메뉴 건너뛰기




Volumn 1, Issue 4, 2003, Pages 167-180

Comparison of genotypic-based microbial source tracking methods requiring a host origin database

Author keywords

Escherichia coli; Fecal enterococci; Pulsed field gel electrophoresis; rep PCR; Ribotyping

Indexed keywords

ANIMAL; ARTICLE; BIRD; CATTLE; COMPARATIVE STUDY; DOG; ENTEROCOCCUS; ESCHERICHIA COLI; FECES; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; LABORATORY DIAGNOSIS; MICROBIOLOGY; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; UNITED STATES;

EID: 4444355094     PISSN: 14778920     EISSN: None     Source Type: Journal    
DOI: 10.2166/wh.2003.0019     Document Type: Article
Times cited : (63)

References (27)
  • 1
    • 0032895142 scopus 로고    scopus 로고
    • Multiphasic analysis of xanthomonads causing bacterial spot disease on tomato and pepper in the Caribbean and Central America: Evidence for common lineages within and between countries
    • Bouzar, H., Jones, J. B., Stall, R. E., Louws, F. J., Schneider, M., Rademaker J. L.W., de Bruijn, F. J. & Jackson, L. E. 1999 Multiphasic analysis of xanthomonads causing bacterial spot disease on tomato and pepper in the Caribbean and Central America: Evidence for common lineages within and between countries. Phytopathol. 89, 328-335.
    • (1999) Phytopathol , vol.89 , pp. 328-335
    • Bouzar, H.1    Jones, J.B.2    Stall, R.E.3    Louws, F.J.4    Schneider, M.5    Rademaker, J.L.W.6    De Bruijn, F.J.7    Jackson, L.E.8
  • 2
  • 3
    • 0037337209 scopus 로고    scopus 로고
    • Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal E. Coli from humans and animals
    • Carson, C. A., Shear, B. L., Ellersieck, M. R. & Schnell, J. D. 2003 Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal E. coli from humans and animals. Appl. Environ. Microbiol. 69, 1836-1839.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1836-1839
    • Carson, C.A.1    Shear, B.L.2    Ellersieck, M.R.3    Schnell, J.D.4
  • 4
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • de Bruijn, F. J. 1992 Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58, 2180-2187.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 5
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice, L. R. 1945 Measures of the amount of ecologic association between species. Ecol. 26, 297-302.
    • (1945) Ecol. , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 6
    • 0034130242 scopus 로고    scopus 로고
    • Use of repetitive DNA sequences and the PCR to differentiate E. Coli isolates from human and animal sources
    • Dombek, P. E., Johnson, L. K., Zimmerley, S. T. & Sadowsky, M. J. 2000 Use of repetitive DNA sequences and the PCR to differentiate E. coli isolates from human and animal sources. Appl. Environ. Microbiol. 66, 2572-2577.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2572-2577
    • Dombek, P.E.1    Johnson, L.K.2    Zimmerley, S.T.3    Sadowsky, M.J.4
  • 7
    • 0029907539 scopus 로고    scopus 로고
    • An introduction to the hows and whys of molecular typing
    • Farber, J. M. 1996. An introduction to the hows and whys of molecular typing. J. Food Protect. 59, 1091-1101.
    • (1996) J. Food Protect. , vol.59 , pp. 1091-1101
    • Farber, J.M.1
  • 8
    • 0037236059 scopus 로고    scopus 로고
    • Putative temporal variability of Escherichia coli ribotypes from yearling steers
    • Jenkins, M. B., Hartel, P. G., Olexa, T. J. & Stuedemann, J. A. 2003 Putative temporal variability of Escherichia coli ribotypes from yearling steers. J. Environ. Qual. 32, 305-309.
    • (2003) J. Environ. Qual. , vol.32 , pp. 305-309
    • Jenkins, M.B.1    Hartel, P.G.2    Olexa, T.J.3    Stuedemann, J.A.4
  • 9
    • 0027318818 scopus 로고
    • Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains
