Molecular diversity and genomic organisation of the α, β and γ eye lens crystallins from the Antarctic toothfish Dissostichus mawsoni

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 3, Issue 2, 2008, Pages 155-171

  Kiss, Andor J ^a   Cheng, C H Christina ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Alpha; Antarctic toothfish; Bacterial artificial chromosome; Beta; cDNA; Crystallins; Gamma; Genome organisation; Lens; Tetraodon

Indexed keywords

ALPHA CRYSTALLIN; BETA CRYSTALLIN; COMPLEMENTARY DNA; GAMMA CRYSTALLIN; ISOPROTEIN; METHIONINE;

ANIMAL EXPERIMENT; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; COLD ACCLIMATIZATION; COLD SENSITIVITY; CONTIG MAPPING; CONTROLLED STUDY; DNA FINGERPRINTING; DNA SEQUENCE; FISH; GENE FUNCTION; GENE LIBRARY; GENETIC CONSERVATION; GENETIC ORGANIZATION; GENETIC VARIABILITY; LENS; MAMMAL; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VERTEBRATE;

BACTERIA (MICROORGANISMS); DISSOSTICHUS MAWSONI; MAMMALIA; PISCES; TETRAODON; VERTEBRATA;

EID: 43849104350     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2008.02.002     Document Type: Article

References (73)

