메뉴 건너뛰기




Volumn 137, Issue 3, 2008, Pages 751-762

Number of alleles as a predictor of the relative assignment accuracy of short tandem repeat (STR) and single-nucleotide-polymorphism (SNP) baselines for chum salmon

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; COMPARATIVE STUDY; GENETIC MARKER; MODELING; POLYMORPHISM; PREDICTION; SALMONID;

EID: 45249120404     PISSN: 00028487     EISSN: 15488659     Source Type: Journal    
DOI: 10.1577/T07-104.1     Document Type: Article
Times cited : (48)

References (38)
  • 4
    • 0036846287 scopus 로고    scopus 로고
    • The use of AFLP to find an informative SNP: Genetic differences across a migratory divide in willow warblers
    • Bensch, S., S. Akesson, and D. E. Irwin. 2002. The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers. Molecular Ecology 11:2359-2366.
    • (2002) Molecular Ecology , vol.11 , pp. 2359-2366
    • Bensch, S.1    Akesson, S.2    Irwin, D.E.3
  • 6
    • 0034878996 scopus 로고    scopus 로고
    • Isolation and characterization of chum salmon microsatellite loci and use across species
    • Buchholz, W., S. J. Miller, and W. J. Spearman. 2001. Isolation and characterization of chum salmon microsatellite loci and use across species. Animal Genetics 32:160-167.
    • (2001) Animal Genetics , vol.32 , pp. 160-167
    • Buchholz, W.1    Miller, S.J.2    Spearman, W.J.3
  • 8
    • 0034491791 scopus 로고    scopus 로고
    • Debevec, E. M, R. B. Gates, M. Masuda, J. Pella, J. Reynolds, and L. W. Seeb. 2000. SPAM version 3.2, statistics program for analyzing mixtures. Journal of Heredity 91:509-510
    • Debevec, E. M., R. B. Gates, M. Masuda, J. Pella, J. Reynolds, and L. W. Seeb. 2000. SPAM (version 3.2): statistics program for analyzing mixtures. Journal of Heredity 91:509-510.
  • 9
    • 35848959243 scopus 로고    scopus 로고
    • Thirty-eight single-nucleotide polymorphism markers for high-throughput genotyping of chum salmon
    • Elfstrom, C. M., C. T. Smith, and L. W. Seeb. 2007. Thirty-eight single-nucleotide polymorphism markers for high-throughput genotyping of chum salmon. Molecular Ecology Notes 7:1211-1215.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 1211-1215
    • Elfstrom, C.M.1    Smith, C.T.2    Seeb, L.W.3
  • 10
    • 4444327033 scopus 로고    scopus 로고
    • Gametic phase estimation over large genomic regions using an adaptive window approach
    • Excoffier, L., G. Laval, and D. Balding. 2003. Gametic phase estimation over large genomic regions using an adaptive window approach. Human Genomics 1:7-19.
    • (2003) Human Genomics , vol.1 , pp. 7-19
    • Excoffier, L.1    Laval, G.2    Balding, D.3
  • 11
    • 45249123617 scopus 로고    scopus 로고
    • Excoffier, L, G. Laval, and S. Schneider. 2005. ARLEQUIN, version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50
    • Excoffier, L., G. Laval, and S. Schneider. 2005. ARLEQUIN, version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50.
  • 12
    • 2542425766 scopus 로고    scopus 로고
    • CONVERT: A user friendly program to reformat diploid genotypic data for commonly used population genetic software packages
    • Glaubitz, J. C. 2004. CONVERT: a user friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Molecular Ecology Notes 4:309-310.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 309-310
    • Glaubitz, J.C.1
  • 13
    • 0026689178 scopus 로고
    • Performing the exact test of Hardy-Weinberg proportion for multiple alleles
    • Guo, S. W., and E. A. Thompson. 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-72.
    • (1992) Biometrics , vol.48 , pp. 361-372
    • Guo, S.W.1    Thompson, E.A.2
  • 16
    • 33645470540 scopus 로고    scopus 로고
    • Proportioning whole-genome single-nucleotide-polymorphism diversity for the identification of geographic population structure and genetic ancestry
    • Lao, O., K. van Duijn, P. Kersbergen, P. de Knijff, and M. Kayser. 2006. Proportioning whole-genome single-nucleotide-polymorphism diversity for the identification of geographic population structure and genetic ancestry. American Journal of Human Genetics 78:680-690.
    • (2006) American Journal of Human Genetics , vol.78 , pp. 680-690
    • Lao, O.1    van Duijn, K.2    Kersbergen, P.3    de Knijff, P.4    Kayser, M.5
  • 17
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27:209-220.
    • (1967) Cancer Research , vol.27 , pp. 209-220
    • Mantel, N.1
  • 18
    • 0034520080 scopus 로고    scopus 로고
    • Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon
    • Olsen, J. B., S. L. Wilson, E. J. Kretschmer, K. C. Jones, and J. E. Seeb. 2000. Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon. Molecular Ecology 9:2185-2187.
