Photonic crystals utilized for label-free and amplified fluorescence biodetection

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 6959, Issue , 2008, Pages

  Cunningham, Brian T ^a  

^a United States of America   (United States)

Author keywords

Fluorescence enhancement; Label free biosensors; Optical biosensors; Photonic crystal

Indexed keywords

FLUORESCENCE ENHANCEMENT; LABEL-FREE BIOSENSORS; OPTICAL BIOSENSORS;

BIOSENSORS; CONCENTRATION (PROCESS); DNA; GENE EXPRESSION;

PHOTONIC CRYSTALS;

EID: 44349162211     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.773626     Document Type: Conference Paper

References (57)

1. T. Arakawa and Y. Kita, "Refractive Index of Proteins in Organic Solvents.," Analytical Biochemistry, vol. 271, pp. 119-120, 1999.
2. Y. Amano and Q. Cheng, "Detection of influenza virus: traditional approaches and development of biosensors," Analytical andBioanalytical Chemistry, vol. 381, pp. 156-164, 2004.
3. P. M. Boltovets, B. A. Snopok, V. R. Boyko, T. P. Shevchenko, N. S. Dyachenko, and Y. M. Shirshov, "Detection of plant viruses using a surface plasmon resonance via complexing with specific antibodies," Journal of Virological Methods vol. 121, pp. 101-106, 2004.
4. M. A. Cooper, F. N. Dultsev, T. Minson, V. P. Ostanin, C. Abell, and D. Klenerman, "Direct and sensitive detection of a human virus by rupture event scanning," Nature Biotechnology, vol. 19, pp. 833-837, 2001.
5. D. J. Schofield and N. J. Dimmock, "Determination of affinities of a panel of IgGs and Fabs for whole enveloped (influenza A) virions using surface plasmon resonance," Journal of Virological Methods, vol. 62, pp. 33-42, 1996.
6. J. Bresee, U. Parashar, R. Holman, J. Gentsch, R. Glass, B. Evanoff, and e. al., " Generic Protocols: hospital-based surveillance to estimate the burden of rotavirus gastroenteritis in children and community based survey on utilization of health care services fro gastroenteritis in children," in Methods for detection of rotavirus, WHO, Ed.: WHO Publication, 2002, pp. 17-18.
7. B. T. Cunningham, P. Li, B. Lin, and J. Pepper, "Colorimetric resonant reflection as a direct biochemical assay technique," Sensors and Actuators B, vol. 81, pp. 316-328, 2002.
8. B. T. Cunningham, P. Li, S. Schulz, B. Lin, C. Baird, J. Gerstenmaier, C. Genick, F. Wang, E. Fine, and L. Laing, "Label-Free Assays on the BIND System," Journal of Biomolecular Screening, vol. 9, pp. 481-490, 2004.
9. B. T. Cunningham, J. Qiu, P. Li, and C. Baird, "Enhancing the surface sensitivity of colorimetric resonant optical biosensors," Sensors and Actuators B, vol. 87, pp. 365-370, 2002.
10. B. T. Cunningham, J. Qiu, P. Li, J. Pepper, and B. Hugh, "A plastic colorimetric resonant optical biosensor for multiparallel detection of label-free biochemical interactions," Sensors and Actuators B, vol. 85, pp. 219-226, 2002.
11. I. D. Block, L. L. Chan, and B. T. Cunningham, "Photonic Crystal Optical Biosensor Incorporating Structured Low-Index Porous Dielectric," Sensors and Actuators B, vol. 120, pp. 187-193, 2006.
12. I. D. Block, L. L. Chan, and B. T. Cunningham, "Large-area submicron replica molding of porous low-k dielectric films and applications to photonic crystal biosensor fabrication," Microelectronic Engineering, vol. 84, pp. 603-608, 2007.
13. P. Li, B. Lin, J. Gerstenmaier, and B. T. Cunningham, "A new method for label-free imaging of biomolecular interactions," Sensors and Actuators B, vol. 99, pp. 6-13, 2004.
14. L. L. Chan, P. Y. Li, D. Puff, and B. T. Cunningham, "A self-referenced assay method for label-free photonic crystal biosenosrs," IEEE Sensors Journal, vol. 6, pp. 1551-1556, 2006.
15. L. L. Chan, P. Y. Li, D. Puff, and B. T. Cunningham, "Self-reference assay method method for photonic crystal biosensors: application to small molecule analytes," Sensors and Actuators B, vol. 120, pp. 392-398, 2007.
16. C. J. Choi and B. T. Cunningham, "Single step fabrication of photonic crystal biosensors with polymer microfluidic channels by a replica molding process," Lab-On-A-Chip, vol. 6, pp. 1373-1380, 2006.
17. C. J. Choi and B. T. Cunningham, "A 96-well microplate incorporating a replica molded microfluidic network integrated with photonic crystal biosensors for high throughput kinetic biomolecular interaction analysis," Lab On A Chip, vol. 7, pp. 550-556, 2007.