1. Banh A. Sivak J.G. Laser scanning analysis of cold cataract in young and old bovine lenses Mol. Vis. 10 2004 144 147
2. Bateman O.A. Lubsen N.H. Slingsby C. Association behaviour of human betaB1-crystallin and its truncated forms Exp. Eye Res. 73 2001 321 331
3. Bateman O.A. Sarra R. van Genesen S.T. Kappe G. Lubsen N.H. Slingsby C. The stability of human acidic beta-crystallin oligomers and hetero-oligomers Exp. Eye Res. 77 2003 409 422
4. Behan-Martin M.K. Jones G.R. Bowler K. Cossins A.R. A near perfect temperature adaptation of bilayer order in vertebrate brain membranes Biochim. Biophys. Acta 1151 1993 216 222
5. Behrens M. Wilkens H. Schmale H. Cloning of the alphaA-crystallin genes of a blind cave form and the epigean form of Astyanax fasciatus : a comparative analysis of structure, expression and evolutionary conservation Gene 216 1998 319 326
6. Benedek G.B. Cataract as a protein condensation disease: the Proctor Lecture Invest. Ophthalmol. Vis. Sci. 38 1997 1911 1921
7. Bennardini F. Wrzosek A. Chiesi M. Alpha B-crystallin in cardiac tissue. Association with actin and desmin filaments Circ. Res. 71 1992 288 294
8. Björk I. Studies on g-crystallin from calf lens: I. Isolation by gel filtration Exp. Eye Res. 1 1961 145 154
9. Bloemendal H. Berbers G.A. De Jong W.W. Ramaekers F.C. Vermorken A.J. Dunia I. Benedetti E.L. Interaction of crystallins with the cytoskeletal-plasma membrane complex of the bovine lens Ciba Found. Symp. 106 1984 177 190
10. Bloemendal H. De Jong W. Jaenicke R. Lubsen N.H. Slingsby C. Tardieu A. Ageing and vision: structure, stability and function of lens crystallins Prog. Biophys. Mol. Biol. 86 2004 407 485
11. Bova M.P. Ding L.L. Horwitz J. Fung B.K. Subunit exchange of alphaA-crystallin J Biol Chem 272 1997 29511 29517
12. Broide M.L. Berland C.R. Pande J. Ogun O.O. Benedek G.B. Binary-liquid phase separation of lens protein solutions Proc. Natl. Acad. Sci. U. S. A. 88 1991 5660 5664
13. Caspers G.J. Leunissen J.A. de Jong W.W. The expanding small heat-shock protein family, and structure predictions of the conserved “alpha-crystallin domain” J. Mol. Evol. 40 1995 238 248
14. Castellarin S.D. Di Gaspero G. Marconi R. Nonis A. Peterlunger E. Paillard S. Adam-Blondon A.F. Testolin R. Colour variation in red grapevines ( Vitis vinifera L.): genomic organisation, expression of flavonoid 3'-hydroxylase, flavonoid 3',5'-hydroxylase genes and related metabolite profiling of red cyanidin-/blue delphinidin-based anthocyanins in berry skin BMC Genomics 7 2006 12
15. Chang T. Jiang Y.J. Chiou S.H. Chang W.C. Carp gamma-crystallins with high methionine content: cloning and sequencing of the complementary DNA Biochim. Biophys. Acta 951 1988 226 229
16. Chen J.-Y. Chang B.-E. Chen Y.-H. Lin C.J.-F. Wu J.-L. Kuo C.-M. Molecular cloning, developmental expression, and hormonal regulation of zebrafish ( Danio rerio ) [beta] crystallin B1, a member of the superfamily of [beta] crystallin proteins Biochem. Biophys. Res. Commun. 285 2001 105 110
17. Cheng C.H. Chen L. Evolution of an antifreeze glycoprotein Nature 401 1999 443 444
18. Cheng C.-H.C. Nicodemus J. Silic S. Ghigliotti L. Pisano E. Genomic analysis of the evolution of antifreeze glycoprotein genes in antarctic notothenioid fish Joint Genomics Institute User Meeting vol. 2 2007 US Department of Energy Mariott Hotel, Walnut Creek, California
19. Chiou S.H. Chang T. Chang W.C. Kuo J. Lo T.B. Characterization of lens crystallins and their mRNA from the carp lenses Biochim. Biophys. Acta 871 1986 324 328
20. Clark J.I. Benedek G.B. The effects of glycols, aldehydes, and acrylamide on phase separation and opacification in the calf lens Invest. Ophthalmol. Vis. Sci. 19 1980 771 776
21. Clark M.S. Clarke A. Cockell C.S. Convey P. Detrich H.W. III Fraser K.P.P. Johnston I.A. Methe B.A. Murray A.E. Peck L.S. Römisch K. Rogers A.D. Antarctic genomics Compar. Funct. Genom. 5 2004 230 238
22. Coop A. Goode D. Sumner I. Crabbe M.J. Effects of controlled mutations on the N- and C-terminal extensions of chick lens beta B1 crystallin Graefe Arch. Clin. Exp. Ophthalmol. 236 1998 146 150
23. Dahlman J.M. Margot K.L. Ding L. Horwitz J. Posner M. Zebrafish alpha-crystallins: protein structure and chaperone-like activity compared to their mammalian orthologs Mol. Vis. 11 2005 88 96