    • (2000) Molecular Ecology , vol.9 , pp. 2185-2187
    • Olsen, J.B.1    Wilson, S.L.2    Kretschmer, E.J.3    Jones, K.C.4    Seeb, J.E.5
  • 20
    • 0002890017 scopus 로고
    • Use of genetic markers in stock composition analysis
    • N. Ryman and F. Utter, editors, Washington Sea Grant Program, University of Washington Press, Seattle
    • Pella, J. J., and G. B. Milner. 1987. Use of genetic markers in stock composition analysis. Pages 247-276 in N. Ryman and F. Utter, editors. Population genetics and fishery management. Washington Sea Grant Program, University of Washington Press, Seattle.
    • (1987) Population genetics and fishery management , pp. 247-276
    • Pella, J.J.1    Milner, G.B.2
  • 23
    • 45249124446 scopus 로고    scopus 로고
    • Raymond, M, and F. Rousset. 1997. GENEPOP (version 3.1b, an updated version of GENEPOP version 1.2, population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249
    • Raymond, M., and F. Rousset. 1997. GENEPOP (version 3.1b): an updated version of GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
  • 25
    • 33644852119 scopus 로고    scopus 로고
    • CHIFISH: A computer program testing for genetic heterogeneity at multiple loci using chi-square and Fisher's exact test
    • Ryman, N. 2006. CHIFISH: a computer program testing for genetic heterogeneity at multiple loci using chi-square and Fisher's exact test. Molecular Ecology Notes 6:285-287.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 285-287
    • Ryman, N.1
  • 26
    • 0002107940 scopus 로고    scopus 로고
    • High genetic heterogeneity in chum salmon in western Alaska, the contact zone between northern and southern lineages
    • Seeb, L. W., and P. A. Crane. 1999. High genetic heterogeneity in chum salmon in western Alaska, the contact zone between northern and southern lineages. Transactions of the American Fisheries Society 128:58-87.
    • (1999) Transactions of the American Fisheries Society , vol.128 , pp. 58-87
    • Seeb, L.W.1    Crane, P.A.2
  • 29
    • 0031933422 scopus 로고    scopus 로고
    • Discriminating coho salmon (Oncorhynchus kisutch) populations within the Fraser River, British Columbia, using microsatellite DNA markers
    • Small, M. P., T. D. Beacham, R. E. Withler, and R. J. Nelson. 1998. Discriminating coho salmon (Oncorhynchus kisutch) populations within the Fraser River, British Columbia, using microsatellite DNA markers. Molecular Ecology 7:141-155.
    • (1998) Molecular Ecology , vol.7 , pp. 141-155
    • Small, M.P.1    Beacham, T.D.2    Withler, R.E.3    Nelson, R.J.4
  • 31
    • 33646177325 scopus 로고    scopus 로고
    • Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon
    • Smith, C. T., C. M. Elfstrom, J. E. Seeb, and L. W. Seeb. 2005b. Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon. Molecular Ecology 14:4193-4203.
    • (2005) Molecular Ecology , vol.14 , pp. 4193-4203
    • Smith, C.T.1    Elfstrom, C.M.2    Seeb, J.E.3    Seeb, L.W.4
  • 32
    • 0032211381 scopus 로고    scopus 로고
    • Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids
    • Smith, C. T., B. F. Koop, and R. J. Nelson. 1998. Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids. Molecular Ecology 7:1614-1616.
    • (1998) Molecular Ecology , vol.7 , pp. 1614-1616
    • Smith, C.T.1    Koop, B.F.2    Nelson, R.J.3
  • 33
    • 23844472888 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms (SNPs) provide rapid and accurate estimates of the proportions of U.S. and Canadian Chinook salmon caught in Yukon River fisheries
    • Smith, C. T., W. D. Templin, J. E. Seeb, and L. W. Seeb. 2005c. Single-nucleotide polymorphisms (SNPs) provide rapid and accurate estimates of the proportions of U.S. and Canadian Chinook salmon caught in Yukon River fisheries. North American Journal of Fisheries Management 25:944-953.
    • (2005) North American Journal of Fisheries Management , vol.25 , pp. 944-953
    • Smith, C.T.1    Templin, W.D.2    Seeb, J.E.3    Seeb, L.W.4
  • 35
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 38
    • 17644416423 scopus 로고    scopus 로고
    • Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE
    • Yang, B.-Z., H. Zhao, H. R. Kranzler, and J. Gelernter. 2005. Practical population group assignment with selected informative markers: characteristics and properties of Bayesian clustering via STRUCTURE. Genetic Epidemiology 28:302-312.
    • (2005) Genetic Epidemiology , vol.28 , pp. 302-312
    • Yang, B.-Z.1    Zhao, H.2    Kranzler, H.R.3    Gelernter, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.