메뉴 건너뛰기




Volumn 17, Issue 6, 2008, Pages 1015-1024

Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity

Author keywords

Cysteine oxidoreduction; Protein recognition; Redox regulation; Thioredoxin h

Indexed keywords

ARGININE; CYSTEINE; DISULFIDE; GLUTAMIC ACID; HYDROGEN; ISOLEUCINE; ISOPROTEIN; METHIONINE; SULFUR; THIOL; THIOREDOXIN; THIOREDOXIN H;

EID: 44349183189     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.083460308     Document Type: Article
Times cited : (27)

References (52)
  • 1
    • 0033775891 scopus 로고    scopus 로고
    • Physiological functions of thioredoxin and thioredoxin reductase
    • Arnér, E.S.J. and Holmgren, A. 2000. Physiological functions of thioredoxin and thioredoxin reductase. Eur. J. Biochem. 267: 6102-6109.
    • (2000) Eur. J. Biochem , vol.267 , pp. 6102-6109
    • Arnér, E.S.J.1    Holmgren, A.2
  • 2
    • 0242299201 scopus 로고    scopus 로고
    • Dissecting subunit interfaces in homodimeric proteins
    • Bahadur, R.P., Chakrabarti, P., Rodier, F., and Janin, J. 2003. Dissecting subunit interfaces in homodimeric proteins. Proteins 53: 708-719.
    • (2003) Proteins , vol.53 , pp. 708-719
    • Bahadur, R.P.1    Chakrabarti, P.2    Rodier, F.3    Janin, J.4
  • 4
    • 20044367629 scopus 로고    scopus 로고
    • Redox regulation: A broadening horizon
    • Buchanan, B.B. and Balmer, Y. 2005. Redox regulation: A broadening horizon. Annu. Rev. Plant Biol. 56: 187-220.
    • (2005) Annu. Rev. Plant Biol , vol.56 , pp. 187-220
    • Buchanan, B.B.1    Balmer, Y.2
  • 6
    • 34047204205 scopus 로고    scopus 로고
    • 3′-Phosphoadenosine-5′-phosphosulfate reductase in complex with thioredoxin: A structural snapshot in the catalytic cycle
    • Chartron, J., Shiau, C., Stout, C.D., and Carroll, K.S. 2007. 3′-Phosphoadenosine-5′-phosphosulfate reductase in complex with thioredoxin: A structural snapshot in the catalytic cycle. Biochemistry 46: 3942-3951.
    • (2007) Biochemistry , vol.46 , pp. 3942-3951
    • Chartron, J.1    Shiau, C.2    Stout, C.D.3    Carroll, K.S.4
  • 7
    • 0031442195 scopus 로고    scopus 로고
    • General acid/base catalysis in the active site of Escherichia coli thioredoxin
    • Chivers, P.T. and Raines, R.T. 1997. General acid/base catalysis in the active site of Escherichia coli thioredoxin. Biochemistry 36: 15810-15816.
    • (1997) Biochemistry , vol.36 , pp. 15810-15816
    • Chivers, P.T.1    Raines, R.T.2
  • 8
    • 0028103275 scopus 로고    scopus 로고
    • Collaborative Computational Project, Number 4. 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D50: 760-763.
    • Collaborative Computational Project, Number 4. 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D50: 760-763.
  • 9
    • 13544272603 scopus 로고    scopus 로고
    • Solution structure of a natural CPPC active site variant, the reduced form of thioredoxin h1 from poplar
    • Coudevylle, N., Thureau, A., Hemmerlin, C., Gelhaye, E., Jacquot, J.P., and Cung, M.T. 2005. Solution structure of a natural CPPC active site variant, the reduced form of thioredoxin h1 from poplar. Biochemistry 44: 2001-2008.
    • (2005) Biochemistry , vol.44 , pp. 2001-2008
    • Coudevylle, N.1    Thureau, A.2    Hemmerlin, C.3    Gelhaye, E.4    Jacquot, J.P.5    Cung, M.T.6
  • 10
    • 2442610947 scopus 로고    scopus 로고
    • The architecture of the binding site in redox protein complexes: Implications for fast dissociation
    • Crowley, P.B. and Carrondo, M.A. 2004. The architecture of the binding site in redox protein complexes: Implications for fast dissociation. Proteins 55: 603-612.
    • (2004) Proteins , vol.55 , pp. 603-612
    • Crowley, P.B.1    Carrondo, M.A.2
  • 11
  • 12
    • 0032518398 scopus 로고    scopus 로고
    • Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
    • Doublié, S., Tabor, S., Long, A.M., Richardson, C.C., and Ellenberger, T. 1998. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution. Nature 391: 251-258.
