a hot spring microbial mat community
-
Ferris, M. J., Muyzer, G., Ward, D. M.: Denaturing gradient gel electrophoresis profiles of 16S rRNA defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62, 340-346 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
9
-
-
0030220506
-
Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
-
Heyndrickx, M., Vauterin, L., Vandamme, P., Kersters, K., de Vos, P.: Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Meth. 26, 247-259 (1996).
-
(1996)
J. Microbiol. Meth.
, vol.26
, pp. 247-259
-
-
Heyndrickx, M.1
Vauterin, L.2
Vandamme, P.3
Kersters, K.4
De Vos, P.5
-
10
-
-
0035680885
-
16S rDNA sequence analysis of bacterial isolates from biodeteriorated murals paintings in the Servilia tomb (necropolis of Carmona, Seville, Spain)
-
Heyrman, J. and Swings, J.: 16S rDNA sequence analysis of bacterial isolates from biodeteriorated murals paintings in the Servilia tomb (necropolis of Carmona, Seville, Spain). Syst. App. Microbiol. 24, 417-422 (2001).
-
(2001)
Syst. App. Microbiol.
, vol.24
, pp. 417-422
-
-
Heyrman, J.1
Swings, J.2
-
11
-
-
0038054120
-
Limited resolution of 16S rDNA DGGE caused by melting properties and closely related sequences
-
Kisand, V. and Wikner, J.: Limited resolution of 16S rDNA DGGE caused by melting properties and closely related sequences. J. Microbiol. Meth. 54, 183-191 (2003).
-
(2003)
J. Microbiol. Meth.
, vol.54
, pp. 183-191
-
-
Kisand, V.1
Wikner, J.2
-
12
-
-
0025990859
-
Identification of mesophilic lactic acid bacteria by using polymerase chain reaction-amplified variable regions of 16S rRNA and specific DNA probes
-
Klijn, N., Weerkamp, A. H., de Vos, W. M.: Identification of mesophilic lactic acid bacteria by using polymerase chain reaction-amplified variable regions of 16S rRNA and specific DNA probes. Appl. Environ. Microbiol. 57, 3390-3393 (1991).
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 3390-3393
-
-
Klijn, N.1
Weerkamp, A.H.2
De Vos, W.M.3
-
13
-
-
0034095995
-
Epidemiology and pathogenesis of Bacillus cereus infections
-
Kotiranta, A., Lounatmaa, K., Haapasalo, M.: Epidemiology and pathogenesis of Bacillus cereus infections. Microbes and Infection 2, 189-198 (2000).
-
(2000)
Microbes and Infection
, vol.2
, pp. 189-198
-
-
Kotiranta, A.1
Lounatmaa, K.2
Haapasalo, M.3
-
14
-
-
0033799179
-
Aerobic endospore forming bacteria from geothermal environments in Northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich Archipelago, with the proposal of Bacillus fumarioli sp. nov.
-
Logan, N. A., Lebbe, L., Hoste, B., Goris, J., Forsyth, G., Heyndrickx, M., Murray, B. L., Syme, N., Wynn-Williams, D. D., de Vos, P.: Aerobic endospore forming bacteria from geothermal environments in Northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich Archipelago, with the proposal of Bacillus fumarioli sp. nov. Int. J. Syst. Evol. Microbiol. 50, 1741-1753 (2000).
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 1741-1753
-
-
Logan, N.A.1
Lebbe, L.2
Hoste, B.3
Goris, J.4
Forsyth, G.5
Heyndrickx, M.6
Murray, B.L.7
Syme, N.8
Wynn-Williams, D.D.9
De Vos, P.10
-
15
-
-
0842269892
-
Bacillus shackletonii sp. nov., from volcanic soil on Candlemas Island, South Sandwich archipelago
-
Papers in Press
-
Logan, N. A., Lebbe, L., Verhelst, A., Goris, J., Forsyth, G., Rodriguez-Diaz, M., Heyndrickx, M., de Vos, P.: Bacillus shackletonii sp. nov., from volcanic soil on Candlemas Island, South Sandwich archipelago. Int. J. Syst. Evol. Microbiol. Papers in Press (2004).
-
(2004)
Int. J. Syst. Evol. Microbiol.
-
-
Logan, N.A.1
Lebbe, L.2
Verhelst, A.3
Goris, J.4
Forsyth, G.5
Rodriguez-Diaz, M.6
Heyndrickx, M.7
De Vos, P.8
-
16
-
-
4344644733
-
Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov., from Antarctic volcanic soils and a gelatin processing plant
-
Papers in Press
-
Logan, N. A., de Clerck, E., Lebbe, L., Verhelst, A., Goris, J., Forsyth, G., Rodriguez-Diaz, M., Heyndrickx, M., de Vos, P.: Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov., from Antarctic volcanic soils and a gelatin processing plant. Int. J. Syst. Evol. Microbiol. Papers in Press (2004).
-
(2004)
Int. J. Syst. Evol. Microbiol.
