-
1
-
-
2442703943
-
Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi
-
Ast, J.C. and Dunlap, P.V. 2004. Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi. Archives of Microbiology 181: 352-361.
-
(2004)
Archives of Microbiology
, vol.181
, pp. 352-361
-
-
Ast, J.C.1
Dunlap, P.V.2
-
2
-
-
25144516786
-
Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group
-
Ast, J.C. and Dunlap, P.V. 2005. Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group. Environmental Microbiology 7: 1641-1654.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 1641-1654
-
-
Ast, J.C.1
Dunlap, P.V.2
-
3
-
-
0024692881
-
The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence
-
Baldwin, T.O., Devine, J.H., Heckel, R.C., Lin, J.W., and Shadel, G.S. 1989. The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence. Journal of Bioluminescence and Chemiluminescence 4: 326-341.
-
(1989)
Journal of Bioluminescence and Chemiluminescence
, vol.4
, pp. 326-341
-
-
Baldwin, T.O.1
Devine, J.H.2
Heckel, R.C.3
Lin, J.W.4
Shadel, G.S.5
-
4
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., and Bourne, P.E. 2000. The Protein Data Bank. Nucleic Acids Research 28: 235-242.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
0022349278
-
Regulation of cytoplasmic pH in bacteria
-
Booth, I.R. 1985. Regulation of cytoplasmic pH in bacteria. Microbiological Reviews 49: 359-378.
-
(1985)
Microbiological Reviews
, vol.49
, pp. 359-378
-
-
Booth, I.R.1
-
6
-
-
0030446912
-
Global climate and infectious disease: The cholera paradigm
-
Colwell, R.R. 1996. Global climate and infectious disease: the cholera paradigm. Science 274: 2025-2031.
-
(1996)
Science
, vol.274
, pp. 2025-2031
-
-
Colwell, R.R.1
-
7
-
-
0019428713
-
Occurrence of Vibrio cholerae serotype O1 in Maryland and Louisiana estuaries
-
Colwell, R.R., Seidler, R.J., Kaper, J., Joseph, S.W., Garges, S., Lockman, H., Maneval, D., Bradford, H., Roberts, N., Remmers, E., Huq, I., and Huq, A. 1981. Occurrence of Vibrio cholerae serotype O1 in Maryland and Louisiana estuaries. Applied and Environmental Microbiology 41: 555-558.
-
(1981)
Applied and Environmental Microbiology
, vol.41
, pp. 555-558
-
-
Colwell, R.R.1
Seidler, R.J.2
Kaper, J.3
Joseph, S.W.4
Garges, S.5
Lockman, H.6
Maneval, D.7
Bradford, H.8
Roberts, N.9
Remmers, E.10
Huq, I.11
Huq, A.12
-
8
-
-
0033028201
-
Parallel evolution of drug resistance in HIV: Failure of nonsynonymous/ synonymous substitution rate ratio to detect selection
-
Crandall, K.A., Kelsey, C.R., Imamichi, H., and Salzman, N.P. 1999. Parallel evolution of drug resistance in HIV: failure of nonsynonymous/ synonymous substitution rate ratio to detect selection. Molecular Biology and Evolution 16: 372-382.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 372-382
-
-
Crandall, K.A.1
Kelsey, C.R.2
Imamichi, H.3
Salzman, N.P.4
-
9
-
-
1542682579
-
Stimulation of DNA repair as an evolutionary drive for bacterial luminescence
-
Czyz, A., Plata, K., and Wegrzyn, G. 2003. Stimulation of DNA repair as an evolutionary drive for bacterial luminescence. Luminescence 18: 140-144.
-
(2003)
Luminescence
, vol.18
, pp. 140-144
-
-
Czyz, A.1
Plata, K.2
Wegrzyn, G.3
-
10
-
-
0033954063
-
Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair
-
Czyz, A., Plata, K., and Wegrzyn, G. 2000. Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair. Microbiology 146: 283-288.