18. L. L. Chan, S. Gosangari, K. Watkin, and B. T. Cunningham, "A label-free photonic crystal biosensor imaging method for detection of cancer cell cytotoxicity and proliferation," Apoptosis, vol. 12, pp. 1061-1068, 2007.
19. L. L. Chan, S. Gosangari, K. Watkin, and B. T. Cunningham, "Label-free imaging of cancer cells using photonic crystal biosensors and application to cytotoxicity screening of a natural compound library," Sensors and Actuators B, vol. Submitted April, 2007.
20. B. Lin, P. Y. Li, and B. T. Cunningham, "A label-free biosensor-based cell attachment assay for characterization of cell surface molecules," Sensors and Actuators B, vol. 114, pp. 559-561, 2006.
21. V. Pacradouni, W. J. Mandeville, A. R. Cowan, P. Paddon, J. F. Young, and S. R. Johnson, "Photonic band structure of dielectric membranes periodically textured in two dimensions," Physical Review B, vol. 62, pp. 4204-4207, 2000.
22. C. F. R. Mateus, M. C. Y. Huang, P. Li, B. T. Cunningham, and C. J. Chang-Hasnain, "Compact label-free biosensor using VCSEL-based measurement system," Photonics Technology Letters, IEEE, vol. 16, pp. 1712-1714, 2004.
23. B. Cunningham, B. Lin, J. Qiu, P. Li, J. Pepper, and B. Hugh, "A plastic colorimetric resonant optical biosensor for multiparallel detection of label-free biochemical interactions," Sensors and Actuators B: Chemical vol. 85, pp. 219-226, 2002.
24. A. Z. Kapikian, Y. Hoshino, and R. M. Chanock, "Rotaviruses," in Fields virology, D. M. Knipe and P. M. Howley, Eds., 4th ed. Philadelphia, PA: Lippincott Williams & Wilkins, 2001, pp. 1787-1833.
25. M. D. Rolsma, T. B. Kuhlenschmidt, H. B. Gelberg, and M. S. Kuhlenschmidt, "Structure and Function of a Ganglioside Receptor for Porcine Rotavirus," Journal of Virology, vol. 72, pp. 9079-9091, 1998.
26. B. I. Rosen, A. V. Parwani, S. Lopez, J. Flores, and L. J. Saif, "Serotypic differentiation of rotaviruses in field samples from diarrheic pigs by using nucleic acid probes specific for porcine VP4 and human and porcine VP7 genes," Journal of Clinical Microbiology, vol. 32, pp. 311-317, 1994.
27. T. A. Teodoroff, H. Tsunemitsu, K. Okamoto, K. Katsuda, M. Kohmoto, K. Kawashima, T. Nakagomi, and O. Nakagomi, "Predominance of Porcine Rotavirus G9 in Japanese Piglets with Diarrhea: Close Relationship of Their VP7 Genes with Those of Recent Human G9 Strains," Journal of Clinical Microbiology, vol. 43, pp. 1377-1384, 2005.
28. S. Winiarczyk, P. S. Paul, S. Mummidi, R. Panek, and Z. Gradzki, "Survey of Porcine Rotavirus G and P Genotype in oland and the United States Using RT-PCR," Journal of Veterinary Medicine Series B, vol. 49, pp. 373-378, 2002.
29. R. I. Glass, "New hope for defeating rotavirus," Scientific America, vol. 294, pp. 46-51, 54-5, 2006.
30. M. Abbaszadegan, P. Stewart, and M. LeChevallier, "A strategy for detection of viruses in groundwater by PCR," Applied and Environmental Microbiology, vol. 65, pp. 444-449, 1999.
31. C. D. Atreya, "Major foodborne illness causing viruses and current status of vaccines against the diseases," Foodborne Pathogens and Disease, vol. 1, pp. 89-96, 2004.
32. M. A. Borchardt, N. L. Haas, and R. J. Hunt, "Vulnerability of Drinking-Water Wells in La Crosse, Wisconsin, to Enteric-Virus Contamination from Surface Water Contributions," Applied Environmental Microbiology, vol. 70, pp. 5937-5946, 2004.
33. A. Gallay, H. De Valk, M. Cournot, B. Ladeuil, C. Hemery, C. Castor, F. Bon, F. Mégraud, P. Le Cann, J. C. Desenclos, and t. 0.1. Team, "A large multi-pathogen waterborne community outbreak linked to faecal contamination of a groundwater system, France, 2000," Clinical Microbiology and Infection, vol. 12, pp. 561-570, 2006.
34. R. S. Hopkins, P. Shillam, B. Gaspard, L. Eisnach, and R. J. Karlin, "Waterborne disease in Colorado: three years' surveillance and 18 outbreaks," American Journal of Public Health, vol. 75, pp. 254-257, 1985.
35. C. J. Hurst and C. P. Gerba, " Stability of Simian Rotavirus in Fresh and Estuarine Water," Applied and Environmental Microbiology, vol. 39, pp. 1-5, 1980.
36. W. J. Lodder and A. M. de Roda Husman, "Presence of Norovimses and Other Enteric Viruses in Sewage and Surface Waters in The Netherlands," Applied and Environmental Microbiology, vol. 71, pp. 1453-1461, 2005.
