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Volumn 6, Issue 1, 2008, Pages 107-123

Design and analysis of quantitative differentail proteomics investigations using LC-MS technology

Author keywords

Experimental design; LC MS data analysis; Nonlinear regression; Quantitative label free LC MS

Indexed keywords

BIOLOGICAL MARKER;

EID: 44149114239     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720008003321     Document Type: Conference Paper
Times cited : (15)

References (23)
  • 1
    • 33645463240 scopus 로고    scopus 로고
    • Proteins associated with cisplatin resistance in ovarian cancer cells identified by quantitative proteomic technology and integrated with mRNA expression levels
    • Stewart JJ, White JT, Yan X, Collins S, Drescher CW, Urban ND, Hood L, Lin B, Proteins associated with cisplatin resistance in ovarian cancer cells identified by quantitative proteomic technology and integrated with mRNA expression levels, Mol Cell Proteomics 5 3):433-443, 2006.
    • (2006) Mol Cell Proteomics , vol.5 , Issue.3 , pp. 433-443
    • Stewart, J.J.1    White, J.T.2    Yan, X.3    Collins, S.4    Drescher, C.W.5    Urban, N.D.6    Hood, L.7    Lin, B.8
  • 2
    • 33645472456 scopus 로고    scopus 로고
    • Comparative proteomic analysis provides new insights into chilling stress responses in rice
    • Yan SP, Zhang QY, Tang ZC, Su WA, Sun WN, Comparative proteomic analysis provides new insights into chilling stress responses in rice, Mol Cell Proteomics 5(3): 484-496, 2006.
    • (2006) Mol Cell Proteomics , vol.5 , Issue.3 , pp. 484-496
    • Yan, S.P.1    Zhang, Q.Y.2    Tang, Z.C.3    Su, W.A.4    Sun, W.N.5
  • 5
    • 44149083521 scopus 로고    scopus 로고
    • SEQUEST; Eng J, Yates J, distributed by Thermo Finnigan; fields.scripps.edu/sequest
    • SEQUEST; Eng J, Yates J, distributed by Thermo Finnigan; fields.scripps.edu/sequest/
  • 6
    • 44149120709 scopus 로고    scopus 로고
    • X! Tandem; The Global Proteome Machine Organization, www.thegpm.org/ TANDEM/
    • X! Tandem; The Global Proteome Machine Organization, www.thegpm.org/ TANDEM/
  • 7
    • 14344250874 scopus 로고    scopus 로고
    • Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
    • Radulovic D, Jelveh S, Ryu S, Hamilton TG, Foss E, Mao Y, Emili A, Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry, Mol Cell Proteomics 3(10):984-997, 2004.
    • (2004) Mol Cell Proteomics , vol.3 , Issue.10 , pp. 984-997
    • Radulovic, D.1    Jelveh, S.2    Ryu, S.3    Hamilton, T.G.4    Foss, E.5    Mao, Y.6    Emili, A.7
  • 8
  • 9
    • 1842490016 scopus 로고    scopus 로고
    • Bioinformatics meets proteomics - Bridging the gap between mass spectrometry data analysis and cell biology
    • Kearney P, Thibault P, Bioinformatics meets proteomics - Bridging the gap between mass spectrometry data analysis and cell biology, J Bioinform Comput Biol 1(1): 183-200, 2003.
    • (2003) J Bioinform Comput Biol , vol.1 , Issue.1 , pp. 183-200
    • Kearney, P.1    Thibault, P.2
  • 10
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu H, Sadygov RG, Yates JR 3rd, A model for random sampling and estimation of relative protein abundance in shotgun proteomics, Anal Chem 76(14):4193-4201, 2004.
    • (2004) Anal Chem , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates 3rd, J.R.3
  • 11
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, Rappsilber J, Mann M, Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein, Mol. Cell Proteomics 4(9):1265-1272, 2005.
    • (2005) Mol. Cell Proteomics , vol.4 , Issue.9 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7
  • 13
    • 0034582319 scopus 로고    scopus 로고
    • Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules
    • Horn DM, Zubarev RA, McLafferty FW, Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules, J Am Soc Mass Spectrom 11(4):320-332, 2000.
    • (2000) J Am Soc Mass Spectrom , vol.11 , Issue.4 , pp. 320-332
    • Horn, D.M.1    Zubarev, R.A.2    McLafferty, F.W.3
  • 14
    • 44149085140 scopus 로고    scopus 로고
    • R; The R Project for Statistical Computing, www.r-project.org/
  • 16
    • 0014004384 scopus 로고
    • Diabetes, a new mutation in the mouse
    • Hummel KP, Dickie MM, Coleman DL, Diabetes, a new mutation in the mouse, Science 153(740):1127-1128, 1966.
    • (1966) Science , vol.153 , Issue.740 , pp. 1127-1128
    • Hummel, K.P.1    Dickie, M.M.2    Coleman, D.L.3
  • 17
    • 33750106380 scopus 로고    scopus 로고
    • Le Bihan T, Goh T, Stewart II, Salter AM, Bukhman Y, Dharsee M, Ewing R, Wisniewski JR, Differential analysis of membrane proteins in mouse fore- and hindbrain using a label-free approach, J Proteome Res 510 2701-2710, 2006.
    • Le Bihan T, Goh T, Stewart II, Salter AM, Bukhman Y, Dharsee M, Ewing R, Wisniewski JR, Differential analysis of membrane proteins in mouse fore- and hindbrain using a label-free approach, J Proteome Res 510 2701-2710, 2006.
  • 18
    • 1842559788 scopus 로고    scopus 로고
    • Comparing datasets from different experiments
    • Reproducibility of SELDI-TOF protein patterns in serum
    • Baggerly KA, Morris JS, Coombes KR, Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments, Bioinformatics 20(5):777-785, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.5 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 21
    • 33646907086 scopus 로고    scopus 로고
    • Reporting protein identification data: The next generation of guidelines
    • Bradshaw RA, Burlingame AL, Carr S, Aebersold R, Reporting protein identification data: The next generation of guidelines, Mol Cell Proteomics 5(5):787-788, 2006.
    • (2006) Mol Cell Proteomics , vol.5 , Issue.5 , pp. 787-788
    • Bradshaw, R.A.1    Burlingame, A.L.2    Carr, S.3    Aebersold, R.4
  • 22
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li C, Wong WH, Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection, Proc Natl Acad Sci USA 98(1):31-36, 2001.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 23
    • 2142721825 scopus 로고    scopus 로고
    • HysTag - A novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain
    • Olsen JV, Andersen JR, Nielsen PA, Nielsen ML, Figeys D, Mann M, Wisniewski JR, HysTag - A novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain, Mol Cell Proteomics 3(1):82-92, 2004.
    • (2004) Mol Cell Proteomics , vol.3 , Issue.1 , pp. 82-92
    • Olsen, J.V.1    Andersen, J.R.2    Nielsen, P.A.3    Nielsen, M.L.4    Figeys, D.5    Mann, M.6    Wisniewski, J.R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.