eResearch solutions for high throughput structural biology

Proceedings - e-Science 2007, 3rd IEEE International Conference on e-Science and Grid Computing

Volumn , Issue , 2007, Pages 221-227

  Faux, Noel ^a   Beitz, Anthony ^a   Bate, Mark ^a   Amin, Abdullah A ^a   Atkinson, Ian ^b   Enticott, Colin ^a   Mahmood, Khalid ^a   Swift, Matthew ^a   Treloar, Andrew ^a   Abramson, David ^a   Whisstock, James C ^a   Buckle, Ashley M ^a  

^a MONASH UNIVERSITY   (Australia)

^b JAMES COOK UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; CLONING; COMPUTATIONAL METHODS; CRYSTALLOGRAPHY; ELECTRON BEAM LITHOGRAPHY; GENETIC ENGINEERING; MANAGEMENT INFORMATION SYSTEMS; MINERALOGY; NUCLEIC ACIDS; ORGANIC ACIDS; PIGMENTS; PIPELINES; TARGET TRACKING; THROUGHPUT; USER INTERFACES; X RAY CRYSTALLOGRAPHY; X RAY OPTICS;

(E ,3E) PROCESS; DATA MANAGEMENT (DM); DNA CLONING; E SCIENCES; HIGH-PERFORMANCE COMPUTING (HPC) RESOURCES; HIGH-THROUGHPUT (HT); INFORMATICS; INFORMATICS INFRASTRUCTURE; INTERNATIONAL CONFERENCES; PROTEIN CRYSTALLOGRAPHY; PROTEIN PRODUCTIONS; PROTEIN STRUCTURES; REMOTE EXPERIMENTING; STRUCTURAL BIOLOGY; STRUCTURE ELUCIDATION; USER-FRIENDLY INTERFACES; X-RAY DATA COLLECTION;

GRID COMPUTING;

EID: 44949233057     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/E-SCIENCE.2007.31     Document Type: Conference Paper

References (12)

1. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (1997) 3389-402.
2. D.d.B. I.M. Atkinson, C. Chee, K. Chiu, T. King, D.F. McMullen, R. Quilici, N.G.D. Sim, P. Turner, M. Wyatt, CIMA Based Remote Instrument and Data Access: An Extension into the Australian e-Science Environment., Proc. IEEE 2nd Int. Conf. on e-Science and Grid Computing Amsterdam, The Netherlands., 2006.
3. CCP4, The CCP4 suite: programs for protein crystallography. Acta Crystallogr D50 (1994) 760-763.
4. H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, and P.E. Bourne, The Protein Data Bank. Nucleic Acids Res 28 (2000) 235-42.
5. L. Jaroszewski, L. Rychlewski, Z. Li, W. Li, and A. Godzik, FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res 33 (2005) W284-8.
6. J.C. Whisstock, and A.M. Lesk, Prediction of protein function from protein sequence and structure. Q Rev Biophys 36 (2003) 307-40.
7. M. Gerstein, A. Edwards, C.H. Arrowsmith, and G.T. Montelione, Structural genomics: current progress. Science 299 (2003) 1663.
8. A. Yee, K. Pardee, D. Christendat, A. Savchenko, A.M. Edwards, and C.H. Arrowsmith, Structural proteomics: toward high-throughput structural biology as a tool in functional genomics. Acc Chem Res 36 (2003) 183-9.
9. R.I. Sadreyev, and N.V. Grishin, Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds. BMC Struct Biol 6 (2006) 6.
10. A. Andreeva, D. Howorth, S.E. Brenner, T.J. Hubbard, C. Chothia, and A.G. Murzin, SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res 32 Database issue (2004) D226-9.
11. A.J. McCoy, R.W. Grosse-Kunstleve, L.C. Storoni, and R.J. Read, Likelihood-enhanced fast translation functions. Acta Crystallogr D Biol Crystallogr 61 (2005) 458-64.
12. D. Abramson, Giddy, J. and Kotler, L., High Performance Parametric Modeling with Nimrod/G: Killer Application for the Global Grid?, International Parallel and Distributed Processing Symposium (IPDPS), Cancun, Mexico, 2000.