    • (1998) Nature , vol.391 , pp. 251-258
    • Doublié, S.1    Tabor, S.2    Long, A.M.3    Richardson, C.C.4    Ellenberger, T.5
  • 13
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. and Cowtan, K. 2004. Coot: Model-building tools for molecular graphics. Acta Crystallogr. D60: 2126-2132.
    • (2004) Acta Crystallogr , vol.D60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 14
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, R.A. and Huber, R. 1991. Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr. A47: 392-400.
    • (1991) Acta Crystallogr , vol.A47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 16
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman, D. and Argos, P. 1995. Knowledge-based protein secondary structure assignment. Proteins 23: 566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 17
    • 0029743311 scopus 로고    scopus 로고
    • Identification of residues of spinach thioredoxin f that influence interactions with target enzymes
    • Geck, M.K., Larimer, F.K., and Hartman, F.C. 1996. Identification of residues of spinach thioredoxin f that influence interactions with target enzymes. J. Biol. Chem. 271: 24736-24740.
    • (1996) J. Biol. Chem , vol.271 , pp. 24736-24740
    • Geck, M.K.1    Larimer, F.K.2    Hartman, F.C.3
  • 19
    • 0029586759 scopus 로고
    • Protein-protein interaction at crystal contacts
    • Janin, J. and Rodier, F. 1995. Protein-protein interaction at crystal contacts. Proteins 23: 580-587.
    • (1995) Proteins , vol.23 , pp. 580-587
    • Janin, J.1    Rodier, F.2
  • 20
  • 21
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones, S. and Thornton, J.M. 1996. Principles of protein-protein interactions. Proc. Natl. Acad. Sci. 93: 13-20.
    • (1996) Proc. Natl. Acad. Sci , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 22
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47: 110-119.
    • (1991) Acta Crystallogr , vol.A47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 23
    • 0019163962 scopus 로고
    • Differential reactivity of the functional sulfhydryl groups of cysteine-32 and cysteine-35 present in the reduced form of thioredoxin from Escherichia coli
    • Kallis, G.B. and Holmgren, A. 1980. Differential reactivity of the functional sulfhydryl groups of cysteine-32 and cysteine-35 present in the reduced form of thioredoxin from Escherichia coli. J. Biol. Chem. 255: 10261-10265.
    • (1980) J. Biol. Chem , vol.255 , pp. 10261-10265
    • Kallis, G.B.1    Holmgren, A.2
  • 24
    • 0025319619 scopus 로고
    • Crystal structure of thioredoxin from Escherichia coli at 1.68 Å resolution
    • Katti, S.K., LeMaster, D.M., and Eklund, H. 1990. Crystal structure of thioredoxin from Escherichia coli at 1.68 Å resolution. J. Mol. Biol. 212: 167-184.
    • (1990) J. Mol. Biol , vol.212 , pp. 167-184
    • Katti, S.K.1    LeMaster, D.M.2    Eklund, H.3
  • 25
    • 1642547085 scopus 로고    scopus 로고
    • The Arabidopsis cytosolic thioredoxin h5 gene induction by oxidative stress and its W-box-mediated response to pathogen elicitor
    • Laloi, C., Mestres-Ortega, D., Marco, Y., Meyer, Y., and Reichheld, J.P. 2004. The Arabidopsis cytosolic thioredoxin h5 gene induction by oxidative stress and its W-box-mediated response to pathogen elicitor. Plant Physiol. 134: 1006-1016.
    • (2004) Plant Physiol , vol.134 , pp. 1006-1016
    • Laloi, C.1    Mestres-Ortega, D.2    Marco, Y.3    Meyer, Y.4    Reichheld, J.P.5
  • 26
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., McArthur, M.W., Moss, D.S., and Thornton, J.M. 1993. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26: 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    McArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 28
    • 0037636244 scopus 로고    scopus 로고
    • Identification, cloning and characterization of two thioredoxin h isoforms, HvTrxh1 and HvTrxh2, from the barley seed proteome
    • Maeda, K., Finnie, C., Østergaard, O., and Svensson, B. 2003. Identification, cloning and characterization of two thioredoxin h isoforms, HvTrxh1 and HvTrxh2, from the barley seed proteome. Eur. J. Biochem. 270: 2633-2643.
