Speciated GA for optimal ensemble classifiers in DNA microarray classification

Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004

Volumn 1, Issue , 2004, Pages 590-597

  Cho, Sung Bae ^a   Park, Chanho ^a  

^a Yonsei University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DNA CHIPS; ENSEMBLE CLASSIFIERS; MICROARRAY TECHNOLOGY;

CHROMOSOMES; CLASSIFICATION (OF INFORMATION); DATA ACQUISITION; DNA; GENES; LEARNING SYSTEMS; MICROSCOPIC EXAMINATION; OPTIMIZATION; RNA;

GENETIC ALGORITHMS;

EID: 4344698991     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (20)

1. T. Golub, D. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. Mesirov, H. Coller, M. Loh, J. Downing, M. Caligiuri, C. Bloomfield and E. Lander, "Molecular classification of cancer: class discovery and class prediction by gene expression monitorning," Science, 286, pp. 531-537, 1999.
2. U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Y. D. Mack and J. Levine, "Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays," Proc. Natl. Acad. Sci. USA, 96, pp. 6745-6750, 1999.
3. A. Ben-Dor, L. Bruhn, N. Friedman, I. Nachman, M. Schummer and N. Yakhini, "Tissue classification with gene expression profiles," Journal of Computational Biology, 7, pp. 559-584, 2000.
4. L. Li, C. R. Weinberg, T. A. Darden and L. G. Pedersen, "Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method," Bioinformatics, 17, pp. 1131-1142, 2001.
5. J. Khan, J. S. Wei, M. Ringner, L. H. Saal, M. Ladanyi, F. Westermann, F. Berthold, M. Schwab, C. R. Antonescu, C. Peterson and P. S. Meltzer, "Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks," Nature Medicine, 7, pp. 673-679, 2001.
6. R. O. Duda, P. E. Hart and D. G. Stork, Pattern Classification, 2nd Ed., Wiley Interscience. 2001.
7. S.-B. Cho and J. Ryu, "Classifying gene expression data of cancer using classifier ensemble with mutually exclusive features," Proc. of the IEEE, 90, pp. 1744-1753, 2002.
8. C. Park and S.-B. Cho, "Evolutionary ensemble classifier for lymphoma and colon cancer classification," Proc. of Congress on Evolutionary Computation, pp. 2378-2385, 2003.
9. K. Deb, D. E. Goldberg, "An investigation of niche and species formation in genetic function optimization," Proc. 3rd Int. Conf. Genetic Algorithms, pp. 42-50, 1989.
10. M. B. Eisen, P. T. Spellman, P O. Brown and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc. Natl Acad. Sci. USA, 95, pp. 14863-14868, 1998.
11. J. L. DeRisi, V. R. Iyer and P. O. Brown, "Exploring the metabolic and genetic control of gene expression on a genomic scale," Science, 278, pp. 680-686, 1997.
12. D. E. Goldberg, Genetic Algorithms in Search, Optimization and Machine Learning. Addison Wesley. 1989.
13. J. Liu and H. Iba, "Selecting informative genes with parallel genetic algorithms in tissue classification," Genome Informatics, 12, pp. 14-23, 2001.
14. I. T. Jolliffe, Principal Component Analysis. Springer, New York. 1986.
15. K. S. Hwang, S. -B. Cho, "Evolving diverse hardwares using speciated genetic algorithm," Proc. of Congress on Evolutionary Computation, pp. 437-442, 2002.
16. D. Opitz and R. Maclin, "Popular ensemble methods: An empirical study," Journal of Artificial Intelligence Research, 11, pp. 169-198, 1999.
17. E. Bauer and R. Kohavi, "An empirical comparison of voting classification algorithms: Bagging, boosting, and variants," Machine Learning, 36, pp. 105-139, 1999.
18. L. Hansen and P. Salamon, "Neural network ensembles," IEEE Transactions on Pattern Analysis and Machine Intelligence, 12, pp. 993-1001, 1990.
19. A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Jr. Hudson, L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, E. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown and L. M. Staudt, "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling," Nature, 403, pp. 503-511, 2000.
20. H.-H. Won and S.-B. Cho, "Data mining for gene expression profiles from DNA microarray," International Journal of Software Engineering and Knowledge Engineering, 13, pp. 593-608, 2003.