-
1
-
-
0036531903
-
'Omic' approaches for unraveling signaling networks
-
H. Zhu, and M. Snyder 'Omic' approaches for unraveling signaling networks Curr Opin Cell Biol 14 2002 173 179
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 173-179
-
-
Zhu, H.1
Snyder, M.2
-
2
-
-
0034649566
-
Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
S.A. Goff, D. Ricke, T.H. Lan, G. Presting, R. Wang, M. Dunn, J. Glazebrook, A. Sessions, P. Oeller, and H. Varma A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) Science 296 2002 92 100
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
-
4
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
J. Yu, S. Hu, J. Wang, G.K. Wong, S. Li, B. Liu, Y. Deng, L. Dai, Y. Zhou, and X. Zhang A draft sequence of the rice genome (Oryza sativa L. ssp. indica) Science 296 2002 79 92
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
-
5
-
-
0242300620
-
Empirical analysis of transcriptional activity in the Arabidopsis genome
-
K. Yamada, J. Lim, J.M. Dale, H. Chen, P. Shinn, C.J. Palm, A.M. Southwick, H.C. Wu, C. Kim, and M. Nguyen Empirical analysis of transcriptional activity in the Arabidopsis genome Science 302 2003 842 846
-
(2003)
Science
, vol.302
, pp. 842-846
-
-
Yamada, K.1
Lim, J.2
Dale, J.M.3
Chen, H.4
Shinn, P.5
Palm, C.J.6
Southwick, A.M.7
Wu, H.C.8
Kim, C.9
Nguyen, M.10
-
6
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
V.G. Tusher, R. Tibshirani, and G. Chu Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci USA 98 2001 5116 5121
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
7
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
X. Cui, and G.A. Churchill Statistical tests for differential expression in cDNA microarray experiments Genome Biol 4 2003 210
-
(2003)
Genome Biol
, vol.4
, pp. 210
-
-
Cui, X.1
Churchill, G.A.2
-
9
-
-
0036805329
-
Bridging structural biology and genomics: Assessing protein interaction data with known complexes
-
A.M. Edwards, B. Kus, R. Jansen, D. Greenbaum, J. Greenblatt, and M. Gerstein Bridging structural biology and genomics: assessing protein interaction data with known complexes Trends Genet 18 2002 529 536
-
(2002)
Trends Genet
, vol.18
, pp. 529-536
-
-
Edwards, A.M.1
Kus, B.2
Jansen, R.3
Greenbaum, D.4
Greenblatt, J.5
Gerstein, M.6
-
10
-
-
0036598460
-
Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis
-
Y.H. Cheong, H.S. Chang, R. Gupta, X. Wang, T. Zhu, and S. Luan Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis Plant Physiol 129 2002 661 677
-
(2002)
Plant Physiol
, vol.129
, pp. 661-677
-
-
Cheong, Y.H.1
Chang, H.S.2
Gupta, R.3
Wang, X.4
Zhu, T.5
Luan, S.6
-
11
-
-
0036671216
-
Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
-
S. Fowler, and M.F. Thomashow Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway Plant Cell 14 2002 1675 1690
-
(2002)
Plant Cell
, vol.14
, pp. 1675-1690
-
-
Fowler, S.1
Thomashow, M.F.2
-
12
-
-
0036909761
-
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
-
J.A. Kreps, Y. Wu, H.S. Chang, T. Zhu, X. Wang, and J.F. Harper Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress Plant Physiol 130 2002 2129 2141
-
(2002)
Plant Physiol
, vol.130
, pp. 2129-2141
-
-
Kreps, J.A.1
Wu, Y.2
Chang, H.S.3
Zhu, T.4
Wang, X.5
Harper, J.F.6
-
13
-
-
0036679053
-
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
-
M. Seki, M. Narusaka, J. Ishida, T. Nanjo, M. Fujita, Y. Oono, A. Kamiya, M. Nakajima, A. Enju, and T. Sakurai Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray Plant J 31 2002 279 292
-
(2002)
Plant J
, vol.31
, pp. 279-292
-
-
Seki, M.1
Narusaka, M.2
Ishida, J.3
Nanjo, T.4
Fujita, M.5
Oono, Y.6
Kamiya, A.7
Nakajima, M.8
Enju, A.9
Sakurai, T.10
-
14
-
-
0038372467
-
Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping
-
J. Glazebrook, W. Chen, B. Estes, H.S. Chang, C. Nawrath, J.P. Metraux, T. Zhu, and F. Katagiri Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping Plant J 34 2003 217 228
