메뉴 건너뛰기




Volumn 72, Issue 9, 2008, Pages 2071-2094

A description of the origins, design and performance of the TRAITS-SGP Atlantic salmon Salmo salar L. cDNA microarray

Author keywords

Atlantic salmon; DNA microarray; Gene expression; Immune response; Lipid metabolism; Smoltification

Indexed keywords

SALMO SALAR;

EID: 44949154341     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2008.01876.x     Document Type: Article
Times cited : (53)

References (35)
  • 1
    • 34447299402 scopus 로고    scopus 로고
    • Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource
    • doi: 10.1186/1471-2164-8-209
    • Adzhubei, A. A., Vlasova, A. V., Hagen-Larsen, H., Ruden, T. A., Laerdahl, J. K. Høyheim, B 2007). Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. BMC Genomics 8, 209. doi: 10.1186/1471-2164-8-209
    • (2007) BMC Genomics , vol.209
    • Adzhubei, A.A.1    Vlasova, A.V.2    Hagen-Larsen, H.3    Ruden, T.A.4    Laerdahl, J.K.5    Høyheim, B.6
  • 2
    • 0002590589 scopus 로고
    • Tetraploidy and the evolution of salmonid fishes
    • In. Turner, B. J., ed. pp. New York: Plenum Press.
    • Allendorf, F. W. Thorgaard, G. W 1984). Tetraploidy and the evolution of salmonid fishes. In Evolutionary Genetics of Fishes (Turner, B. J., ed pp. 1 46. New York: Plenum Press.
    • (1984) Evolutionary Genetics of Fishes , pp. 1-46
    • Allendorf, F.W.1    Thorgaard, G.W.2
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. Hochberg, Y 1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B57, 289 300.
    • (1995) Journal of the Royal Statistical Society , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 0345051044 scopus 로고    scopus 로고
    • Normalisation and subtraction: Two approaches to facilitate gene discovery
    • Bonaldo, M. D. F., Lennon, G. Soares, M. B 1996). Normalisation and subtraction: two approaches to facilitate gene discovery. Genome Research 6, 791 806.
    • (1996) Genome Research , vol.6 , pp. 791-806
    • Bonaldo, M.D.F.1    Lennon, G.2    Soares, M.B.3
  • 7
    • 39149095925 scopus 로고    scopus 로고
    • A cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressor
    • doi: 10.1016/j.cbd.2007.04.009
    • Cairns, M. T., Johnson, M. C., Talbot, A. T., Pemmasani, J. K., McNeill, R. E., Houeix, B., Sangrador-Vegas, A. Pottinger, T. G 2008). A cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressor. Comparative Biochemistry and Physiology D 3, 51 66. doi: 10.1016/j.cbd.2007.04.009
    • (2008) Comparative Biochemistry and Physiology D , vol.3 , pp. 51-66
    • Cairns, M.T.1    Johnson, M.C.2    Talbot, A.T.3    Pemmasani, J.K.4    McNeill, R.E.5    Houeix, B.6    Sangrador-Vegas, A.7    Pottinger, T.G.8
  • 8
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A., Gotz, S., Garcia-Gomez, J. M., Terol, J., Talon, M. Robles, M 2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674 3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 9
    • 10944267202 scopus 로고    scopus 로고
    • Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microarray technology
    • Ewart, K. V., Belanger, J. C., Williams, J., Karakach, T., Penny, S., Tsoi, S. C. M., Richards, R. C. Douglas, S. E 2005). Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microarray technology. Developmental and Comparative Immunology 29, 333 347.
    • (2005) Developmental and Comparative Immunology , vol.29 , pp. 333-347
    • Ewart, K.V.1    Belanger, J.C.2    Williams, J.3    Karakach, T.4    Penny, S.5    Tsoi, S.C.M.6    Richards, R.C.7    Douglas, S.E.8
  • 10
    • 29144462664 scopus 로고    scopus 로고
    • An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar)
    • doi: 10.1186/1471-2164-6-171
    • Hagen-Larsen, H., Laerdahl, J. K., Panitz, F., Adzhubei, A. Høyheim, B 2005). An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar). BMC Genomics 6, 171. doi: 10.1186/1471-2164-6-171
    • (2005) BMC Genomics , vol.6171
    • Hagen-Larsen, H.1    Laerdahl, J.K.2    Panitz, F.3    Adzhubei, A.4    Høyheim, B.5
  • 11
