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Volumn 46, Issue 2, 2008, Pages 101-108

Natural selection on the luxA gene of bioluminescent bacteria

Author keywords

Bacteria; Bioluminescence; Destabilizing selection; Evolution; luxA; Natural selection; Photobacterium; Photorhabdus; Shewanella; TreeSAAP; Vibrio

Indexed keywords

AMINO ACID; BACTERIUM; BIOLUMINESCENCE; ENDOSYMBIONT; NATURAL SELECTION; OXYGEN CONSUMPTION; PHYSICOCHEMICAL PROPERTY; PREY CAPTURE;

EID: 44349181575     PISSN: 03345114     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (50)
  • 1
    • 2442703943 scopus 로고    scopus 로고
    • Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi
    • Ast, J.C. and Dunlap, P.V. 2004. Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi. Archives of Microbiology 181: 352-361.
    • (2004) Archives of Microbiology , vol.181 , pp. 352-361
    • Ast, J.C.1    Dunlap, P.V.2
  • 2
    • 25144516786 scopus 로고    scopus 로고
    • Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group
    • Ast, J.C. and Dunlap, P.V. 2005. Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group. Environmental Microbiology 7: 1641-1654.
    • (2005) Environmental Microbiology , vol.7 , pp. 1641-1654
    • Ast, J.C.1    Dunlap, P.V.2
  • 3
    • 0024692881 scopus 로고
    • The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence
    • Baldwin, T.O., Devine, J.H., Heckel, R.C., Lin, J.W., and Shadel, G.S. 1989. The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence. Journal of Bioluminescence and Chemiluminescence 4: 326-341.
    • (1989) Journal of Bioluminescence and Chemiluminescence , vol.4 , pp. 326-341
    • Baldwin, T.O.1    Devine, J.H.2    Heckel, R.C.3    Lin, J.W.4    Shadel, G.S.5
  • 5
    • 0022349278 scopus 로고
    • Regulation of cytoplasmic pH in bacteria
    • Booth, I.R. 1985. Regulation of cytoplasmic pH in bacteria. Microbiological Reviews 49: 359-378.
    • (1985) Microbiological Reviews , vol.49 , pp. 359-378
    • Booth, I.R.1
  • 6
    • 0030446912 scopus 로고    scopus 로고
    • Global climate and infectious disease: The cholera paradigm
    • Colwell, R.R. 1996. Global climate and infectious disease: the cholera paradigm. Science 274: 2025-2031.
    • (1996) Science , vol.274 , pp. 2025-2031
    • Colwell, R.R.1
  • 8
    • 0033028201 scopus 로고    scopus 로고
    • Parallel evolution of drug resistance in HIV: Failure of nonsynonymous/ synonymous substitution rate ratio to detect selection
    • Crandall, K.A., Kelsey, C.R., Imamichi, H., and Salzman, N.P. 1999. Parallel evolution of drug resistance in HIV: failure of nonsynonymous/ synonymous substitution rate ratio to detect selection. Molecular Biology and Evolution 16: 372-382.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 372-382
    • Crandall, K.A.1    Kelsey, C.R.2    Imamichi, H.3    Salzman, N.P.4
  • 9
    • 1542682579 scopus 로고    scopus 로고
    • Stimulation of DNA repair as an evolutionary drive for bacterial luminescence
    • Czyz, A., Plata, K., and Wegrzyn, G. 2003. Stimulation of DNA repair as an evolutionary drive for bacterial luminescence. Luminescence 18: 140-144.
    • (2003) Luminescence , vol.18 , pp. 140-144
    • Czyz, A.1    Plata, K.2    Wegrzyn, G.3
  • 10
    • 0033954063 scopus 로고    scopus 로고
    • Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair
    • Czyz, A., Plata, K., and Wegrzyn, G. 2000. Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair. Microbiology 146: 283-288.
    • (2000) Microbiology , vol.146 , pp. 283-288
    • Czyz, A.1    Plata, K.2    Wegrzyn, G.3
  • 11
    • 0032603314 scopus 로고    scopus 로고
    • Problems of adverse pH and bacterial strategies to combat it
    • Chadwick, D.J. and Cardew, G, eds. Wiley, Chichester, pp
    • Dilworth, M.J. and Glenn, A.R. 1999. Problems of adverse pH and bacterial strategies to combat it. In: Bacterial Responses to pH. Chadwick, D.J. and Cardew, G., eds. Wiley, Chichester, pp. 4-14.