24. de Jong W.W. Leunissen J.A. Voorter C.E. Evolution of the alpha-crystallin/small heat-shock protein family Mol. Biol. Evol. 10 1993 103 126
25. Delaye M. Clark J.I. Benedek G.B. Identification of the scattering elements responsible for lens opacification in cold cataracts Biophys. J. 37 1982 647 656
26. den Dunnen J.T. Szpirer J. Levan G. Islam Q. Schoenmakers J.G. All six rat gamma-crystallin genes are located on chromosome 9 Exp. Eye Res. 45 1987 747 750
27. den Dunnen J.T. van Neck J.W. Cremers F.P. Lubsen N.H. Schoenmakers J.G. Nucleotide sequence of the rat gamma-crystallin gene region and comparison with an orthologous human region Gene 78 1989 201 213
28. Detrich H.W. III Cold-stable microtubules from Antarctic fish G. di Priscu Life Under Extreme Conditions: Biochemical Adaptations 1991 Springer-Verlag Berlin 35 49
29. DeVries A.L. The role of antifreeze glycopeptides and peptides in the freezing avoidance of antarctic fishes Comp. Biochem. Physiol. B 90 1988 611 621
30. di Prisco G. Eastman J.T. Giordano D. Parisi E. Verde C. Biogeography and adaptation of Notothenioid fish: hemoglobin function and globin-gene evolution Gene 398 2007 143 155
31. Eastman J.T. Antarctic Fish Biology: Evolution in a Unique Environment 1993 Inc., New York Academic Press
32. Franck E. Madsen O. van Rheede T. Ricard G. Huynen M.A. de Jong W.W. Evolutionary diversity of vertebrate small heat shock proteins J. Mol. Evol. 59 2004 792 805
33. Gellman S.H. On the role of methionine residues in the sequence-independent recognition of nonpolar protein surfaces Biochemistry 30 1991 6633 6636
34. Hall T. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp. Ser. 41 1999 95 98
35. Hall B.G. Phylogenetic Trees Made Easy: A How-to Manual 2004 Sunderland, Mass Sinauer Associates
36. Hejtmancik J.F. Thompson M.A. Wistow G. Piatigorsky J. cDNA and deduced protein sequence for the beta B1-crystallin polypeptide of the chicken lens. Conservation of the PAPA sequence J. Biol. Chem. 261 1986 982 987
37. Kiss, A.J., 2005. Functional, biochemical and molecular analyses of the cold stable eye lens crystallins from the Antarctic toothfish Dissostichus mawsoni . (Dissertation). Ecology, Ethology & Evolution. University of Illinois. Urbana-Champaign.
38. Kiss A.J. Mirarefi A.Y. Ramakrishnan S. Zukoski C.F. Devries A.L. Cheng C.H. Cold-stable eye lens crystallins of the Antarctic nototheniid toothfish Dissostichus mawsoni Norman J. Exp. Biol. 207 2004 4633 4649
39. Kroger R.H.H. Campbell M.C.W. Munger R. Fernald R.D. Refractive index distribution and spherical aberration in the crystalline lens of the African cichlid fish haplochromis burtoni Vis. Res. 34 1994 1815 1822
40. Liu C. Asherie N. Lomakin A. Pande J. Ogun O. Benedek G.B. Phase separation in aqueous solutions of lens gamma-crystallins: special role of gS Proc. Natl. Acad. Sci. U. S. A. 93 1996 377 382
41. Lu S.F. Pan F.M. Chiou S.H. Characterization of gamma-crystallin from the eye lens of bullfrog: complexity of gamma-crystallin multigene family as revealed by sequence comparison among different amphibian species J. Protein. Chem. 15 1996 103 113
42. Marchetti M.A. Pizarro G.O. Sagher D. Deamicis C. Brot N. Hejtmancik J.F. Weissbach H. Kantorow M. Methionine sulfoxide reductases B1, B2, and B3 are present in the human lens and confer oxidative stress resistance to lens cells Invest. Ophthalmol. Vis. Sci. 46 2005 2107 2112
43. McDermott J.B. Cvekl A. Piatigorsky J. A complex enhancer of the chicken beta A3/A1-crystallin gene depends on an AP-1-CRE element for activity Invest. Ophthalmol. Vis. Sci. 38 1997 951 959
44. Miyake T. Amemiya C.T. BAC libraries and comparative genomics of aquatic chordate species Comp. Biochem. Physiol. C 138 2004 233 244
45. Narberhaus F. Alpha-crystallin-type heat shock proteins: socializing minichaperones in the context of a multichaperone network Microbiol. Mol. Biol. Rev. 66 2002 64 93
46. Nelson W. Soderlund C. Software for restriction fragment physical maps K. Meksem G. Kahl The Handbook of Plant Genome Mapping: Genetic and Physical Mapping vol. 1 2005 Wiley-VCH Hoboken, NJ 285 306
47. NRC Frontiers in Polar Biology in the Genomic Era 2003 Washington, D.C National Academies Press
48. Nylander J.A.A. MrModeltest vol. Program distributed by the author 2004 Evolutionary Biology Centre, Uppsala University