-
(2000)
Microbiology
, vol.146
, pp. 283-288
-
-
Czyz, A.1
Plata, K.2
Wegrzyn, G.3
-
11
-
-
0032603314
-
Problems of adverse pH and bacterial strategies to combat it
-
Chadwick, D.J. and Cardew, G, eds. Wiley, Chichester, pp
-
Dilworth, M.J. and Glenn, A.R. 1999. Problems of adverse pH and bacterial strategies to combat it. In: Bacterial Responses to pH. Chadwick, D.J. and Cardew, G., eds. Wiley, Chichester, pp. 4-14.
-
(1999)
Bacterial Responses to pH
, pp. 4-14
-
-
Dilworth, M.J.1
Glenn, A.R.2
-
12
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
0031831078
-
Incidence of non-O1 Vibrio cholerae and Aeromonas spp. in fresh water in Araraquara, Brazil
-
Falcao, D.P., Lustri, W.R., and Bauab, T.M. 1998. Incidence of non-O1 Vibrio cholerae and Aeromonas spp. in fresh water in Araraquara, Brazil. Current Microbiology 37: 28-31.
-
(1998)
Current Microbiology
, vol.37
, pp. 28-31
-
-
Falcao, D.P.1
Lustri, W.R.2
Bauab, T.M.3
-
14
-
-
1942479207
-
Comparative studies of inorganic substances in the blood of fishes from the Scagerac Sea
-
Fange, R., Lidman, U., and Larsson, A. 1976. Comparative studies of inorganic substances in the blood of fishes from the Scagerac Sea. Journal of Fish Biology 8: 441-448.
-
(1976)
Journal of Fish Biology
, vol.8
, pp. 441-448
-
-
Fange, R.1
Lidman, U.2
Larsson, A.3
-
15
-
-
0014183122
-
Nonidentical subunits of bacterial luciferase: Their isolation and recombination to form active enzyme
-
Friedland, J. and Hastings, J.W. 1967. Nonidentical subunits of bacterial luciferase: Their isolation and recombination to form active enzyme. Proceedings of the National Academy of Sciences of the USA 58: 2336-2342.
-
(1967)
Proceedings of the National Academy of Sciences of the USA
, vol.58
, pp. 2336-2342
-
-
Friedland, J.1
Hastings, J.W.2
-
16
-
-
0022259081
-
Incidence of Vibrio cholerae and related vibrios in a coastal lagoon and seawater influenced by lake discharges along an annual cycle
-
Garay, E., Arnau, A., and Amaro, C. 1985. Incidence of Vibrio cholerae and related vibrios in a coastal lagoon and seawater influenced by lake discharges along an annual cycle. Applied and Environmental Microbiology 50: 426-430.
-
(1985)
Applied and Environmental Microbiology
, vol.50
, pp. 426-430
-
-
Garay, E.1
Arnau, A.2
Amaro, C.3
-
17
-
-
0344211872
-
Photorhabdus species: Bioluminescent bacteria as emerging human pathogens?
-
Gerrard, J.G., McNevin, S., Alfredson, D., Forgan-Smith, R., and Fraser, N. 2003. Photorhabdus species: bioluminescent bacteria as emerging human pathogens? Emerging Infectious Diseases 9: 251-254.
-
(2003)
Emerging Infectious Diseases
, vol.9
, pp. 251-254
-
-
Gerrard, J.G.1
McNevin, S.2
Alfredson, D.3
Forgan-Smith, R.4
Fraser, N.5
-
18
-
-
0018692402
-
The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme
-
Gould, S.J. and Lewontin, R.C. 1979. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proceedings of the Royal Society of London B 205: 581-598.
-
(1979)
Proceedings of the Royal Society of London B
, vol.205
, pp. 581-598
-
-
Gould, S.J.1
Lewontin, R.C.2
-
19
-
-
44349117416
-
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
-
-
-
-
21
-
-
0037340032
-
A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation
-
Joyce, S.A. and Clarke, D.J. 2003. A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation. Molecular Microbiology 47: 1445-1457.
-
(2003)
Molecular Microbiology
, vol.47
, pp. 1445-1457
-
-
Joyce, S.A.1
Clarke, D.J.2
-
22
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabasch, W. and Sander, C. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabasch, W.1
Sander, C.2
-
23
-
-
34248662454
-
Lateral transfer of the lux gene cluster
-
Kasai, S., Okada, K., Hoshino, A., Iida, T., and Takeshi, H. 2007. Lateral transfer of the lux gene cluster. Journal of Biochemistry 141: 231-237.