    • 4644267171 scopus 로고    scopus 로고
    • Molecular cloning and functional characterization of fatty acyl desaturase and elongase cDNAs involved in the production of eicosapentaenoic and docosahexanoic acids from α-linolenic acid in Atlantic salmon (Salmo salar)
    • Hastings, N., Agaba, M. K., Tocher, D. R., Zheng, X., Dickson, C. A., Dick, J. R. Teale, A. J 2004). Molecular cloning and functional characterization of fatty acyl desaturase and elongase cDNAs involved in the production of eicosapentaenoic and docosahexanoic acids from α-linolenic acid in Atlantic salmon (Salmo salar). Marine Biotechnology 6, 463 474.
    • (2004) Marine Biotechnology , vol.6 , pp. 463-474
    • Hastings, N.1    Agaba, M.K.2    Tocher, D.R.3    Zheng, X.4    Dickson, C.A.5    Dick, J.R.6    Teale, A.J.7
  • 12
    • 26444552886 scopus 로고    scopus 로고
    • Dietary rapeseed oil affects the expression of genes involved in hepatic lipid metabolism in Atlantic salmon (Salmo salar L.)
    • Jordal, A.-E. O., Torstensen, B. E., Tsoi, S., Tocher, D. R., Lall, S. P. Douglas, S. E 2005). Dietary rapeseed oil affects the expression of genes involved in hepatic lipid metabolism in Atlantic salmon (Salmo salar L.). Journal of Nutrition 135, 2355 2361.
    • (2005) Journal of Nutrition , vol.135 , pp. 2355-2361
    • Jordal, A.-E.O.1    Torstensen, B.E.2    Tsoi, S.3    Tocher, D.R.4    Lall, S.P.5    Douglas, S.E.6
  • 14
    • 33644830970 scopus 로고    scopus 로고
    • Transcriptional analysis of LPS-stimulated activation of trout (Oncorhynchus mykiss) monocyte/macrophage cells in primary culture treated with cortisol
    • MacKenzie, S., Iliev, D., Liarte, C., Koskinen, H., Planas, J. V., Goetz, F. W., Molsa, H., Krasnov, A. Tort, L 2006). Transcriptional analysis of LPS-stimulated activation of trout (Oncorhynchus mykiss) monocyte/macrophage cells in primary culture treated with cortisol. Molecular Immunology 43, 1340 1348.
    • (2006) Molecular Immunology , vol.43 , pp. 1340-1348
    • MacKenzie, S.1    Iliev, D.2    Liarte, C.3    Koskinen, H.4    Planas, J.V.5    Goetz, F.W.6    Molsa, H.7    Krasnov, A.8    Tort, L.9
  • 15
    • 0030067189 scopus 로고    scopus 로고
    • Use of a genetically attenuated strain of Aeromonas salmonicida to vaccinate salmonid fish
    • Marsden, M. J., DeVoy, A., Vaughan, L., Foster, T. J. Secombes, C. J 1996). Use of a genetically attenuated strain of Aeromonas salmonicida to vaccinate salmonid fish. Aquaculture International 4, 55 66.
    • (1996) Aquaculture International , vol.4 , pp. 55-66
    • Marsden, M.J.1    Devoy, A.2    Vaughan, L.3    Foster, T.J.4    Secombes, C.J.5
  • 17
    • 33644941076 scopus 로고    scopus 로고
    • Transcriptome response following administration of a live bacterial vaccine in Atlantic salmon (Salmo salar)
    • Martin, S. A. M., Blaney, S. C., Houlihan, D. F. Secombes, C. J 2006). Transcriptome response following administration of a live bacterial vaccine in Atlantic salmon (Salmo salar). Molecular Immunology 43, 1900 1911.
    • (2006) Molecular Immunology , vol.43 , pp. 1900-1911
    • Martin, S.A.M.1    Blaney, S.C.2    Houlihan, D.F.3    Secombes, C.J.4
  • 19
    • 0003848536 scopus 로고
    • National Research Council (NRC). Washington, DC: National Academy Press.
    • National Research Council (NRC) 1993). Nutrient Requirements of Fish. Washington, DC: National Academy Press.
    • (1993) Nutrient Requirements of Fish.
  • 20
    • 28344455318 scopus 로고    scopus 로고
    • Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon
    • doi: 10.1186/1471-2199-6-21
    • Olsvik, P. A., Lie, K. K., Jordal, A.-E., Nilsen, T. O. Hordvik, I 2005). Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon. BMC Molecular Biology 6, 21. doi: 10.1186/1471-2199-6-21
    • (2005) BMC Molecular Biology , vol.621
    • Olsvik, P.A.1    Lie, K.K.2    Jordal, A.-E.3    Nilsen, T.O.4    Hordvik, I.5
  • 22
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M. W 2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29, 2002 2007.