    • (1999) Bacterial Responses to pH , pp. 4-14
    • Dilworth, M.J.1    Glenn, A.R.2
  • 12
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 13
    • 0031831078 scopus 로고    scopus 로고
    • Incidence of non-O1 Vibrio cholerae and Aeromonas spp. in fresh water in Araraquara, Brazil
    • Falcao, D.P., Lustri, W.R., and Bauab, T.M. 1998. Incidence of non-O1 Vibrio cholerae and Aeromonas spp. in fresh water in Araraquara, Brazil. Current Microbiology 37: 28-31.
    • (1998) Current Microbiology , vol.37 , pp. 28-31
    • Falcao, D.P.1    Lustri, W.R.2    Bauab, T.M.3
  • 14
    • 1942479207 scopus 로고
    • Comparative studies of inorganic substances in the blood of fishes from the Scagerac Sea
    • Fange, R., Lidman, U., and Larsson, A. 1976. Comparative studies of inorganic substances in the blood of fishes from the Scagerac Sea. Journal of Fish Biology 8: 441-448.
    • (1976) Journal of Fish Biology , vol.8 , pp. 441-448
    • Fange, R.1    Lidman, U.2    Larsson, A.3
  • 15
    • 0014183122 scopus 로고
    • Nonidentical subunits of bacterial luciferase: Their isolation and recombination to form active enzyme
    • Friedland, J. and Hastings, J.W. 1967. Nonidentical subunits of bacterial luciferase: Their isolation and recombination to form active enzyme. Proceedings of the National Academy of Sciences of the USA 58: 2336-2342.
    • (1967) Proceedings of the National Academy of Sciences of the USA , vol.58 , pp. 2336-2342
    • Friedland, J.1    Hastings, J.W.2
  • 16
    • 0022259081 scopus 로고
    • Incidence of Vibrio cholerae and related vibrios in a coastal lagoon and seawater influenced by lake discharges along an annual cycle
    • Garay, E., Arnau, A., and Amaro, C. 1985. Incidence of Vibrio cholerae and related vibrios in a coastal lagoon and seawater influenced by lake discharges along an annual cycle. Applied and Environmental Microbiology 50: 426-430.
    • (1985) Applied and Environmental Microbiology , vol.50 , pp. 426-430
    • Garay, E.1    Arnau, A.2    Amaro, C.3
  • 18
    • 0018692402 scopus 로고
    • The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme
    • Gould, S.J. and Lewontin, R.C. 1979. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proceedings of the Royal Society of London B 205: 581-598.
    • (1979) Proceedings of the Royal Society of London B , vol.205 , pp. 581-598
    • Gould, S.J.1    Lewontin, R.C.2
  • 19
    • 44349117416 scopus 로고    scopus 로고
    • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
    • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
  • 21
    • 0037340032 scopus 로고    scopus 로고
    • A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation
    • Joyce, S.A. and Clarke, D.J. 2003. A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation. Molecular Microbiology 47: 1445-1457.
    • (2003) Molecular Microbiology , vol.47 , pp. 1445-1457
    • Joyce, S.A.1    Clarke, D.J.2
  • 22
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabasch, W. and Sander, C. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabasch, W.1    Sander, C.2
  • 25
    • 0030949199 scopus 로고    scopus 로고
    • Phase II variants of Photorhabdus luminescens are induced by growth in low-osmolarity medium
    • Krasomil-Osterfeld, K.C. 1997. Phase II variants of Photorhabdus luminescens are induced by growth in low-osmolarity medium. Symbiosis 22: 155-165.
    • (1997) Symbiosis , vol.22 , pp. 155-165
    • Krasomil-Osterfeld, K.C.1
  • 27
    • 25444437207 scopus 로고    scopus 로고
    • Active site hydrophobicity is critical to the bioluminescence activity of Vibrio harveyi luciferase
    • Li, C.H. and Tu, S.C. 2005. Active site hydrophobicity is critical to the bioluminescence activity of Vibrio harveyi luciferase. Biochemistry 44: 12970-12977.
    • (2005) Biochemistry , vol.44 , pp. 12970-12977
    • Li, C.H.1    Tu, S.C.2
  • 28
    • 24044451239 scopus 로고    scopus 로고
    • Implication of a critical residue (GLU175) in structure and function of bacterial luciferase
    • Madvar, A.R., Hosseinkhani, S., Khajeh, K., Ranjbar, B., and Asoodeh, A. 2005. Implication of a critical residue (GLU175) in structure and function of bacterial luciferase. FEBS Letters 579: 4707-4706.
