Identification of a novel chromosomal region associated with infectious hematopoietic necrosis (IHN) resistance in rainbow trout Oncorhynchus mykiss

Fish Pathology

Volumn 39, Issue 2, 2004, Pages 95-101

  Sok, Kean Khoo ^a,b   Ozaki, Akiyuki ^b,c   Nakamura, Fusayuki ^d   Arakawa, Tetsuya ^d   Ishimoto, Shinichi ^d   Nickolov, Radoslav ^e   Sakamoto, Takashi ^b   Akutsu, Tetsuya ^f   Mochizuki, Mamiko ^f   Denda, Ikuo ^g   Okamoto, Nobuaki ^b  

^a VAN ANDEL INSTITUTE   (United States)

^b TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^c UNIVERSITY OF GUELPH   (Canada)

^d Aichi Fisheries Research Institute   (Japan)

^e MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

^f Shizuoka Prefectural Fisheries Experiment Station   (Japan)

^g Nagano Prefectural Fisheries Experimental Station   (Japan)

Author keywords

Chromosomal region; Genetic linkage map; IHN resistance; Infectious hematopoietic necrosis; Microsatellite marker; Oncorhynchus mykiss; Rainbow trout

Indexed keywords

INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; ONCORHYNCHUS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 4344666081     PISSN: 0388788X     EISSN: None     Source Type: Journal    
DOI: 10.3147/jsfp.39.95     Document Type: Article

References (57)