-
(2007)
Journal of Biochemistry
, vol.141
, pp. 231-237
-
-
Kasai, S.1
Okada, K.2
Hoshino, A.3
Iida, T.4
Takeshi, H.5
-
24
-
-
34347376906
-
The relationships between the isoelectric point and: Length of proteins, taxonomy and ecology of organisms
-
Kiraga, J., Mackiewicz, P., Mackiewicz, D., Kowalczuk, M., Biecek, P., Polak, N., Smolarczyk, K., Dudek, M.R., and Cebrat, S. 2007. The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms. BMC Genomics 8: 163.
-
(2007)
BMC Genomics
, vol.8
, pp. 163
-
-
Kiraga, J.1
Mackiewicz, P.2
Mackiewicz, D.3
Kowalczuk, M.4
Biecek, P.5
Polak, N.6
Smolarczyk, K.7
Dudek, M.R.8
Cebrat, S.9
-
25
-
-
0030949199
-
Phase II variants of Photorhabdus luminescens are induced by growth in low-osmolarity medium
-
Krasomil-Osterfeld, K.C. 1997. Phase II variants of Photorhabdus luminescens are induced by growth in low-osmolarity medium. Symbiosis 22: 155-165.
-
(1997)
Symbiosis
, vol.22
, pp. 155-165
-
-
Krasomil-Osterfeld, K.C.1
-
26
-
-
4143098437
-
Crystalline bacterial luciferase from Photobacterium fischeri
-
Kuwabara, S., Cormier, M.J., Dure, L.S., Kreiss, L.S., and Pfuderer, P. 1965. Crystalline bacterial luciferase from Photobacterium fischeri. Proceedings of the National Academy of Sciences of the USA 53: 822-828.
-
(1965)
Proceedings of the National Academy of Sciences of the USA
, vol.53
, pp. 822-828
-
-
Kuwabara, S.1
Cormier, M.J.2
Dure, L.S.3
Kreiss, L.S.4
Pfuderer, P.5
-
27
-
-
25444437207
-
Active site hydrophobicity is critical to the bioluminescence activity of Vibrio harveyi luciferase
-
Li, C.H. and Tu, S.C. 2005. Active site hydrophobicity is critical to the bioluminescence activity of Vibrio harveyi luciferase. Biochemistry 44: 12970-12977.
-
(2005)
Biochemistry
, vol.44
, pp. 12970-12977
-
-
Li, C.H.1
Tu, S.C.2
-
28
-
-
24044451239
-
Implication of a critical residue (GLU175) in structure and function of bacterial luciferase
-
Madvar, A.R., Hosseinkhani, S., Khajeh, K., Ranjbar, B., and Asoodeh, A. 2005. Implication of a critical residue (GLU175) in structure and function of bacterial luciferase. FEBS Letters 579: 4707-4706.
-
(2005)
FEBS Letters
, vol.579
, pp. 4707-4706
-
-
Madvar, A.R.1
Hosseinkhani, S.2
Khajeh, K.3
Ranjbar, B.4
Asoodeh, A.5
-
30
-
-
0002090036
-
Origin and evolution of bioluminescence
-
Kasha, M, and Pullman, B, eds. Academic Press, New York, pp
-
McElroy, W.D. and Seliger, H.H. 1962. Origin and evolution of bioluminescence. In: Horizons in Biochemistry. Kasha, M., and Pullman, B., eds. Academic Press, New York, pp. 91-101.
-
(1962)
Horizons in Biochemistry
, pp. 91-101
-
-
McElroy, W.D.1
Seliger, H.H.2
-
31
-
-
0032600275
-
Autoinduction of light emission in different species of bioluminescent bacteria
-
Meighen, E.A. 1999. Autoinduction of light emission in different species of bioluminescent bacteria. Luminescence 14: 3-9.
-
(1999)
Luminescence
, vol.14
, pp. 3-9
-
-
Meighen, E.A.1
-
32
-
-
0028566948
-
Genetics of bacterial bioluminescence. I
-
Meighen, E.A. 1994. Genetics of bacterial bioluminescence. I 28: 117-139.