-
-
Logan, N.A.1
De Clerck, E.2
Lebbe, L.3
Verhelst, A.4
Goris, J.5
Forsyth, G.6
Rodriguez-Diaz, M.7
Heyndrickx, M.8
De Vos, P.9
-
17
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent, F., Philippot, L., Hallet, S., Chaussod, R., Germon, J. C., Soulas, G., Catroux, G.: DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67, 2354-2359 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
Soulas, G.6
Catroux, G.7
-
18
-
-
0033152336
-
DGGE/TGGE, a method for identifying genes from natural ecosystems
-
Muyzer, G.: DGGE/TGGE, a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol. 2, 317-322 (1999).
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 317-322
-
-
Muyzer, G.1
-
19
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., de Waal, E. C., Uitterlinden, A. G.: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700 (1993).
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
20
-
-
0001868071
-
Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities
-
Kluwer Academic Publishers
-
Muyzer, G., Hottentrager, S., Teske, A., Wawer, C.: Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities, Molecular Micobial Ecology Manual the Netherlands, Kluwer Academic Publishers 1996.
-
(1996)
Molecular Micobial Ecology Manual the Netherlands
-
-
Muyzer, G.1
Hottentrager, S.2
Teske, A.3
Wawer, C.4
-
21
-
-
0024553747
-
Rapid extraction of bacterial genomic DNA with guanidium thiocyanate
-
Pitcher, D. G., Saunders, N. A., Owen R. J.: Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8, 151-156 (1989).
-
(1989)
Lett. Appl. Microbiol.
, vol.8
, pp. 151-156
-
-
Pitcher, D.G.1
Saunders, N.A.2
Owen, R.J.3
-
22
-
-
0032829069
-
Toxigenic strains of Bacillus licheniformis related to food poisoning
-
Salkinoja-Salonen, M. S., Vuorio, R., Andersson, M. A., Kämpfer, P., Andersson, M. C., Honkanen-Buzalski, T., Scoging, A. C.: Toxigenic strains of Bacillus licheniformis related to food poisoning. Appl. Environ. Microbiol. 65, 4637-4645 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4637-4645
-
-
Salkinoja-Salonen, M.S.1
Vuorio, R.2
Andersson, M.A.3
Kämpfer, P.4
Andersson, M.C.5
Honkanen-Buzalski, T.6
Scoging, A.C.7
-
23
-
-
4544333899
-
-
(R. Berkeley, M. Heyndrickx, N. A. Logan, P. de Vos, eds.) Blackwell Publishing
-
Stackebrandt, E., Swiderski, J.: From phylogeny to systematics: the dissection of the genus Bacillus, Applications and Systematics of Bacillus and relatives (R. Berkeley, M. Heyndrickx, N. A. Logan, P. de Vos, eds.) Blackwell Publishing 2002.
-
(2002)
From Phylogeny to Systematics: The Dissection of the Genus Bacillus, Applications and Systematics of Bacillus and Relatives
-
-
Stackebrandt, E.1
Swiderski, J.2
-
24
-
-
0037229186
-
Culture-independent analysis of probiotic products by denaturing gradient gel electrophoresis
-
Temmerman, R., Scheirlinck, I., Huys, G., Swings, J.: Culture-independent analysis of probiotic products by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69, 220-226 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 220-226
-
-
Temmerman, R.1
Scheirlinck, I.2
Huys, G.3
Swings, J.4
-
25
-
-
0035544053
-
Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes
-
Van Der Gucht, K., Sabbe, K., De Meester, L., Vloemans, N., Zwart, G., Gillis, M., Vyverman, W.: Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ Microbiol 3, 680-90 (2001).
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 680-690
-
-
Van Der Gucht, K.1
Sabbe, K.2
De Meester, L.3
Vloemans, N.4
Zwart, G.5
Gillis, M.6
Vyverman, W.7
-
26
-
-
0033989325
-
Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers
-
Walter, J., Tannock, G. W., Tilsala-Timisjarvi, A., Rodtong, S., Loach, D. M., Munro, K., Alatossava, T.: Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl. Environ. Microbiol. 66, 297-303 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 297-303
-
-
Walter, J.1
Tannock, G.W.2
Tilsala-Timisjarvi, A.3
Rodtong, S.4
Loach, D.M.5
Munro, K.6
Alatossava, T.7
-
27
-
-
0000770675
-
Report of the ad-hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., Trüper, H. G.: Report of the ad-hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464 (1987).
-
(1987)
Int. J. Syst. Bacteriol.
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
Stackebrandt, E.10
Starr, M.P.11
Trüper, H.G.12
-
28
-
-
0032963157
-
Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringienesis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice
-
Yamada, S., Ohashi, E., Agata, N., Venkateswaran, K.: Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringienesis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice. Appl. Environ. Microbiol. 65, 1483-1490 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1483-1490
-
-
Yamada, S.1
Ohashi, E.2
Agata, N.3
Venkateswaran, K.4
-
29
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
-
Zoetendal, E. G., Akkermans, A. D., de Vos, W. M.: Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64, 3854-3859 (1998).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
De Vos, W.M.3
-
30
-
-
0035687710
-
DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract
-
Zoetendal, E. G., Ben-Amor, K., Akkermans, A. D. L., Abee, T., de Vos, W. M.: DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract. Syst. Appl. Microbiol. 24, 405-410 (2001).
-
(2001)
Syst. Appl. Microbiol.
, vol.24
, pp. 405-410
-
-
Zoetendal, E.G.1
Ben-Amor, K.2
Akkermans, A.D.L.3
Abee, T.4
De Vos, W.M.5
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