-
(2003)
Plant J
, vol.34
, pp. 217-228
-
-
Glazebrook, J.1
Chen, W.2
Estes, B.3
Chang, H.S.4
Nawrath, C.5
Metraux, J.P.6
Zhu, T.7
Katagiri, F.8
-
15
-
-
0037259469
-
ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense
-
O. Lorenzo, R. Piqueras, J.J. Sanchez-Serrano, and R. Solano ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense Plant Cell 15 2003 165 178
-
(2003)
Plant Cell
, vol.15
, pp. 165-178
-
-
Lorenzo, O.1
Piqueras, R.2
Sanchez-Serrano, J.J.3
Solano, R.4
-
16
-
-
9144230726
-
Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
-
M.A. Rabbani, K. Maruyama, H. Abe, M.A. Khan, K. Katsura, Y. Ito, K. Yoshiwara, M. Seki, K. Shinozaki, and K. Yamaguchi-Shinozaki Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses Plant Physiol 133 2003 1755 1767
-
(2003)
Plant Physiol
, vol.133
, pp. 1755-1767
-
-
Rabbani, M.A.1
Maruyama, K.2
Abe, H.3
Khan, M.A.4
Katsura, K.5
Ito, Y.6
Yoshiwara, K.7
Seki, M.8
Shinozaki, K.9
Yamaguchi-Shinozaki, K.10
-
17
-
-
0036010572
-
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
-
W. Chen, N.J. Provart, J. Glazebrook, F. Katagiri, H.S. Chang, T. Eulgem, F. Mauch, S. Luan, G. Zou, and S.A. Whitham Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses Plant Cell 14 2002 559 574
-
(2002)
Plant Cell
, vol.14
, pp. 559-574
-
-
Chen, W.1
Provart, N.J.2
Glazebrook, J.3
Katagiri, F.4
Chang, H.S.5
Eulgem, T.6
Mauch, F.7
Luan, S.8
Zou, G.9
Whitham, S.A.10
-
18
-
-
0036137323
-
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
-
G. Thijs, M. Lescot, K. Marchal, S. Rombauts, B. De Moor, P. Rouze, and Y. Moreau A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling Bioinformatics 17 2001 1113 1122
-
(2001)
Bioinformatics
, vol.17
, pp. 1113-1122
-
-
Thijs, G.1
Lescot, M.2
Marchal, K.3
Rombauts, S.4
De Moor, B.5
Rouze, P.6
Moreau, Y.7
-
19
-
-
0001919815
-
Transcriptional control of nutrient partitioning during rice grain filling
-
T. Zhu, P. Budworth, W. Chen, N. Provart, H.-S. Chang, S. Guimil, W. Su, B. Estes, G. Zou, and X. Wang Transcriptional control of nutrient partitioning during rice grain filling Plant Biotech J 1 2003 59 70
-
(2003)
Plant Biotech J
, vol.1
, pp. 59-70
-
-
Zhu, T.1
Budworth, P.2
Chen, W.3
Provart, N.4
Chang, H.-S.5
Guimil, S.6
Su, W.7
Estes, B.8
Zou, G.9
Wang, X.10
-
20
-
-
0033866518
-
Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: Minimal cis-element requirements for endosperm-specific gene expression
-
C. Wu, H. Washida, Y. Onodera, K. Harada, and F. Takaiwa Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression Plant J 23 2000 415 421
-
(2000)
Plant J
, vol.23
, pp. 415-421
-
-
Wu, C.1
Washida, H.2
Onodera, Y.3
Harada, K.4
Takaiwa, F.5
-
21
-
-
0347447343
-
A gene expression map of the Arabidopsis root
-
K. Birnbaum, D.E. Shasha, J.Y. Wang, J.W. Jung, G.M. Lambert, D.W. Galbraith, and P.N. Benfey A gene expression map of the Arabidopsis root Science 302 2003 1956 1960
-
(2003)
Science
, vol.302
, pp. 1956-1960
-
-
Birnbaum, K.1
Shasha, D.E.2
Wang, J.Y.3
Jung, J.W.4
Lambert, G.M.5
Galbraith, D.W.6
Benfey, P.N.7
-
22
-
-
1542542442
-
Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant
-
N. Leonhardt, J.M. Kwak, N. Robert, D. Waner, G. Leonhardt, and J.I. Schroeder Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant Plant Cell 16 2004 596 615
-
(2004)
Plant Cell
, vol.16
, pp. 596-615
-
-
Leonhardt, N.1
Kwak, J.M.2
Robert, N.3
Waner, D.4
Leonhardt, G.5
Schroeder, J.I.6
-
23
-
-
0141453547
-
Generation of Arabidopsis protein chips for antibody and serum screening
-
B. Kersten, T. Feilner, A. Kramer, S. Wehrmeyer, A. Possling, I. Witt, M.I. Zanor, R. Stracke, A. Lueking, and J. Kreutzberger Generation of Arabidopsis protein chips for antibody and serum screening Plant Mol Biol 52 2003 999 1010
-
(2003)
Plant Mol Biol
, vol.52
, pp. 999-1010
-
-
Kersten, B.1
Feilner, T.2
Kramer, A.3
Wehrmeyer, S.4
Possling, A.5
Witt, I.6
Zanor, M.I.7
Stracke, R.8