-
(1994)
, vol.28
, pp. 117-139
-
-
Meighen, E.A.1
-
33
-
-
0026733628
-
Multiple repetitive elements and organization of the lux operons of luminescent terrestrial bacteria
-
Meighen, E.A. and Szittner, R.B. 1992. Multiple repetitive elements and organization of the lux operons of luminescent terrestrial bacteria. Journal of Bacteriology 174: 5371-5381.
-
(1992)
Journal of Bacteriology
, vol.174
, pp. 5371-5381
-
-
Meighen, E.A.1
Szittner, R.B.2
-
34
-
-
0033534148
-
Folding, stability, and physical properties of the α subunit of bacterial luciferase
-
Noland, B.W., Dangott, L.J., and Baldwin, T.O. 1999. Folding, stability, and physical properties of the α subunit of bacterial luciferase. Biochemistry 38: 16136-16145.
-
(1999)
Biochemistry
, vol.38
, pp. 16136-16145
-
-
Noland, B.W.1
Dangott, L.J.2
Baldwin, T.O.3
-
35
-
-
0026566841
-
Evolutionary origins of bacterial bioluminescence
-
O'Kane, D.J. and Prasher, D.C. 1992. Evolutionary origins of bacterial bioluminescence. Molecular Microbiology 6: 443-449.
-
(1992)
Molecular Microbiology
, vol.6
, pp. 443-449
-
-
O'Kane, D.J.1
Prasher, D.C.2
-
36
-
-
0025323708
-
The distribution of physical, chemical, and conformational properties in signal and nascent peptides
-
Prabhakaran, M. 1990. The distribution of physical, chemical, and conformational properties in signal and nascent peptides. Biochemical Journal 269: 691-696.
-
(1990)
Biochemical Journal
, vol.269
, pp. 691-696
-
-
Prabhakaran, M.1
-
37
-
-
0018635651
-
The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins
-
Prabhakaran, M. and Ponnuswamy, P.K. 1979. The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins. Journal of Theoretical Biology 80: 485-504.
-
(1979)
Journal of Theoretical Biology
, vol.80
, pp. 485-504
-
-
Prabhakaran, M.1
Ponnuswamy, P.K.2
-
38
-
-
17644391346
-
A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains
-
Purdy, A., Rohwer, F., Edwards, R., Azam, F., and Bartlett, D.H. 2005. A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. Journal of Bacteriology 187: 2992-3001.
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 2992-3001
-
-
Purdy, A.1
Rohwer, F.2
Edwards, R.3
Azam, F.4
Bartlett, D.H.5
-
39
-
-
0001194454
-
Studies on the chemical composition of muscle tissue. III. The mantle muscle of cephalopod mollusks
-
Robertson, J.D. 1965. Studies on the chemical composition of muscle tissue. III. The mantle muscle of cephalopod mollusks. Journal of Experimental Biology 42: 153-175.
-
(1965)
Journal of Experimental Biology
, vol.42
, pp. 153-175
-
-
Robertson, J.D.1
-
40
-
-
0031934001
-
The Vibrio fischeri-Euprymna scolopes light organ association: Current ecological paradigms
-
Ruby, E.G. and Lee, K. 1998. The Vibrio fischeri-Euprymna scolopes light organ association: current ecological paradigms. Applied and Environmental Microbiology 64: 805-812.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 805-812
-
-
Ruby, E.G.1
Lee, K.2
-
41
-
-
84986815955
-
Seasonal changes in the species composition of luminous bacteria in nearshore seawater
-
Ruby, E.G. and Nealson, K.H. 1978. Seasonal changes in the species composition of luminous bacteria in nearshore seawater. Limnology and Oceanography 23: 530-533.
-
(1978)
Limnology and Oceanography
, vol.23
, pp. 530-533
-
-
Ruby, E.G.1
Nealson, K.H.2
-
42
-
-
20044369348
-
Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners
-
Ruby, E.G., Urbanowski, M., Campbell, J., Dunn, A., Faini, M., Gunsalus, R., Lostroh, P., Lupp, C., McCann, J., Millikan, D., Schaefer, A., Stabb, E., Stevens, A., Visick, K., Whistler, C., and Greenberg, E.P. 2005. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proceedings of the National Academy of Sciences of the USA 102: 3004-3009.
