The Prediction of Rice Gene by Fgenesh

Agricultural Sciences in China

Volumn 7, Issue 4, 2008, Pages 387-394

  ZHANG, Sheng li ^a,b   LI, Dong fang ^b   ZHANG, Gai sheng ^a   WANG, Jun wei ^a   NIU, Na ^a  

^a NORTHWEST A F UNIVERSITY   (China)

^b HENAN INSTITUTE OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

annotation; cDNA; exon; gene prediction; rice

Indexed keywords

JAPONICA; LILIOPSIDA; ORYZA SATIVA;

EID: 44149117234     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(08)60081-4     Document Type: Article

References (15)

1. Burge C., and Karlin S. Prediction of complete gene structure in human genomic DNA. Journal of Molecular Biology 268 (1997) 78-94
2. Burset M., and Guigo R. Evaluation of gene structure prediction programs. Genomics 34 (1996) 353-367
3. Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., et al. Sequence and analysis of rice chromosome 4. Nature 420 (2002) 316-320
4. Goff S., Ricke D., Lan T., Presting G., Wang R., Dunn M., Glazebrook J., Sessions A., Oeller P., Varma H., et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296 (2002) 92-100
5. Lomsadze A., Ter-hovhannisyan V., Chernoff Y., and Borodovsky M. Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Research 33 (2005) 6494-6506
6. Majoros W., Pertea M., Antonescu C., and Salzberg S. GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders. Nucleic Acids Research 31 (2003) 3601-3604
7. Pavy N., Rombauts S., Déhais P., Matté C., Ramana D., Leroy P., and Rouzé P. Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences. Bioinformatics 15 (1999) 887-899
8. Pertea M., and Salzberg S. Computational gene finding in plants. Plant Molecular Biology 48 (2002) 39-48
9. Salamov A., and Solovyev V. Ab initio gene finding in Drosophila genomic DNA. Genome Research 10 (2000) 516-522
10. Salzberg S., Delcher A., Kasif S., and White O. Microbial gene identification using interpolated Markov models. Nucleic Acids Research 26 (1998) 544-548
11. m. Functional & Integrative Genomics 2 (2002) 70-80
12. Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., et al. The genome sequence and structure of rice chromosome 1. Nature 420 (2002) 312-316
13. Werner T. Models for prediction and recognition of eukaryotic promoters. Mammalian Genome 23 (1999) 168-175
14. Yu J., Hu S., Wang J., Wong G., Li S., Liu B., Deng Y., Dai L., Zhou Y., Zhang X., et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296 (2002) 79-92
15. Zhang M. Computational prediction of eukaryotic protein-coding genes. Nature 3 (2002) 698-709