    • (2003) Eur. J. Biochem , vol.270 , pp. 2633-2643
    • Maeda, K.1    Finnie, C.2    Østergaard, O.3    Svensson, B.4
  • 29
    • 1642409412 scopus 로고    scopus 로고
    • Cy5 maleimide labelling for sensitive detection of free thiols in native protein extracts: Identification of seed proteins targeted by barley thioredoxin h isoforms
    • Maeda, K., Finnie, C., and Svensson, B. 2004. Cy5 maleimide labelling for sensitive detection of free thiols in native protein extracts: Identification of seed proteins targeted by barley thioredoxin h isoforms. Biochem. J. 378: 497-507.
    • (2004) Biochem. J , vol.378 , pp. 497-507
    • Maeda, K.1    Finnie, C.2    Svensson, B.3
  • 30
    • 17844411493 scopus 로고    scopus 로고
    • Identification of thioredoxin h-reducible disulphides in proteomes by differential labelling of cysteines: Insight into recognition and regulation of proteins in barley seeds by thioredoxin h
    • Maeda, K., Finnie, C., and Svensson, B. 2005. Identification of thioredoxin h-reducible disulphides in proteomes by differential labelling of cysteines: Insight into recognition and regulation of proteins in barley seeds by thioredoxin h. Proteomics 5: 1634-1644.
    • (2005) Proteomics , vol.5 , pp. 1634-1644
    • Maeda, K.1    Finnie, C.2    Svensson, B.3
  • 31
    • 33846393586 scopus 로고    scopus 로고
    • Structural basis for target protein recognition by the protein disulfide reductase thioredoxin
    • Maeda, K., Hägglund, P., Finnie, C., Svensson, B., and Henriksen, A. 2006. Structural basis for target protein recognition by the protein disulfide reductase thioredoxin. Structure 14: 1701-1710.
    • (2006) Structure , vol.14 , pp. 1701-1710
    • Maeda, K.1    Hägglund, P.2    Finnie, C.3    Svensson, B.4    Henriksen, A.5
  • 32
    • 0035476417 scopus 로고    scopus 로고
    • Crystal structure of the wild-type and D30A mutant thioredoxin h of Chlamydomonas reinhardtii and implications for the catalytic mechanism
    • Menchise, V., Corbier, C., Didierjean, C., Saviano, M., Benedetti, E., Jacquot, J.P., and Aubry, A. 2001. Crystal structure of the wild-type and D30A mutant thioredoxin h of Chlamydomonas reinhardtii and implications for the catalytic mechanism. Biochem. J. 359: 65-75.
    • (2001) Biochem. J , vol.359 , pp. 65-75
    • Menchise, V.1    Corbier, C.2    Didierjean, C.3    Saviano, M.4    Benedetti, E.5    Jacquot, J.P.6    Aubry, A.7
  • 33
    • 0036119804 scopus 로고    scopus 로고
    • Classification of plant thioredoxins by sequence similarity and intron position
    • Meyer, Y., Vignols, F., and Reichheld, J.P. 2002. Classification of plant thioredoxins by sequence similarity and intron position. Methods Enzymol. 347: 394-402.
    • (2002) Methods Enzymol , vol.347 , pp. 394-402
    • Meyer, Y.1    Vignols, F.2    Reichheld, J.P.3
  • 34
    • 0031026291 scopus 로고    scopus 로고
    • NMR solution structure of an oxidised thioredoxin h from the eukaryotic green alga Chlamydomonas reinhardtii
    • Mittard, V., Blackledge, M.J., Stein, M., Jacquot, J.P., Marion, D., and Lancelin, J.M. 1997. NMR solution structure of an oxidised thioredoxin h from the eukaryotic green alga Chlamydomonas reinhardtii. Eur. J. Biochem. 243: 374-383.
    • (1997) Eur. J. Biochem , vol.243 , pp. 374-383
    • Mittard, V.1    Blackledge, M.J.2    Stein, M.3    Jacquot, J.P.4    Marion, D.5    Lancelin, J.M.6
  • 35
    • 0032568925 scopus 로고    scopus 로고
    • Role of electrostatic interactions on the affinity of thioredoxin for target proteins. Recognition of chloroplast fructose-1,6-bisphosphatase by mutant Escherichia coli thioredoxins
    • Mora-García, S., Rodríguez-Suárez, R., and Wolosiuk, R.A. 1998. Role of electrostatic interactions on the affinity of thioredoxin for target proteins. Recognition of chloroplast fructose-1,6-bisphosphatase by mutant Escherichia coli thioredoxins. J. Biol. Chem. 273: 16273-16280.