37. D. D. Mara, P. A. Sleigh, U. J. Blumenthal, and R. M. Carr, "Health risks in wastewater irrigation: Comparing estimates from quantitative microbial risk analyses and epidemiological studies," Journal of Water and Health, vol. 5, pp. 39-50, 2006.
38. M. C. Timenetsky, V. Gouvea, N. Santos, M. E. Alge, J. J. Kisiellius, and R. C. Carmona, "Outbreak of severe gastroenteritis in adults and children associated with type G2 rotavirus. Study Group on Diarrhea of the Instituto Adolfo Lutz," Journal of Diarrhoeal Diseases Research vol. 14, pp. 71-74, 1996.
39. M. D. Rolsma, H. B. Gelberg, and M. S. Kuhlenschmidt, "Assay for evaluation of rotavirus-cell interactions: identification of an enterocyte ganglioside fraction that mediates group A porcine rotavirus recognition," Journal of Virology, vol. 68, pp. 258-268, 1994.
40. L. Pontes, Y. Cordeiro, V. Giongo, M. Villas-Boas, A. Barreto, J. R. Ara-jo, and J. L. Silva, "Pressure-induced formation of inactive triple-shelled rotavirus particles is associated with changes in the spike protein VP4," Journal of Molecular Biology, vol. 307, pp. 1171-1179, 2001.
41. E. W. Voss, Fluorescein Hapten: An Immunological Probe. Boca Raton, FL: CRC Press, Inc., 1984.
42. H. B. Gellberg, J. S. Patterson, and G. N. Woode, "A longitudinal study of rotavirus antibody titers in swine in a closed specific pathogen-free herd," Veterinary Microbiology, vol. 28, pp. 231-242, 1991.
43. R. W. Schneider, C. A. Hollier, M. E. Palm, J. M. McKemy, J. R. Hernandez, L. Levy, and R. DeVries-Paterson, "First report of soybean rust caused by Phakopsora pachyrhizi in the continental United States," Plant Disease, vol. 89, pp. 774, 2005.
44. R. W. Schneider, C. A. Hollier, H. K. Whitman, M. E. Palm, J. M. McKemy, J. R. Hernandez, L. Levy, and R. DeVries-Paterson, "First report of soybean rust caused by Phakopsora pachyrhizi in the continental United States," Plant Disease, vol. 89, pp. 774, 2005.
45. V. P. Hennings, "[A few new Japanese Uredinaceae]," Hedwigia, vol. 42, pp. S107-108, 1903.
46. M. R. Miles, G. L. Hartman, and R. D. Frederick, "Soybean rust: Is the U.S. crop at risk?," 2003.
47. USDA, "Pest Information Platform for Extension and Education," 2007.
48. M. Livinston, R. Johansson, S. Daberkow, M. Robers, M. Ash, and V. Breneman, "Economic and Policy Implications of Wind-Borne Entry of Asian Soybean Rust into the United States. Electronic Outlook Report from the Economic Research Service. Outlook Report No. (OCS04D02). 22p.," 2004.
49. B. T. Cunningham and L. Laing, "Label-free detection of biomolecular interactions: applications in proteomics and drug discovery," Expert Opinions in Proteomics, vol. 3, pp. 271-281, 2006.
50. M. J. Feldstein, J. P. Golden, C. A. Rowe, B. D. MacCraith, and F. S. Ligler, "Array biosensor: optical and fluidics systems," Journal of Biomedical Microdevices, vol. 1, pp. 139-153, 1999.
51. D. Axelrod, T. P. Burghardt, and N. L. Thompson, "Total internal reflection fluorescence," Annual Rev. Biophys. Bioeng., vol. 13, pp. 247, 1984.
52. "Nikon: TIRF Microscopy: Introduction and Applications."
53. W. Budach, A. P. Abel, A. E. Bruno, and D. Neuschaefer, "Planar waveguides as high-performance sensing platforms for fluorescence-based multiplexed oligonucleotide hybridization assays," Analytical Chemistry, vol. 71, pp. 3347-3355, 1999.
54. W. Budach, D. Neuschafer, C. Wanke, and S.-D. Chibout, "Generation of transducers for fluorescence-based microarrays with enhanced sensitivity and their application for gene expression profiling," Analytical Chemistry, vol. 75, pp. 2571-2577, 2003.
55. D. Rosenblatt, A. Sharon, and A. A. Friesem, "Resonant grating waveguide structures," Quantum Electronics, IEEE Journal of, vol. 33, pp. 2038-2059, 1997.
56. M. Boroditsky, R. Vrijen, T. F. Krauss, R. Coccioli, R. Bhat, and E. Yablonovitch, "Spontaneous Emission Extraction and Purcell Enhancement from Thin-Film 2-D Photonic Crystals," J. Lightwave Technol., vol. 17, pp. 2096-2112, 1999.
57. N. Ganesh, W. Zhang, P. C. Mathias, E. Chow, J. A. N. T. Sooares, Viktor Malyarchuk, A. D. Smith, and B. T. Cunningham, "Enhanced fluorescence emission from quantum dots on a photonic crystal surface," Nature Nanotechnology, vol. 2, pp. 515-520, 2007.