    • Judd, A. K., Schneider, M., Sadowsky, M. J. & de Bruijn, F. J. 1993 Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains. Appl. Environ. Microbiol. 59, 1702-1708.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1702-1708
    • Judd, A.K.1    Schneider, M.2    Sadowsky, M.J.3    De Bruijn, F.J.4
  • 11
    • 0028889921 scopus 로고
    • Identification of E. Coli strains from cows with clinical mastitis by serotyping and DNA polymorphism patterns with REP and ERIC primers
    • Lipman, L. J. A., de Nijs, A., Lam, T. J. G. M. & Gaastra, W. 1995 Identification of E. coli strains from cows with clinical mastitis by serotyping and DNA polymorphism patterns with REP and ERIC primers. Vet. Microbiol. 43, 13-19.
    • (1995) Vet. Microbiol. , vol.43 , pp. 13-19
    • Lipman, L.J.A.1    De Nijs, A.2    Lam, T.J.G.M.3    Gaastra, W.4
  • 12
    • 0032719005 scopus 로고    scopus 로고
    • The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis
    • Luows, F. J., Rademaker, J. L. W. & de Bruijn, F. J. 1999 The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis. Ann. Rev. Phytopath. 37, 81-125.
    • (1999) Ann. Rev. Phytopath. , vol.37 , pp. 81-125
    • Luows, F.J.1    Rademaker, J.L.W.2    De Bruijn, F.J.3
  • 13
    • 0032904916 scopus 로고    scopus 로고
    • Principles and applications of methods for DNA-based typing of microbial organisms
    • Olive, D. M. & Bean, P. 1999 Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37, 1661-1669.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 14
    • 0032974775 scopus 로고    scopus 로고
    • Discriminant analysis of ribotype profiles of E. Coli for differentiating human and nonhuman sources of fecal pollution
    • Parveen, S., Portier, K. M., Robinson, K., Edmiston, L. & Tamplin, M. L. 1999 Discriminant analysis of ribotype profiles of E. coli for differentiating human and nonhuman sources of fecal pollution. Appl. Environ. Microbiol. 65, 3142-3147.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3142-3147
    • Parveen, S.1    Portier, K.M.2    Robinson, K.3    Edmiston, L.4    Tamplin, M.L.5
  • 15
    • 0035255738 scopus 로고    scopus 로고
    • Phenotypic and genotypic characterization of human and nonhuman Escherichia coli
    • Parveen, S., Hodge, N. C., Stall, R. E., Farrah, S. R. & Tamplin, M. L. 2001 Phenotypic and genotypic characterization of human and nonhuman Escherichia coli . Wat. Res. 35, 379-386.
    • (2001) Wat. Res. , vol.35 , pp. 379-386
    • Parveen, S.1    Hodge, N.C.2    Stall, R.E.3    Farrah, S.R.4    Tamplin, M.L.5
  • 16
    • 0002924916 scopus 로고    scopus 로고
    • Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis
    • (ed. G. Caetano-Anollés & P. M. Gresshoff) J. Wiley and Sons, New York
    • Rademaker, J. L. W. & de Bruijn, F. J. 1997 Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In DNA Markers: Protocols, Applications, and Overviews (ed. G. Caetano-Anollés & P. M. Gresshoff), pp. 151-171. J. Wiley and Sons, New York.
    • (1997) DNA Markers: Protocols, Applications, and Overviews , pp. 151-171
    • Rademaker, J.L.W.1    De Bruijn, F.J.2
  • 17
    • 0037227084 scopus 로고    scopus 로고
    • Diversity, frequency, and persistence of Escherichia coli O157 strains from range cattle environments
    • Renter, D. G., Sargeant, J. M., Oberst, R. D. & Samadpour, M. 2003 Diversity, frequency, and persistence of Escherichia coli O157 strains from range cattle environments. Appl. Environ. Microbiol. 69, 542-547.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 542-547
    • Renter, D.G.1    Sargeant, J.M.2    Oberst, R.D.3    Samadpour, M.4
  • 18
    • 0038643639 scopus 로고    scopus 로고
    • Use of endogenous repeated sequences to fingerprint bacterial genomic DNA