1. Amend, D. F., W. T. Yasutake and R. W. Mead (1969): A hematopoietic virus disease of rainbow trout and sockeye salmon. Trans. Am. Fish. Soc., 98, 796-804.
2. Arai, K. (2001): Genetic improvement of aquaculture finfish species by chromosome manipulation techniques in Japan. Aquaculture, 197, 205-228.
3. Busch, R. A. (1983): Viral disease considerations in the commercial trout industry in Idaho. In "Workshop on viral diseases of salmonid fishes in the Columbia River Basin" (ed. by J. C. Leong and T. Y. Barilla). Bouneville Power Administration Special Publication, Portland, OR, pp. 84-100.
4. n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity, 71, 488-496.
5. Ferguson, M. (1994): The role of molecular genetic markers in the management of cultured fishes. Rev. Fish Bio. Fisheries, 4, 351-373.
6. Gjedrem, T., R. Salte and H. M. Gjoen (1991): Genetic variation in susceptibility of Atlantic salmon to furunculosis. Aquaculture, 97, 1-6.
7. Gootwine, E., A. Zenu, A. Bor, S. Yossafi, A. Rosov and G. E. Pollott (2001): Genetic and economic analysis of introgression the B allele of the FecB (Booroola) gene into the Awassi and Assaf dairy breeds. Livestock Prod. Sci., 71, 49-58.
8. Ibarra, A. M., R. P. Hedrick and G. A. E. Gall (1994): Genetic analysis of rainbow trout susceptibility to the myxosporen, Ceratomyxa shasta. Aquaculture, 120, 239-262.
9. Kearsey, M.J. and A. G. L. Farquhar (1998): QTL analysis in plants; where are we now? Heredity, 80, 137-142.
10. Khoo, S. K. (2000): Linkage analysis of quantitative trait loci (QTL) associated with infectious haematopoeitic necrosis (IHN) virus resistance in rainbow trout (Oncorhynchus mykiss), using microsatellites and AFLP genetic markers. Ph.D. thesis, Department of Aquatic Biosciences, Tokyo University of Fisheries, Japan. 69 p.
11. Khoo, S. K., A. Ozaki, T. Sakamoto and N. Okamoto (2000a): Rapid communication: two highly polymorphic dinucleotide microsatellites in rainbow trout (Oncorhynchus mykiss): OmyRGT18TUF and OmyRGT23TUF. J. Anim. Sci., 78, 490.
12. Khoo, S. K., A. Ozaki, T. Sakamoto and N. Okamoto (2000b): Four highly polymorphic dinucleotide microsatellites in rainbow trout (Oncorhynchus mykiss). Anim. Genet, 31, 73.
13. Kruglyak, L. (1996): Thresholds and sample sizes. Nat. Genet., 14, 132-133.
14. Lander, E. S. and N. J. Schork (1994): Genetic dissection of complex traits. Science, 265, 2037-2048.
15. LaPatra, S. E. (1998): IHN control strategies in the commercial rainbow trout industry. In "Proceeding of the infectious hematopoietic necrosis virus workshop". British Columbia, Ministry of Fisheries, Aquaculture and Commercial Fisheries Branch, Canada, pp. 11-14.
16. Manly, K. F. and J. M. Olson (1999): Overview of QTL mapping software and introduction to Map Manager QT. Mammal Genome, 10, 327-334.
17. Martinez, V. A., W. G. Hill and S. A. Knott (2002): On the use of double haploids for detecting QTL in outbred populations. Heredity, 88, 423-431.
18. McConnell, S. K., P. O'Reilly, L. Hamilton, J. M. Wright and P. Bentzen (1995): Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): genetic differentiation of North American and European populations. Can. J. Fish. Aquat. Sci., 52, 1863-1872.
19. McIntyre, J. D. and D. F. Amend (1978): Heritability of tolerance for IHN in sockeye salmon Oncorhynchus nerka. Trans. Am. Fish. Soc., 197, 305-308.
20. Morris, D. B., K. R. Richard and J. M. Wright (1996): Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic study in salmonids. Can. J. Fish. Aquat. Sci., 53, 120-126.
21. Nakamura, K., A. Ozaki, T. Akutsu, K. Iwai, T. Sakamoto, G. Yoshizaki and N. Okamoto (2001): Genetic mapping of the dominant albino locus in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics, 265, 687-693.
22. Nakamura, Y. (1986): Linkage analysis and highly polymorphic DNA marker. Protein, Nucl. Acid Enz., 31, 1354-1369.
23. Nichols, K. M., W. P. Young, R. G. Danzmann, B. D. Robison, C. Rexroad, M. Noakes, R. B. Phillips, P. Bentzen, I. Spies, K. Knudsen, F. W. Allendorf, B. M. Cunningham, J. Brunelli, H. Zhang, S. Ristow, R. Drew, K. H. Brown, P. A. Wheeler and G. H. Thorgaard (2003): A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Anim. Genet., 34, 102-115.
24. Office International des Epizooties (OIE) (2002): International Aquatic Animal Health Code, OIE, Paris, 203 p.
25. Okamoto, N., M. Tanaka, H. Fukuda, S. Suzuki, Y. Yasuda and T. Sano (1987): A selected strain (RT-101) of rainbow trout, Salmo gairdneri Richardson, highly sensitive to IPN virus. Bull. Eur. Ass. Fish Patho., 7, 2-4.
26. Okamoto, N., T. Tayama, M. Kawanobe, N. Fujiki, Y. Yasuda and T. Sano (1993): Resistance of a rainbow trout strain to infectious pancreatic necrosis. Aquaculture, 117, 71-76.
27. Ott, J (1999): Analysis of human genetic linkage, 3rd ed. John Hopkins University Press, USA, 382 p.
28. Ozaki, A., S. K. Khoo, T. Sakamoto and N. Okamoto (1999): Two highly polymorphic dinucleotide microsatellites in rainbow trout (Oncorhynchus mykiss): OmyRGT7TUF and OmyRGT8TUF. Anim. Genet., 30, 393.
29. Ozaki, A., T. Sakamoto, S. K. Khoo, K. Nakamura, M. R. M. Coimbra, T. Akutsu and N. Okamoto (2001): Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics, 265, 23-31.
