DNA barcoding in surveys of small mammal communities: A field study in Suriname

Molecular Ecology Resources

Volumn 8, Issue 3, 2008, Pages 471-479

  Borisenko, Alex V ^a   Lim, Burton K ^b   Ivanova, Natalia V ^a   Hanner, Robert H ^a   Hebert, Paul D N ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b DEPARTMENT OF NATURAL HISTORY   (Canada)

Author keywords

Biodiversity; Chiroptera; COI; cox 1 cytochrome c oxidase; Didelphimorphia; Mitochondrial; Rodentia

Indexed keywords

CHIROPTERA; DIDELPHIMORPHIA; MAMMALIA; RODENTIA;

EID: 43949083364     PISSN: 1755098X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1471-8286.2007.01998.x     Document Type: Article

References (32)

1. American Society of Mammalogists Animal Care Use Committee (1998) Guidelines for the capture, handling, and care of mammals as approved by the American Society of Mammalogists. Journal of Mammalogy, 79, 1416 1431.
2. Baker RJ, Bradley RD (2006) Speciation in mammals and the genetic species concept. Journal of Mammalogy, 87, 643 662.
3. Borissenko AV (1999) A mobile trap for capturing bats in flight. Plecotus et al., 2, 10 19.
4. Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert PDN (2007) DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Molecular Ecology Notes, 7, 184 190.
5. Dávalos LM (2006) The geography of diversification in the mormoopids (Chiroptera: Mormoopidae). Biological Journal of the Linnean Society, 88, 101 118.
6. Edwards SV, Birks S, Brumfield RT, Hanner R (2005) Future of avian genetic resources collections: archives of evolutionary and environmental history. Auk, 122, 979 984.
7. Hajibabaei M, deWaard JR, Ivanova NV et al 2005) Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1959 1967.
8. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences, USA, 103, 968 971.
9. Hajibabaei M, Singer GAC, Hebert PDN, Hickey DA (2007) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics, 23, 167 172.
10. Hanner R, Corthals A, Dessauer HC (2005) Salvage of genetically valuable tissues following a freezer failure. Molecular Phylogenetics and Evolution, 34, 452 455.
11. Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Systematic Biology, 54, 852 859.
12. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, 313 321.
13. Hebert PDN, Ratnasingham S, deWaard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B, Biological Sciences, 270, S96 S99.
14. Hsiao KM, Lin HM, Pan H et al 1999) Application of FTA sample collection and DNA purification system on the determination of CTG trinucleotide repeat size by PCR-based Southern blotting. Journal of Clinical Laboratory Analysis, 13, 188 193.
15. Ivanova NV, deWaard JR, Hebert PDN (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998 1002.
16. Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7, 544 548.
17. Janzen DH, Hajibabaei M, Burns JM et al 2005) Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philosophical transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1835 1845.
18. Kerr KCR, Stoeckle MY, Dove C et al 2007) Comprehensive DNA barcode coverage of North American birds. Molecular Ecology Notes, 7, 535 543.
19. Kilpatrick CW (2002) Noncryogenic preservation of mammalian tissues for DNA extraction: an assessment of storage methods. Biochemical Genetics, 40, 53 62.
20. Kumar S, Tamura K, Nei M (2004) mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
21. Lewis-Oritt N, Porter CA, Baker RJ (2001) Molecular systematics of the family mormoopidae (Chiroptera) based on cytochrome b and recombination activating gene 2 sequences. Molecular Phylogenetics and Evolution, 20, 426 436.
22. Lim BK, Engstrom MD (2005) Mammals of Iwokrama Forest. Proceedings of the Academy of Natural Sciences of Philadelphia, 154, 71 108.
23. Livia L, Antoniella P, Hovirag L, Mauro N, Panara F (2006) A nondestructive, rapid, reliable and inexpensive method to sample, store and extract high-quality DNA from fish body mucus and buccal cells. Molecular Ecology Notes, 6, 257 260.
24. Pfunder M, Holzgang O, Frey JE (2004) Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Molecular Ecology, 13, 1277 1286.
25. Ratnasingham S, Hebert PDN (2007) BOLD: the barcode of life data system http://www.barcodinglife.org). Molecular Ecology Notes, 7, 355 364.
26. Smith LM, Burgoyne LA (2004) Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper. BMC Ecology, 4, 4.
27. Smith MA, Fisher BL, Hebert PDN (2005) DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1825 1834.
28. Vanek D, Hradil R, Budowle B (2001) Czech population data on 10 short tandem repeat loci of SGM Plus STR system kit using DNA purified in FTA cards. Forensic Science International, 119, 107 108.
29. Velazco PM (2005) Systematics and phylogenetic relationships of the broad-nosed bats, genus Platyrrhinus (Chiroptera, Phyllostomidae). Fieldiana: Zoology, 105, 1 53.
30. Walters C, Hanner R (2006) Platforms for DNA banking. In : Issues in Genetic Resources DNA Banks - Providing Novel Options for Genebanks? (eds Vicente Cd, Andersson MS pp. 25 35. International Plant Genetic Resources Institute, Rome, Italy.
31. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1847 1857.
32. Wilson DE, Reeder DM (2005) Mammal Species of the World: A Taxonomic and Geographyraphic Reference, 3rd edn. Johns Hopkins University Press, Baltimore.