-
(2005)
Proceedings of the National Academy of Sciences of the USA
, vol.102
, pp. 3004-3009
-
-
Ruby, E.G.1
Urbanowski, M.2
Campbell, J.3
Dunn, A.4
Faini, M.5
Gunsalus, R.6
Lostroh, P.7
Lupp, C.8
McCann, J.9
Millikan, D.10
Schaefer, A.11
Stabb, E.12
Stevens, A.13
Visick, K.14
Whistler, C.15
Greenberg, E.P.16
-
43
-
-
33746502514
-
Shedding light on the bioluminescence "paradox
-
Stabb, E.V. 2005. Shedding light on the bioluminescence "paradox". ASM News 71: 223-229.
-
(2005)
ASM News
, vol.71
, pp. 223-229
-
-
Stabb, E.V.1
-
44
-
-
1942539256
-
Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri Strain ES114
-
Stabb, E.V., Butler, M.S., and Adin, D.M. 2004. Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri Strain ES114. Journal of Bacteriology 186: 2906-2908.
-
(2004)
Journal of Bacteriology
, vol.186
, pp. 2906-2908
-
-
Stabb, E.V.1
Butler, M.S.2
Adin, D.M.3
-
45
-
-
44349139559
-
-
Swofford, D.L, 2000. PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4. Sinauer Associates, Sunderland, Massachusetts
-
Swofford, D.L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
-
-
-
-
46
-
-
0141446088
-
Experimental evidence for the physiological role of bacterial luciferase in the protection of cells against oxidative stress
-
Szpilewska, H., Czyz, A., and Wegrzyn, G. 2003. Experimental evidence for the physiological role of bacterial luciferase in the protection of cells against oxidative stress. Current Microbiology 47: 379-382.
-
(2003)
Current Microbiology
, vol.47
, pp. 379-382
-
-
Szpilewska, H.1
Czyz, A.2
Wegrzyn, G.3
-
47
-
-
17744373692
-
Characterization of the long-wavelength opsin from mecoptera and siphonaptera: Does a flea see?
-
Taylor, S.D., Dittmar de la Cruz, K., Porter, M.L., and Whiting, M.F. 2005. Characterization of the long-wavelength opsin from mecoptera and siphonaptera: does a flea see? Molecular Biology and Evolution 22: 1165-1174.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1165-1174
-
-
Taylor, S.D.1
Dittmar de la Cruz, K.2
Porter, M.L.3
Whiting, M.F.4
-
48
-
-
0035048566
-
The evolution of bioluminescent oxygen consumption as an ancient oxygen detoxification mechanism
-
Timmins, G.S., Jackson, S.K., and Swartz, H.M. 2001. The evolution of bioluminescent oxygen consumption as an ancient oxygen detoxification mechanism. Journal of Molecular Evolution 52: 321-332.
-
(2001)
Journal of Molecular Evolution
, vol.52
, pp. 321-332
-
-
Timmins, G.S.1
Jackson, S.K.2
Swartz, H.M.3
-
49
-
-
0344564130
-
Control of luminescence decay and flavin binding by the luxA carboxyl-terminal regions in chimeric bacterial luciferases
-
Valkova, N., Szittner, R., and Meighen, E.A. 1999. Control of luminescence decay and flavin binding by the luxA carboxyl-terminal regions in chimeric bacterial luciferases. Biochemistry 38: 13820-13828.
-
(1999)
Biochemistry
, vol.38
, pp. 13820-13828
-
-
Valkova, N.1
Szittner, R.2
Meighen, E.A.3
-
50
-
-
0037461034
-
TreeSAAP: Selection on amino acid properties using phylogenetic trees
-
Woolley, S., Johnson, J., Smith, M.J., Crandall, K.A., and McClellan, D.A. 2003. TreeSAAP: selection on amino acid properties using phylogenetic trees. Bioinformatics 19: 671-672.
-
(2003)
Bioinformatics
, vol.19
, pp. 671-672
-
-
Woolley, S.1
Johnson, J.2
Smith, M.J.3
Crandall, K.A.4
McClellan, D.A.5
|