30. Ozaki, A., S. K. Khoo, T. Sakamoto and N. Okamoto (2003): Thirty-one polymorphic microsatellite markers for genetic mapping in rainbow trout (Oncorhynchus mykiss). Anim. Genet., 34, 315-317.
31. Ozaki, A., T. Sakamoto, S. K. Khoo, K. Nakamura, M. R. M. Coimbra, T. Akutsu and N. Okamoto (2001): Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics, 265, 23-31.
32. Palti, Y., J. E. Parsons and G. H. Thorgaard (1999): Identification of candidate DNA markers associated with IHN virus resistance in backcrosses of rainbow (Oncorhynchus mykiss) and cutthroat trout (O. clarki). Aquaculture, 173, 81-94.
33. Palti, Y., K. M. Nichols, K. I. Waller, J. E. Parsons and G. H. Thorgaard (2001): Association between DNA polymorphisms tightly linked to MHC class II genes and IHN virus resistance in backcrosses of rainbow and cutthroat trout. Aquaculture, 194, 283-289.
34. Palti, Y., R. G. Danzmann and C. E. Rexroad III (2003): Characterization and mapping of 19 polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss). Anim. Genet., 34, 146-160.
35. Palti, Y., K. M. Nichols, K. I. Waller, J. E. Parsons and G. H. Thorgaard (2001): Association between DNA polymorphisms tightly linked to MHC class II genes and IHN virus resistance in backcrosses of rainbow and cutthroat trout. Aquaculture, 194, 283-289.
36. Perry G. M. L., R. Danzmann, M. M. Ferguson and J. P. Gibson (2001): Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss). Heredity, 86, 333-341.
37. Rasmuson, M. (1996): Review: Polygenes revisited. Hereditas, 125, 1-9.
38. Robison, B. D., P. A. Wheeler, K. and G. H. Thorgaard (1999): Variation in development rate among clonal lines of rainbow trout (Oncorhynchus mykiss). Aquaculture, 173, 131-141.
39. Robison, B. D., P. A. Wheeler, K. Sundin, P. Sikka and G. H. Thorgaard (2001): Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Hered., 92, 16-22.
40. Sakamoto, T. (1996): Study for the introduction of positional cloning method using DNA markers in fisheries science. Ph.D. thesis, Department of Aquatic Biosciences, Tokyo University of Fisheries, Japan. 106 p.
41. Sakamoto, T., N. Okamoto and Y. Ikeda (1994a): Dinucleotide repeat polymorphism in rainbow trout, FGT2. J. Anim. Sci., 72, 2765.
42. Sakamoto, T., N. Okamoto and Y. Ikeda (1994b): Dinucleotide repeat polymorphism in rainbow trout, FGT3. J. Anim. Sci., 72, 2766.
43. Sakamoto, T., N. Okamoto and Y. Ikeda (1994c): Dinucleotide repeat polymorphism in rainbow trout, FGT4. J. Anim. Sci., 72, 2767.
44. Sakamoto, T., N. Okamoto and Y. Ikeda (1994d): Dinucleotide repeat polymorphism in rainbow trout, FGT5. J. Anim. Sci., 72, 2768.
45. Sakamoto, T., N. Okamoto, Y. Ikeda, Y. Nakamura and T. Sato (1994e): Dinucleotide-repeat polymorphism in DNA of rainbow trout, Oncorhynchus mykiss, and its application in fisheries science. J. Fish Biol., 44, 1093-1096.
46. Sakamoto, T., R. G. Danzmann, N. Okamoto, M. M. Ferguson and P. E. Ihssen (1999): Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture, 173, 33-43.
47. Sakamoto, T., R. G. Danzmann, K. Gharbi, P. Howard, A. Ozaki, S. K. Khoo, R. A. Woram, N. Okamoto, M. M. Ferguson, L-E. Holm, R. Guyomard and B. Hoyheim (2000): A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics, 155, 1331-1345.
48. Sato, T., A. Tanigami, K. Yamakawa, F. Akiyama, F. Kasumi, G. Sakamoto and Y. Nakamura (1990): Allelotype of breast cancer. Cancer Res., 50, 7184-7189.
49. Scribner, K. T., J. R. Gust and R. L. Fields(1996): Isolation and characterization of novel microsatellite loci: cross species amplification and population genetics applications. Can. J. Fish. Aquat. Sci., 53, 833-841.
50. Smoker, W. W. (1986): Variability of embryo development rate, fry growth and disease susceptibility in hatchery stocks of chum salmon. Aquaculture, 57, 219-226.
51. Snoj, A., J. Pohar and P. Dovc (1997): Rapid communication: the first microsatellite DNA marker of marble trout, BFRO0001. J. Anim. Sci., 75, 1983.
52. Tanksley, S. D. (1993): Mapping polygenes. Ann. Rev. Genet., 27, 205-233.
53. Thorgaard, G. H., G. S. Bailey, D. Williams, D. R. Buhler, S. L. Kaattari, S. S. Ristow, J. D. Hansen, J. R. Winton, J. L. Bartholomew, J. J. Nagler, P. J. Walsh, M. M. Vijayan, R. H. Devlin, R. W. Hardy, K. E. Overturf, W. P. Young, B. D. Robison, C. Rexroad and Y. Palti (2002): Status and opportunity for genomics research with rainbow trout. Comp. Biochem. Physio. Part B, 133, 609-646.
54. Troyer, R. M., S. E. LaPatra and G. Kurath (2000): Genetic analyses reveal unusually high diversity of infectious haematopoietic necrosis virus in rainbow trout aquaculture. J. Gen. Virol., 81, 2823-2832.
55. Toojinda, T., E. Baird, A. Booth, L. Broers, P. Hayes, W. Powell, W. Thomas, H. Vivar, and G. Young (1998): Introgression of quantitative trait loci (QTLs) determining strip rust resistance in barley: an example of marker-assisted line development. Theor. Appl. Genet., 96, 123-131.
56. Yamamoto, S., I. Sanjyo, R. Sato, M. Kohara and H. Tahara (1991): Estimation of the heritability for resistance to infectious hematopoietic necrosis in rainbow trout. Nippon Suisan Gakkaishi, 57, 1519-1522 (in Japanese, with English abstract).
57. Young, W. P., P. A. Wheeler, V. H. Coryell, P. Keim and G. H. Thorgaard (1998): A detailed linkage map of rainbow trout produced using doubled haploids. Genetics, 148, 839-850.