    • (ed. F. J. de Bruijn, J. R. Lupski & G. M. Weinstock), pp. 394-411. Chapman and Hall, New York
    • Sadowsky, M. J. & Hur, H. G. 1998 Use of endogenous repeated sequences to fingerprint bacterial genomic DNA, pp. 399-413. In Bacterial Genomes: Physical Structure and Analysis (ed. F. J. de Bruijn, J. R. Lupski & G. M. Weinstock), pp. 394-411. Chapman and Hall, New York.
    • (1998) Bacterial Genomes: Physical Structure and Analysis , pp. 399-413
    • Sadowsky, M.J.1    Hur, H.G.2
  • 19
    • 0029809138 scopus 로고    scopus 로고
    • Use of repetitive intergenic DNA sequences to classify pathogenic and disease-suppressive Streptomyces strains
    • Sadowsky, M. J., Kinkel, L. L., Bowers, J. H. & Schottel, J. L. 1996 Use of repetitive intergenic DNA sequences to classify pathogenic and disease-suppressive Streptomyces strains. Appl. Environ. Microbiol. 62, 3489-3493.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3489-3493
    • Sadowsky, M.J.1    Kinkel, L.L.2    Bowers, J.H.3    Schottel, J.L.4
  • 21
    • 0003252192 scopus 로고    scopus 로고
    • Preparation of plasmid DNA by lysis with SDS
    • Coldspring Harbor Laboratory Press, New York
    • Sambrook, J. & Russel, D. 2001 Preparation of plasmid DNA by lysis with SDS. In Molecular Cloning, 3rd edition, pp. 1.55-1.58. Coldspring Harbor Laboratory Press, New York.
    • (2001) Molecular Cloning, 3rd Edition
    • Sambrook, J.1    Russel, D.2
  • 22
    • 0037313120 scopus 로고    scopus 로고
    • Geographical variation in ribotype profiles of E. Coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida
    • Scott, T. M., Parveen, S., Portier, K. M., Rose, J. B., Tamplin, M. L., Farrah, S. R., Koo, A. & Lukasik, J. 2003 Geographical variation in ribotype profiles of E. coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida. Appl. Environ. Microbiol. 69, 1089-1092.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1089-1092
    • Scott, T.M.1    Parveen, S.2    Portier, K.M.3    Rose, J.B.4    Tamplin, M.L.5    Farrah, S.R.6    Koo, A.7    Lukasik, J.8
  • 24
    • 84871885887 scopus 로고    scopus 로고
    • American Public Health Association/American Water Works Association/Water Environment Federation, Washington, DC
    • Standard Methods for the Examination of Water and Wastewater 1998 20th edition, American Public Health Association/American Water Works Association/Water Environment Federation, Washington, DC.
    • Standard Methods for the Examination of Water and Wastewater 1998 20th Edition
  • 25
    • 0031156837 scopus 로고    scopus 로고
    • How to select and interpret molecular strain typing methods for epidemiological studies of bacterial infections: A review for healthcare epidemiologists
    • Tenover, F. C., Arbeit, R. D. & Goering, R. V. 1997 How to select and interpret molecular strain typing methods for epidemiological studies of bacterial infections: A review for healthcare epidemiologists. Infect. Cont. Hosp. Epidemiol. 18, 426-439.
    • (1997) Infect. Cont. Hosp. Epidemiol. , vol.18 , pp. 426-439
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3
  • 27
    • 0001275542 scopus 로고    scopus 로고
    • Repetitive sequence based PCR (rep-PCR) DNA fingerprinting of bacterial genomes
    • (ed. F. J. de Bruijn, J. R. Lupski & G. M. Weinstock) Chapman and Hall, New York
    • Versalovic, J., de Bruijn, F. J. & Lupski, J. R. 1998 Repetitive sequence based PCR (rep-PCR) DNA fingerprinting of bacterial genomes. In Bacterial Genomes: Physical Structure and Analysis (ed. F. J. de Bruijn, J. R. Lupski & G. M. Weinstock), pp. 437-454. Chapman and Hall, New York.
    • (1998) Bacterial Genomes: Physical Structure and Analysis , pp. 437-454
    • Versalovic, J.1    De Bruijn, F.J.2    Lupski, J.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.