    • (2005) FEBS Letters , vol.579 , pp. 4707-4706
    • Madvar, A.R.1    Hosseinkhani, S.2    Khajeh, K.3    Ranjbar, B.4    Asoodeh, A.5
  • 30
    • 0002090036 scopus 로고
    • Origin and evolution of bioluminescence
    • Kasha, M, and Pullman, B, eds. Academic Press, New York, pp
    • McElroy, W.D. and Seliger, H.H. 1962. Origin and evolution of bioluminescence. In: Horizons in Biochemistry. Kasha, M., and Pullman, B., eds. Academic Press, New York, pp. 91-101.
    • (1962) Horizons in Biochemistry , pp. 91-101
    • McElroy, W.D.1    Seliger, H.H.2
  • 31
    • 0032600275 scopus 로고    scopus 로고
    • Autoinduction of light emission in different species of bioluminescent bacteria
    • Meighen, E.A. 1999. Autoinduction of light emission in different species of bioluminescent bacteria. Luminescence 14: 3-9.
    • (1999) Luminescence , vol.14 , pp. 3-9
    • Meighen, E.A.1
  • 32
    • 0028566948 scopus 로고
    • Genetics of bacterial bioluminescence. I
    • Meighen, E.A. 1994. Genetics of bacterial bioluminescence. I 28: 117-139.
    • (1994) , vol.28 , pp. 117-139
    • Meighen, E.A.1
  • 33
    • 0026733628 scopus 로고
    • Multiple repetitive elements and organization of the lux operons of luminescent terrestrial bacteria
    • Meighen, E.A. and Szittner, R.B. 1992. Multiple repetitive elements and organization of the lux operons of luminescent terrestrial bacteria. Journal of Bacteriology 174: 5371-5381.
    • (1992) Journal of Bacteriology , vol.174 , pp. 5371-5381
    • Meighen, E.A.1    Szittner, R.B.2
  • 34
    • 0033534148 scopus 로고    scopus 로고
    • Folding, stability, and physical properties of the α subunit of bacterial luciferase
    • Noland, B.W., Dangott, L.J., and Baldwin, T.O. 1999. Folding, stability, and physical properties of the α subunit of bacterial luciferase. Biochemistry 38: 16136-16145.
    • (1999) Biochemistry , vol.38 , pp. 16136-16145
    • Noland, B.W.1    Dangott, L.J.2    Baldwin, T.O.3
  • 35
    • 0026566841 scopus 로고
    • Evolutionary origins of bacterial bioluminescence
    • O'Kane, D.J. and Prasher, D.C. 1992. Evolutionary origins of bacterial bioluminescence. Molecular Microbiology 6: 443-449.
    • (1992) Molecular Microbiology , vol.6 , pp. 443-449
    • O'Kane, D.J.1    Prasher, D.C.2
  • 36
    • 0025323708 scopus 로고
    • The distribution of physical, chemical, and conformational properties in signal and nascent peptides
    • Prabhakaran, M. 1990. The distribution of physical, chemical, and conformational properties in signal and nascent peptides. Biochemical Journal 269: 691-696.
    • (1990) Biochemical Journal , vol.269 , pp. 691-696
    • Prabhakaran, M.1
  • 37
    • 0018635651 scopus 로고
    • The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins
    • Prabhakaran, M. and Ponnuswamy, P.K. 1979. The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins. Journal of Theoretical Biology 80: 485-504.
    • (1979) Journal of Theoretical Biology , vol.80 , pp. 485-504
    • Prabhakaran, M.1    Ponnuswamy, P.K.2
  • 38
    • 17644391346 scopus 로고    scopus 로고
    • A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains
    • Purdy, A., Rohwer, F., Edwards, R., Azam, F., and Bartlett, D.H. 2005. A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. Journal of Bacteriology 187: 2992-3001.
    • (2005) Journal of Bacteriology , vol.187 , pp. 2992-3001
    • Purdy, A.1    Rohwer, F.2    Edwards, R.3    Azam, F.4    Bartlett, D.H.5
  • 39
    • 0001194454 scopus 로고
    • Studies on the chemical composition of muscle tissue. III. The mantle muscle of cephalopod mollusks
    • Robertson, J.D. 1965. Studies on the chemical composition of muscle tissue. III. The mantle muscle of cephalopod mollusks. Journal of Experimental Biology 42: 153-175.