    • (2001) Nucleic Acids Research , vol.29 , pp. 2002-2007
    • Pfaffl, M.W.1
  • 23
    • 0036581160 scopus 로고    scopus 로고
    • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • Pfaffl, M. W., Horgan, G. W. Dempfle, L 2002). Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research 30, 9 36.
    • (2002) Nucleic Acids Research , vol.30 , pp. 9-36
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 27
    • 34247898825 scopus 로고    scopus 로고
    • Microarray gene expression analysis in atrophying rainbow trout muscle: A unique nonmammalian muscle degradation model
    • Salem, M., Kenney, P. B., Rexroad, C. E. Yao, J. B 2006). Microarray gene expression analysis in atrophying rainbow trout muscle: a unique nonmammalian muscle degradation model. Physiological Genomics 28, 33 45.
    • (2006) Physiological Genomics , vol.28 , pp. 33-45
    • Salem, M.1    Kenney, P.B.2    Rexroad, C.E.3    Yao, J.B.4
  • 28
    • 0032791693 scopus 로고    scopus 로고
    • Development of farmed fish: A nutritionally necessary alternative to meat
    • Sargent, J. R. Tacon, A. G. R 1999). Development of farmed fish: a nutritionally necessary alternative to meat. Proceedings of the Nutrition Society 58, 377 383.
    • (1999) Proceedings of the Nutrition Society , vol.58 , pp. 377-383
    • Sargent, J.R.1    Tacon, A.G.R.2
  • 32
    • 44949214943 scopus 로고    scopus 로고
    • Transcriptome analyses of Amoebic gill disease-affected Atlantic Salmon (Salmo salar) tissues reveal localized host gene suppression
    • in press). doi: 10.1007/s10126-007-9075-4
    • Wynne, J. W., O'Sullivan, M. G., Cook, M. T., Stone, G., Nowak, B. F., Lovell, D. R. Elliott, N. G. (2008). Transcriptome analyses of Amoebic gill disease-affected Atlantic Salmon (Salmo salar) tissues reveal localized host gene suppression. Marine Biotechnology (in press). doi: 10.1007/s10126-007-9075- 4
    • (2008) Marine Biotechnology
    • Wynne, J.W.1    O'Sullivan, M.G.2    Cook, M.T.3    Stone, G.4    Nowak, B.F.5    Lovell, D.R.6    Elliott, N.G.7
  • 33
    • 2442490876 scopus 로고    scopus 로고
    • Effects of diets containing vegetable oil on expression of genes involved in polyunsaturated fatty acid biosynthesis in liver of Atlantic salmon (Salmo salar)
    • Zheng, X., Tocher, D. R., Dickson, C. A., Bell, J. G. Teale, A. J 2004). Effects of diets containing vegetable oil on expression of genes involved in polyunsaturated fatty acid biosynthesis in liver of Atlantic salmon (Salmo salar). Aquaculture 236, 467 483.
    • (2004) Aquaculture , vol.236 , pp. 467-483
    • Zheng, X.1    Tocher, D.R.2    Dickson, C.A.3    Bell, J.G.4    Teale, A.J.5
  • 34
    • 15444361997 scopus 로고    scopus 로고
    • Highly unsaturated fatty acid synthesis in vertebrates: New insights with the cloning and characterisation of a Δ6 desaturase of Atlantic salmon
    • Zheng, X., Tocher, D. R., Dickson, C. A., Dick, J. R., Bell, J. G. Teale, A. J 2005a). Highly unsaturated fatty acid synthesis in vertebrates: new insights with the cloning and characterisation of a Δ6 desaturase of Atlantic salmon. Lipids 40, 13 24.
    • (2005) Lipids , vol.40 , pp. 13-24
    • Zheng, X.1    Tocher, D.R.2    Dickson, C.A.3    Dick, J.R.4    Bell, J.G.5    Teale, A.J.6
  • 35
    • 18144395794 scopus 로고    scopus 로고
    • Environmental and dietary influences on highly unsaturated fatty acid biosynthesis and expression of fatty acyl desaturase and elongase genes in liver of Atlantic salmon (Salmo salar)
    • Zheng, X., Torstensen, B. E., Tocher, D. R., Dick, J. R., Henderson, R. J. Bell, J. G 2005b). Environmental and dietary influences on highly unsaturated fatty acid biosynthesis and expression of fatty acyl desaturase and elongase genes in liver of Atlantic salmon (Salmo salar). Biochimica et Biophysica Acta 1734, 13 24.
    • (2005) Biochimica et Biophysica Acta , vol.1734 , pp. 13-24
    • Zheng, X.1    Torstensen, B.E.2    Tocher, D.R.3    Dick, J.R.4    Henderson, R.J.5    Bell, J.G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.