    • (1998) J. Biol. Chem , vol.273 , pp. 16273-16280
    • Mora-García, S.1    Rodríguez-Suárez, R.2    Wolosiuk, R.A.3
  • 36
    • 0032539799 scopus 로고    scopus 로고
    • In vivo functional discrimination between plant thioredoxins by heterologous expression in the yeast Saccharomyces cerevisiae
    • Mouaheb, N., Thomas, D., Verdoucq, L., Monfort, P., and Meyer, Y. 1998. In vivo functional discrimination between plant thioredoxins by heterologous expression in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. 95: 3312-3317.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 3312-3317
    • Mouaheb, N.1    Thomas, D.2    Verdoucq, L.3    Monfort, P.4    Meyer, Y.5
  • 37
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov, G.N., Vagin, A.A., and Dodson, E.J. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D53: 240-255.
    • (1997) Acta Crystallogr , vol.D53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 39
    • 0029644240 scopus 로고
    • Solution structure of human thioredoxin in a mixed disulfide intermediate complex with its target peptide from the transcription factor NFκB
    • Qin, J., Clore, G.M., Kennedy, W.M., Huth, J.R., and Gronenborn, A.M. 1995. Solution structure of human thioredoxin in a mixed disulfide intermediate complex with its target peptide from the transcription factor NFκB. Structure 3: 289-297.
    • (1995) Structure , vol.3 , pp. 289-297
    • Qin, J.1    Clore, G.M.2    Kennedy, W.M.3    Huth, J.R.4    Gronenborn, A.M.5
  • 40
    • 0030585150 scopus 로고    scopus 로고
    • The solution structure of human thioredoxin complexed with its target from Ref-1 reveals peptide chain reversal
    • Qin, J., Clore, G.M., Kennedy, W.P., Kuszewski, J., and Gronenborn, A.M. 1996. The solution structure of human thioredoxin complexed with its target from Ref-1 reveals peptide chain reversal. Structure 4: 613-620.
    • (1996) Structure , vol.4 , pp. 613-620
    • Qin, J.1    Clore, G.M.2    Kennedy, W.P.3    Kuszewski, J.4    Gronenborn, A.M.5
  • 41
    • 0034654346 scopus 로고    scopus 로고
    • The "fingerprint" that X-rays can leave on structures
    • Ravelli, R.B. and McSweeney, S.M. 2000. The "fingerprint" that X-rays can leave on structures. Structure 8: 315-328.
    • (2000) Structure , vol.8 , pp. 315-328
    • Ravelli, R.B.1    McSweeney, S.M.2
  • 42
    • 0036619752 scopus 로고    scopus 로고
    • The multigenic family of thioredoxin h in Arabidopsis thaliana: Specific expression and stress response
    • Reichheld, J.P., Mestres-Ortega, D., Laloi, C., and Meyer, Y. 2002. The multigenic family of thioredoxin h in Arabidopsis thaliana: Specific expression and stress response. Plant Physiol. Biochem. 40: 685-690.
    • (2002) Plant Physiol. Biochem , vol.40 , pp. 685-690
    • Reichheld, J.P.1    Mestres-Ortega, D.2    Laloi, C.3    Meyer, Y.4
  • 44
    • 13844306891 scopus 로고    scopus 로고
    • Functional specialization of Chlamydomonas reinhardtii cytosolic thioredoxin h1 in the response to alkylation-induced DNA damage
    • Sarkar, N., Lemaire, S., Wu-Scharf, D., Issakidis-Bourguet, E., and Cerutti, H. 2005. Functional specialization of Chlamydomonas reinhardtii cytosolic thioredoxin h1 in the response to alkylation-induced DNA damage. Eukaryotic Cell 4: 262-273.
    • (2005) Eukaryotic Cell , vol.4 , pp. 262-273
    • Sarkar, N.1    Lemaire, S.2    Wu-Scharf, D.3    Issakidis-Bourguet, E.4    Cerutti, H.5
  • 45
    • 0028344541 scopus 로고
    • Distinct effects of thioredoxin and antioxidants on the activation of transcription factors NF-κB and AP-1
    • Schenk, H., Klein, M., Erdbrügger, W., Dröge, W., and Schulze-Osthoff, K. 1994. Distinct effects of thioredoxin and antioxidants on the activation of transcription factors NF-κB and AP-1. Proc. Natl. Acad. Sci. 91: 1672-1676.