Lueking, A.9
Kreutzberger, J.10
-
24
-
-
0037447263
-
A network of rice genes associated with stress response and seed development
-
B. Cooper, J.D. Clarke, P. Budworth, J. Kreps, D. Hutchison, S. Park, S. Guimil, M. Dunn, P. Luginbuhl, and C. Ellero A network of rice genes associated with stress response and seed development Proc Natl Acad Sci USA 100 2003 4945 4950
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4945-4950
-
-
Cooper, B.1
Clarke, J.D.2
Budworth, P.3
Kreps, J.4
Hutchison, D.5
Park, S.6
Guimil, S.7
Dunn, M.8
Luginbuhl, P.9
Ellero, C.10
-
25
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
R. Jansen, H. Yu, D. Greenbaum, Y. Kluger, N.J. Krogan, S. Chung, A. Emili, M. Snyder, J.F. Greenblatt, and M. Gerstein A Bayesian networks approach for predicting protein-protein interactions from genomic data Science 302 2003 449 453
-
(2003)
Science
, vol.302
, pp. 449-453
-
-
Jansen, R.1
Yu, H.2
Greenbaum, D.3
Kluger, Y.4
Krogan, N.J.5
Chung, S.6
Emili, A.7
Snyder, M.8
Greenblatt, J.F.9
Gerstein, M.10
-
26
-
-
0037461036
-
Cellerator: Extending a computer algebra system to include biochemical arrows for signal transduction simulations
-
B.E. Shapiro, A. Levchenko, E.M. Meyerowitz, B.J. Wold, and E.D. Mjolsness Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations Bioinformatics 19 2003 677 678
-
(2003)
Bioinformatics
, vol.19
, pp. 677-678
-
-
Shapiro, B.E.1
Levchenko, A.2
Meyerowitz, E.M.3
Wold, B.J.4
Mjolsness, E.D.5
-
27
-
-
0742270971
-
Evidence for complex, collective dynamics and emergent, distributed computation in plants
-
D. Peak, J.D. West, S.M. Messinger, and K.A. Mott Evidence for complex, collective dynamics and emergent, distributed computation in plants Proc Natl Acad Sci USA 101 2004 918 922
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 918-922
-
-
Peak, D.1
West, J.D.2
Messinger, S.M.3
Mott, K.A.4
-
28
-
-
0037249498
-
The Arabidopsis Information Resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
-
S.Y. Rhee, W. Beavis, T.Z. Berardini, G. Chen, D. Dixon, A. Doyle, M. Garcia-Hernandez, E. Huala, G. Lander, and M. Montoya The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community Nucleic Acids Res 31 2003 224 228
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
Chen, G.4
Dixon, D.5
Doyle, A.6
Garcia-Hernandez, M.7
Huala, E.8
Lander, G.9
Montoya, M.10
-
29
-
-
0347968038
-
NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
-
D.J. Craigon, N. James, J. Okyere, J. Higgins, J. Jotham, and S. May NASCArrays: a repository for microarray data generated by NASC's transcriptomics service Nucleic Acids Res 32 Database issue 2004 D575 D577
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Craigon, D.J.1
James, N.2
Okyere, J.3
Higgins, J.4
Jotham, J.5
May, S.6
-
30
-
-
0035162272
-
Database resources of the National Center for Biotechnology Information
-
D.L. Wheeler, D.M. Church, A.E. Lash, D.D. Leipe, T.L. Madden, J.U. Pontius, G.D. Schuler, L.M. Schriml, T.A. Tatusova, L. Wagner, and B.A. Rapp Database resources of the National Center for Biotechnology Information Nucleic Acids Res 29 2001 11 16
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 11-16
-
-
Wheeler, D.L.1
Church, D.M.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Tatusova, T.A.9
Wagner, L.10
Rapp, B.A.11
-
31
-
-
0035175010
-
The Stanford Microarray Database
-
G. Sherlock, T. Hernandez-Boussard, A. Kasarskis, G. Binkley, J.C. Matese, S.S. Dwight, M. Kaloper, S. Weng, H. Jin, and C.A. Ball The Stanford Microarray Database Nucleic Acids Res 29 2001 152 155
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.C.5
Dwight, S.S.6
Kaloper, M.7
Weng, S.8
Jin, H.9
Ball, C.A.10
-
32
-
-
0037245913
-
BIND: The Biomolecular Interaction Network Database
-
G.D. Bader, D. Betel, and C.W. Hogue BIND: the Biomolecular Interaction Network Database Nucleic Acids Res 31 2003 248 250
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
|