Comparing RNA secondary structures based on 2D graphical representation

Chemical Physics Letters

Volumn 458, Issue 1-3, 2008, Pages 180-185

  Zhang, Yi ^a   Qiu, JiQing ^a   Su, LianQing ^a  

^a HEBEI UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GRAPH THEORY; MOLECULAR STRUCTURE;

FREE BASES; RNA SECONDARY STRUCTURES;

RNA;

EID: 44649087645     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2008.04.067     Document Type: Article

References (36)

1. Durbin R., Eddy S.R., et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1998), Cambridge University Press
2. Mount D.W. Bioinformatics: Sequence and Genome Analysis. second edn. (2004), Cold Spring Harbor Press
3. Shapiro B., and Zhang K. Comput. Appl. Biosci. 6 (1990) 309
4. Hofacker I.L., Bernhart S.H.F., and Stadler P.F. Bioinformatics 20 (2004) 2222
5. McCaskill J.S. Biopolymers 29 (1990) 1105
6. Liao B., and Wang T.M. J. Biomol. Struct. Dyn. 21 (2004) 827
7. Randic M., and Basak S.C. J. Chem. Inf. Comput. Sci. 41 (2001) 561
8. Zupan J., and Randic M. J. Chem. Inf. Comput. Sci. 45 (2005) 309
9. Guo X.F., and Nandy A. Chem. Phys. Lett. 369 (2003) 361
10. Randic M., Vracko M., Lers N., and Plavsic D. Chem. Phys. Lett. 371 (2003) 202
11. Li C., Wang A.-H., and Xing L. J. Comput. Chem. 28 (2007) 508
12. Liu N., and Wang T.M. BMC Bioinformatics 7 (2006) 493
13. Liao B., Ding K., and Wang T.M. J. Biomol. Struct. Dyn. 22 (2005) 455
14. Zhu W., Liao B., and Ding K. J. Mol. Struct. THEOCHEM 757 (2005) 193
15. J. Feng, T.M. Wang, Chem. Phys. Lett., in press, doi:10.1016/j.cplett.2008.01.041.
16. Nandy A., Harle M., and Basak S.C. ARKIVOC ix (2006) 211
17. Reusken C., and Bol J.F. Nucleic Acids Res. 24 (1996) 2660
18. Brown J. Nucleic Acids Res. 26 (1998) 351
19. Schmitt M., Bennett J., and Dairaghi D. FASEB J. 7 (1993) 208
20. Wang J., and Zhang Y. Chem. Phys. Lett. 423 (2006) 50
21. Koper-Zwarthoff E.C., Brederode F.T., Walstra P., and Bol J.F. Nucleic Acids Res. 7 (1979) 1887
22. Scott S.W., and Ge X. J. Gen. Virol. 76 (1995) 957
23. Koper-Zwarthoff E.C., and Bol J.F. Nucleic Acids Res. 8 (1980) 3307
24. Cornelissen B.J.C., Janssen H., Zuidema D., and Bol J.F. Nucleic Acids Res. 12 (1984) 2427
25. Alrefai R.H., Shicl P.J., Domier L.L., Arcy C.J.D., Berger P.H., and Korban S.S. J. Gen. Virol. 75 (1994) 2847
26. Scott S.W., and Ge X. J. Gen. Virol. 76 (1995) 1801
27. Bachman E.J., Scott S.W., Xin G., and Vance V.B. Virology 201 (1994) 127
28. Houser-Scott F., Baer M.L., Liem K.F., Cai J.M., and Gehrke L. J. Virol. 68 (1994) 2194
29. Randic M., Vracko M., Lers N., and Plavsic D. Chem. Phys. Lett. 368 (2003) 1
30. Randic M., Guo X.F., and Basak S.C. J. Chem. Inf. Comput. Sci. 41 (2001) 619
31. Liao B., and Wang T.M. J. Biomol. Struct. Dyn. 21 (2004) 827
32. Liao B., Ding K.Q., and Wang T.M. J. Biomol. Struct. Dyn. 22 (2005) 455
33. Yao Y.H., Nan X.Y., and Wang T.M. J. Comput. Chem. 26 (2005) 1339
34. Bai F.L., Zhu W., and Wang T.M. Chem. Phys. Lett. 408 (2005) 258
35. Liu L.W., and Wang T.M. J. Math. Chem. 42 3 (2007) 595
36. Collins L.J., Moulton V., and Penny D. J. Mol. Evol. 51 (2000) 194