    • (1994) Proc. Natl. Acad. Sci , vol.91 , pp. 1672-1676
    • Schenk, H.1    Klein, M.2    Erdbrügger, W.3    Dröge, W.4    Schulze-Osthoff, K.5
  • 46
    • 33646044990 scopus 로고    scopus 로고
    • High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study
    • Stirnimann, C.U., Rozhkova, A., Grauschopf, U., Bockmann, R.A., Glockshuber, R., Capitani, G., and Grutter, M.G. 2006. High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study. J. Mol. Biol. 358: 829-845.
    • (2006) J. Mol. Biol , vol.358 , pp. 829-845
    • Stirnimann, C.U.1    Rozhkova, A.2    Grauschopf, U.3    Bockmann, R.A.4    Glockshuber, R.5    Capitani, G.6    Grutter, M.G.7
  • 47
    • 3042613550 scopus 로고    scopus 로고
    • Likelihood-enhanced fast rotation functions
    • Storoni, L.C., McCoy, A.J., and Read, R.J. 2004. Likelihood-enhanced fast rotation functions. Acta Crystallogr. D60: 432-438.
    • (2004) Acta Crystallogr , vol.D60 , pp. 432-438
    • Storoni, L.C.1    McCoy, A.J.2    Read, R.J.3
  • 48
    • 33846368170 scopus 로고    scopus 로고
    • PsTRXh1 and PsTRXh2, are both pea (Pisum sativum) h-type thioredoxins with antagonistic behaviour in redox imbalances
    • Traverso, J.A., Vignols, F., Cazalis, R., Pulido, A., Sahrawy, M., Cejudo, F.J., Meyer, Y., and Chueca, A. 2007. PsTRXh1 and PsTRXh2, are both pea (Pisum sativum) h-type thioredoxins with antagonistic behaviour in redox imbalances. Plant Physiol. 143: 300-311.
    • (2007) Plant Physiol , vol.143 , pp. 300-311
    • Traverso, J.A.1    Vignols, F.2    Cazalis, R.3    Pulido, A.4    Sahrawy, M.5    Cejudo, F.J.6    Meyer, Y.7    Chueca, A.8
  • 49
    • 0033538442 scopus 로고    scopus 로고
    • In vivo characterization of a thioredoxin h target protein defines a new peroxiredoxin family
    • Verdoucq, L., Vignols, F., Jacquot, J.P., Chartier, Y., and Meyer, Y. 1999. In vivo characterization of a thioredoxin h target protein defines a new peroxiredoxin family. J. Biol. Chem. 274: 19714-19722.
    • (1999) J. Biol. Chem , vol.274 , pp. 19714-19722
    • Verdoucq, L.1    Vignols, F.2    Jacquot, J.P.3    Chartier, Y.4    Meyer, Y.5
  • 50
    • 11844280984 scopus 로고    scopus 로고
    • Comparative structural analysis of oxidized and reduced thioredoxin from Drosophila melanogaster
    • Wahl, M.C., Irmler, A., Hecker, B., Schirmer, R.H., and Becker, K. 2005. Comparative structural analysis of oxidized and reduced thioredoxin from Drosophila melanogaster. J. Mol. Biol. 345: 1119-1130.
    • (2005) J. Mol. Biol , vol.345 , pp. 1119-1130
    • Wahl, M.C.1    Irmler, A.2    Hecker, B.3    Schirmer, R.H.4    Becker, K.5
  • 51
    • 0030585429 scopus 로고    scopus 로고
    • Crystal structures of reduced, oxidized, and mutated human thioredoxins: Evidence for a regulatory homodimer
    • Weichsel, A., Gasdaska, J.R., Powis, G., and Montfort, W.R. 1996. Crystal structures of reduced, oxidized, and mutated human thioredoxins: Evidence for a regulatory homodimer. Structure 4: 735-751.
    • (1996) Structure , vol.4 , pp. 735-751
    • Weichsel, A.1    Gasdaska, J.R.2    Powis, G.3    Montfort, W.R.4
  • 52
    • 0035836648 scopus 로고    scopus 로고
    • A strategy for the identification of proteins targeted by thioredoxin
    • Yano, H., Wong, J.H., Lee, Y.M., Cho, M.J., and Buchanan, B.B. 2001. A strategy for the identification of proteins targeted by thioredoxin. Proc. Natl. Acad. Sci. 98: 4794-4799.
    • (2001) Proc. Natl. Acad. Sci , vol.98 , pp. 4794-4799
    • Yano, H.1    Wong, J.H.2    Lee, Y.M.3    Cho, M.J.4    Buchanan, B.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.