49. Pan F.-M. Chuang M.-H. Chiou S.-H. Characterization of gS-crystallin isoforms from lip shark ( Chiloscyllium colax ): Evolutionary comparison between gS and b/g crystallins Biochem. Biophys. Res. Commun. 240 1997 51 56
50. Parker R.W. Paige K.N. DeVries A.L. Genetic variation among populations of the Antarctic toothfish: evolutionary insights and implications for conservation Polar Biol. 25 2002 256 261
51. Piatigorsky J. Multifunctional lens crystallins and corneal enzymes. More than meets the eye Ann. N. Y. Acad. Sci. 842 1998 7 15
52. Pointer M.A. Cheng C.-H.C. Bowmaker J.K. Parry J.W.L. Soto N. Jeffery G. Cowing J.A. Hunt D.M. Adaptations to an extreme environment: retinal organisation and spectral properties of photoreceptors in Antarctic notothenioid fish J. Exp. Biol. 208 2005 2363 2376
53. Posner M. Kantorow M. Horwitz J. Cloning, sequencing and differential expression of alphaB-crystallin in the zebrafish, Danio rerio Biochim. Biophys. Acta 1447 1999 271 277
54. Privalov P.L. Cold denaturation of proteins Crit. Rev. Biochem. Mol. Biol. 25 1990 281 305
55. Rajaraman K. Raman B. Ramakrishna T. Rao C.M. Interaction of human recombinant alphaA- and alphaB-crystallins with early and late unfolding intermediates of citrate synthase on its thermal denaturation FEBS Lett. 497 2001 118 123
56. Riyahi K. Shimeld S.M. Chordate betagamma-crystallins and the evolutionary developmental biology of the vertebrate lens Comp. Biochem. Physiol. B 147 2007 347 357
57. Runkle S. Hill J. Kantorow M. Horwitz J. Posner M. Sequence and spatial expression of zebrafish ( Danio rerio ) alphaA-crystallin Mol. Vis. 8 2002 45 50
58. Sagher D. Brunell D. Hejtmancik J.F. Kantorow M. Brot N. Weissbach H. Thionein can serve as a reducing agent for the methionine sulfoxide reductases Proc. Natl. Acad. Sci. U. S. A. 103 2006 8656 8661
59. Sambrook J. Russell D.W. Protocol 3: selection of poly(A)+ RNA by oligo(dT)-cellulose chromatography N. Irwin K.A. Janssen Molecular Cloning: A Laboratory Manual vol. 1 2001 Cold Spring Harbor Laboratory Press Cold Spring Harbor 7.13 17.17
60. Shimeld S.M. Purkiss A.G. Dirks R.P. Bateman O.A. Slingsby C. Lubsen N.H. Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens Curr. Biol. 15 2005 1684 1689
61. Siezen R.J. Benedek G.B. Controlled modulation of the phase separation and opacification temperature of purified bovine gamma IV-crystallin Curr. Eye Res. 4 1985 1077 1085
62. Simmons M.P. Ochoterena H. Freudenstein J.V. Amino acid vs. nucleotide characters: challenging preconceived notions Mol. Phylogenet. Evol. 24 2002 78 90
63. Skow L.C. Donner M.E. Huang S.M. Gardner J.M. Taylor B.A. Beamer W.G. Lalley P.A. Mapping of mouse gamma crystallin genes on chromosome 1 Biochem. Genet. 26 1988 557 570
64. Slingsby C. Clout N.J. Structure of the crystallins Eye 13 1999 395 402
65. Smith A.A. Wyatt K. Vacha J. Vihtelic T.S. Zigler J.S. Jr. Wistow G.J. Posner M. Gene duplication and separation of functions in alphaB-crystallin from zebrafish ( Danio rerio ) FEBS J. 273 2006 481 490
66. Soderlund C. Humphray S. Dunham A. French L. Contigs built with fingerprints, markers, and FPC V4.7 Genome Res. 10 2000 1772 1787
67. Van Montfort R.L. Bateman O.A. Lubsen N.H. Slingsby C. Crystal structure of truncated human betaB1-crystallin Protein Sci. 12 2003 2606 2612
68. Waddell P.J. Steel M.A. General time-reversible distances with unequal rates across sites: mixing gamma and inverse Gaussian distributions with invariant sites Mol. Phylogenet. Evol. 8 1997 398 414
69. Willard H.F. Meakin S.O. Tsui L.C. Breitman M.L. Assignment of human gamma crystallin multigene family to chromosome 2 Somat. Cell Mol. Genet. 11 1985 511 516
70. Wistow G. A project for ocular bioinformatics: NEIBank Mol. Vis. 8 2002 161 163
71. Wistow G. Wyatt K. David L. Gao C. Bateman O. Bernstein S. Tomarev S. Segovia L. Slingsby C. Vihtelic T. gN-crystallin and the evolution of the bg-crystallin superfamily in vertebrates FEBS J. 272 2005 2276 2291
72. Wu Z. Delaglio F. Wyatt K. Wistow G. Bax A. Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR Protein Sci. 14 2005 3101 3114
73. Yu C.M. Chang G.G. Chang H.C. Chiou S.H. Cloning and characterization of a thermostable catfish alphaB-crystallin with chaperone-like activity at high temperatures Exp. Eye Res. 79 2004 249 261