Modeling abundance effects in distance sampling

Ecology

Volumn 85, Issue 6, 2004, Pages 1591-1597

  Royle, J Andrew ^a   Dawson, Deanna K ^b   Bates, Scott ^c  

^a U S FISH AND WILDLIFE SERVICE   (United States)

^b PATUXENT WILDLIFE RESEARCH CENTER   (United States)

^c NATIONAL PARK SERVICE   (United States)

Author keywords

Abundance estimation; Avian point counts; Distance sampling methodology; Mixture models; Ovenbird; Random effects

Indexed keywords

ABUNDANCE ESTIMATION; AVIFAUNA; ECOLOGICAL MODELING; POPULATION DENSITY; SAMPLING;

ANIMALIA; AVES; GALLIFORMES; SEIURUS; SEIURUS AUROCAPILLUS;

EID: 4444318458     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/03-3127     Document Type: Article

References (36)

1. Agarwal, D. K., A. E. Gelfand, and S. Citron-Pousty. 2002. Zero-inflated models with application to spatial count data. Environmental and Ecological Statistics 9:341-355.
2. Agresti, A. 2002. Categorical data analysis. Second edition. Wiley Interscience, Hoboken, New Jersey, USA.
3. Beadell, J., R. Greenberg, S. Droege, and J. A. Royle. 2003. Distribution, abundance, and habitat affinities of the coastal plain swamp sparrow. Wilson Bulletin 115:38-44.
4. Bhattacharya, S. K., and M. S. Holla. 1965. On a discrete distribution with special reference to the theory of accident proneness. Journal of the American Statistical Association 60:1060-1066.
5. Boyce, M. S., D. I. MacKenzie, B. F. J. Manly, M. A. Haroldson, and D. Moody. 2001. Negative binomial models for abundance estimation of multiple closed populations. Journal of Wildlife Management 65:498-509.
6. Brand, L. A., and T. L. Georgea. 2001. Response of passerine birds to forest edge in coast redwood forest fragments. Auk 118:678-686.
7. Buckland, S. T., D. R. Anderson, K. P. Burnham, J. L. Laake, D. L. Borchers, and L. Thomas. 2001. Introduction to distance sampling. Oxford University Press, New York, New York, USA.
8. Burnham, K. P., and D. R. Anderson. 1998. Model selection and inference: a practical information-theoretic approach. Springer-Verlag, New York, New York, USA.
9. Dixon, P. M. 2002. Bootstrap resampling. Encyclopedia of Environmetrics 1:212-220.
10. Farnsworth, G. L., K. H. Pollock, J. D. Nichols, T. R. Simons, J. E. Hines, and J. R. Sauer. 2002. A removal model for estimating detection probabilities from point-count surveys. Auk 119:414-425.
11. Fewster, R. M., S. T. Buckland, G. M. Siriwardena, S. R. Baillie, and J. D. Wilson. 2000. Analysis of population trends for farmland birds using generalized additive models. Ecology 81:1970-1984.
12. Friesen, L. E., P. F. J. Eagles, and R. J. Mackay. 1995. Effects of residential development on forest-dwelling Neotropical migrant songbirds. Conservation Biology 9:1408-1414.
13. Gu, W., and R. K. Swihart. 2004. Absent or undetected? Effects of non-detection of species occurrence on wildlife-habitat models. Biological Conservation 116:195-203.
14. Medley, S. L., and S. T. Buckland. 2004. Spatial models for line transect sampling. Journal of Agricultural, Biological and Environmental Statistics, in press.
15. Medley, S. L., S. T. Buckland, and D. L. Borchers. 1999. Spatial modelling from line transect data. Journal of Cetacean Research and Management 1:255-264.
16. Hovind, H. J., and C. E. Rieck. 1970. Basal area and point-sampling: interpretation and application. Technical Bulletin Number 23. Wisconsin Department of Natural Resources, Madison, Wisconsin, USA.
17. Hutto, R. L. 1995. Composition of bird communities following stand-replacement fires in Northern Rocky Mountain (U.S.A.) conifer forests. Conservation Biology 9:1041-1058.
18. Ihaka, R., and R. Gentleman. 1996. R: a language for data analysis and graphics. Journal of Computational and Graphical Statistics 5:299-314.
19. Kendall, W. L., J. D. Nichols, and J. E. Hines. 1997. Estimating temporary emigration using capture-recapture data with Pollock's robust design. Ecology 78:563-578.
20. Laird, N. M., and J. H. Ware. 1982. Random-effects models for longitudinal data. Biometrics 38:963-974.
21. Marques, F. F. C., and S. T. Buckland. 2003. Incorporating covariates into standard line transect analyses. Biometrics 59:924-935.
22. Nichols, J. D., J. E. Hines, J. R. Sauer, F. W. Fallon, J. E. Fallon, and P. J. Heglund. 2000. A double-observer approach for estimating detection probability and abundance from point counts. Auk 117:393-408.
23. Puig, P. 2003. Characterizing additively closed discrete models by a property of their maximum likelihood estimators, with an application to generalized Hermite distributions. Journal of the American Statistical Association 98:687-692.
24. Ramsey, F. L., and K. Harrison. 2004. A closer look at detectability. Environmental and Ecological Statistics 11:73-84.
25. Ramsey, F. L., V. Wildman, and J. Engbring. 1987. Covariate adjustments to effective area in variable-area wildlife surveys. Biometrics 43:1-11.
26. Robbins, C. S., D. K. Dawson, and B. A. Dowell. 1989. Habitat area requirements of breeding forest birds of the Middle Atlantic States. Wildlife Monographs 103:1-34.
27. Robinson, G. K. 1991. That BLUP is a good thing: the estimation of random effects (with discussion). Statistical Science 6:15-51.
28. Rosenstock, S. S., D. R. Anderson, K. M. Giesen, T. Leukering, and M. F. Carter. 2002. Land-bird counting techniques: current practices and an alternative. Auk 119:46-53.
29. Royle, J. A. 2004. N-mixture models for estimating population size from spatially replicated counts. Biometrics 60:108-115.
30. Royle, J. A., and J. D. Nichols. 2003. Estimating abundance from repeated presence-absence data or point counts. Ecology 84:777-790.
31. Sanathanan, L. 1972. Estimating the size of a multinomial population. Annals of Mathematical Statistics 43:142-152.
32. Vernier, P. R., F. K. A. Schmiegelow, and S. G. Cumming. 2002. Modeling bird abundance from forest inventory data in the boreal mixed-wood forests of Canada. Pages 559-571 in J. M. Scott, P. J. Heglund, M. L. Morrison, J. B. Haufler, M. G. Raphael, W. A. Wall, and F. B. Samson, editors. Predicting species occurrences: issues of accuracy and scale. Island Press, Washington, D.C., USA.
33. Vincent, P. J., and J. M. Haworth. 1983. Poisson regression models of species abundance. Journal of Biogeography 10:153-160.
34. Williams, B. K., J. D. Nichols, and M. J. Conroy. 2002. Analysis and management of animal populations. Academic Press, San Diego, California, USA.
35. Young, J. S., and R. L. Hutto. 1999. Habitat and landscape factors affecting Cowbird distribution in the Northern Rockies. Studies in Avian Biology 18:41-51.
36. Young, J. S., and R. L. Hutto. 2002. Use of a landbird monitoring database to explore effects of partial-cut timber harvesting. Forest Science 48:373-378.