    • (1965) Journal of Experimental Biology , vol.42 , pp. 153-175
    • Robertson, J.D.1
  • 40
    • 0031934001 scopus 로고    scopus 로고
    • The Vibrio fischeri-Euprymna scolopes light organ association: Current ecological paradigms
    • Ruby, E.G. and Lee, K. 1998. The Vibrio fischeri-Euprymna scolopes light organ association: current ecological paradigms. Applied and Environmental Microbiology 64: 805-812.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 805-812
    • Ruby, E.G.1    Lee, K.2
  • 41
    • 84986815955 scopus 로고
    • Seasonal changes in the species composition of luminous bacteria in nearshore seawater
    • Ruby, E.G. and Nealson, K.H. 1978. Seasonal changes in the species composition of luminous bacteria in nearshore seawater. Limnology and Oceanography 23: 530-533.
    • (1978) Limnology and Oceanography , vol.23 , pp. 530-533
    • Ruby, E.G.1    Nealson, K.H.2
  • 43
    • 33746502514 scopus 로고    scopus 로고
    • Shedding light on the bioluminescence "paradox
    • Stabb, E.V. 2005. Shedding light on the bioluminescence "paradox". ASM News 71: 223-229.
    • (2005) ASM News , vol.71 , pp. 223-229
    • Stabb, E.V.1
  • 44
    • 1942539256 scopus 로고    scopus 로고
    • Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri Strain ES114
    • Stabb, E.V., Butler, M.S., and Adin, D.M. 2004. Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri Strain ES114. Journal of Bacteriology 186: 2906-2908.
    • (2004) Journal of Bacteriology , vol.186 , pp. 2906-2908
    • Stabb, E.V.1    Butler, M.S.2    Adin, D.M.3
  • 45
    • 44349139559 scopus 로고    scopus 로고
    • Swofford, D.L, 2000. PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4. Sinauer Associates, Sunderland, Massachusetts
    • Swofford, D.L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
  • 46
    • 0141446088 scopus 로고    scopus 로고
    • Experimental evidence for the physiological role of bacterial luciferase in the protection of cells against oxidative stress
    • Szpilewska, H., Czyz, A., and Wegrzyn, G. 2003. Experimental evidence for the physiological role of bacterial luciferase in the protection of cells against oxidative stress. Current Microbiology 47: 379-382.
    • (2003) Current Microbiology , vol.47 , pp. 379-382
    • Szpilewska, H.1    Czyz, A.2    Wegrzyn, G.3
  • 47
    • 17744373692 scopus 로고    scopus 로고
    • Characterization of the long-wavelength opsin from mecoptera and siphonaptera: Does a flea see?
    • Taylor, S.D., Dittmar de la Cruz, K., Porter, M.L., and Whiting, M.F. 2005. Characterization of the long-wavelength opsin from mecoptera and siphonaptera: does a flea see? Molecular Biology and Evolution 22: 1165-1174.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1165-1174
    • Taylor, S.D.1    Dittmar de la Cruz, K.2    Porter, M.L.3    Whiting, M.F.4
  • 48
    • 0035048566 scopus 로고    scopus 로고
    • The evolution of bioluminescent oxygen consumption as an ancient oxygen detoxification mechanism
    • Timmins, G.S., Jackson, S.K., and Swartz, H.M. 2001. The evolution of bioluminescent oxygen consumption as an ancient oxygen detoxification mechanism. Journal of Molecular Evolution 52: 321-332.
    • (2001) Journal of Molecular Evolution , vol.52 , pp. 321-332
    • Timmins, G.S.1    Jackson, S.K.2    Swartz, H.M.3
  • 49
    • 0344564130 scopus 로고    scopus 로고
    • Control of luminescence decay and flavin binding by the luxA carboxyl-terminal regions in chimeric bacterial luciferases
    • Valkova, N., Szittner, R., and Meighen, E.A. 1999. Control of luminescence decay and flavin binding by the luxA carboxyl-terminal regions in chimeric bacterial luciferases. Biochemistry 38: 13820-13828.
    • (1999) Biochemistry , vol.38 , pp. 13820-13828
    • Valkova, N.1    Szittner, R.2    Meighen, E.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.