-
1
-
-
0030928287
-
Represser induced site-specific binding of HU for transcriptional regulation
-
Aki, T. and Adhya, S. 1997. Represser induced site-specific binding of HU for transcriptional regulation. EMBO J. 16: 3666-3674.
-
(1997)
EMBO J.
, vol.16
, pp. 3666-3674
-
-
Aki, T.1
Adhya, S.2
-
2
-
-
0002058203
-
Ultraviolet resonance Raman studies of proteins and related model compounds
-
(eds. R.J.H. Clark and R.E. Hester). John Wiley and Sons, Ltd., New York
-
Austin, J.C., Jordan, T., and Spiro, T.G. 1993. Ultraviolet resonance Raman studies of proteins and related model compounds. In Biomolecular spectroscopy (eds. R.J.H. Clark and R.E. Hester), pp. 55-127. John Wiley and Sons, Ltd., New York.
-
(1993)
Biomolecular Spectroscopy
, pp. 55-127
-
-
Austin, J.C.1
Jordan, T.2
Spiro, T.G.3
-
3
-
-
0023846051
-
Structural details of an adenine tract that does not cause DNA to bend
-
Burkhoff, A.M. and Tullius, T.D. 1988. Structural details of an adenine tract that does not cause DNA to bend. Nature 331: 455-457.
-
(1988)
Nature
, vol.331
, pp. 455-457
-
-
Burkhoff, A.M.1
Tullius, T.D.2
-
4
-
-
0028901705
-
HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gaps
-
Castaing, B., Zelwer, C., Laval, J., and Boiteux, S. 1995. HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gaps. J. Biol. Chem. 270: 10291-10296.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 10291-10296
-
-
Castaing, B.1
Zelwer, C.2
Laval, J.3
Boiteux, S.4
-
5
-
-
0032478198
-
UV resonance Raman-selective amide vibrational enhancement: Quantitative methodology for determining protein secondary structure
-
Chi, Z., Chen, X.G., Holtz, J.S.W., and Asher, S.A. 1998. UV resonance Raman-selective amide vibrational enhancement: Quantitative methodology for determining protein secondary structure. Biochemistry 37: 2854-2864.
-
(1998)
Biochemistry
, vol.37
, pp. 2854-2864
-
-
Chi, Z.1
Chen, X.G.2
Holtz, J.S.W.3
Asher, S.A.4
-
6
-
-
0037048702
-
HU: Promoting or counteracting DNA compaction?
-
Dame, R.T. and Goosen, N. 2002. HU: Promoting or counteracting DNA compaction? FEBS Lett. 529: 151-156.
-
(2002)
FEBS Lett.
, vol.529
, pp. 151-156
-
-
Dame, R.T.1
Goosen, N.2
-
8
-
-
0001697863
-
Ultraviolet resonance Raman spectroscopy of DNA with 200-266-nm laser excitation
-
Fodor, S.P.A. and Spiro, T.G. 1986. Ultraviolet resonance Raman spectroscopy of DNA with 200-266-nm laser excitation. J. Am. Chem. Soc. 108: 3198-3205.
-
(1986)
J. Am. Chem. Soc.
, vol.108
, pp. 3198-3205
-
-
Fodor, S.P.A.1
Spiro, T.G.2
-
9
-
-
0000031644
-
Ultraviolet resonance Raman spectroscopy of the nucleotides with 266-, 240-, 218-, and 200-nm pulsed laser excitation
-
Fodor, S.P.A., Rava, R.P., Hays, T.R., and Spiro, T.G. 1985. Ultraviolet resonance Raman spectroscopy of the nucleotides with 266-, 240-, 218-, and 200-nm pulsed laser excitation. J. Am. Chem. Soc. 107: 1520-1529.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 1520-1529
-
-
Fodor, S.P.A.1
Rava, R.P.2
Hays, T.R.3
Spiro, T.G.4
-
10
-
-
0025274923
-
UV resonance Raman spectroscopy of nucleic acid duplexes containing A-U and A-T base pairs
-
Grygon, C.A. and Spiro, T.G. 1990. UV resonance Raman spectroscopy of nucleic acid duplexes containing A-U and A-T base pairs. Biopolymers 29: 707-715.
-
(1990)
Biopolymers
, vol.29
, pp. 707-715
-
-
Grygon, C.A.1
Spiro, T.G.2
-
11
-
-
0022527052
-
Sequence-directed curvature of DNA
-
Hagerman, PJ. 1986. Sequence-directed curvature of DNA. Nature 321: 449-450.
-
(1986)
Nature
, vol.321
, pp. 449-450
-
-
Hagerman, P.J.1
-
12
-
-
0001291195
-
Raman and ultraviolet resonance Raman spectra of proteins and related compounds
-
(eds. R.J.H. Clark and R.E. Hester). Wiley, New York
-
Harada, I. and Takeuchi, H. 1986. Raman and ultraviolet resonance Raman spectra of proteins and related compounds. In Spectroscopy of biological systems (eds. R.J.H. Clark and R.E. Hester), pp. 113-175. Wiley, New York.
-
(1986)
Spectroscopy of Biological Systems
, pp. 113-175
-
-
Harada, I.1
Takeuchi, H.2
-
14
-
-
0024297760
-
Tyrosine hydrogen-bonding and environmental effects in proteins probed by ultraviolet resonance Raman spectroscopy
-
Hildebrandt, P.G., Copeland, R.A., Spiro, T.G., Otlewski, J., Laskowski Jr., M., and Prendergast, F.G. 1988. Tyrosine hydrogen-bonding and environmental effects in proteins probed by ultraviolet resonance Raman spectroscopy. Biochemistry 27: 5426-5433.
-
(1988)
Biochemistry
, vol.27
, pp. 5426-5433
-
-
Hildebrandt, P.G.1
Copeland, R.A.2
Spiro, T.G.3
Otlewski, J.4
Laskowski Jr., M.5
Prendergast, F.G.6
-
15
-
-
0013673210
-
UV resonance Raman spectroscopy of the proline peptide bond
-
Jordan, T., Mukerji, I., Wang, Y., and Spiro, T.G. 1996. UV resonance Raman spectroscopy of the proline peptide bond. J. Mol. Struct 379: 51-64.
-
(1996)
J. Mol. Struct.
, vol.379
, pp. 51-64
-
-
Jordan, T.1
Mukerji, I.2
Wang, Y.3
Spiro, T.G.4
-
16
-
-
0034416406
-
The histone-like protein HU binds specifically to DNA recombination and repair intermediates
-
Kamashev, D. and Rouviere-Yaniv, J. 2000. The histone-like protein HU binds specifically to DNA recombination and repair intermediates. EMBO J. 19: 6527-6535.
-
(2000)
EMBO J.
, vol.19
, pp. 6527-6535
-
-
Kamashev, D.1
Rouviere-Yaniv, J.2
-
17
-
-
0033214062
-
The binding motif recognized by HU on both nicked and cruciform DNA
-
Kamashev, D., Balandina, A., and Rouviere-Yaniv, J. 1999. The binding motif recognized by HU on both nicked and cruciform DNA. EMBO J. 18: 5434-5444.
-
(1999)
EMBO J.
, vol.18
, pp. 5434-5444
-
-
Kamashev, D.1
Balandina, A.2
Rouviere-Yaniv, J.3
-
18
-
-
0033057518
-
Supercoiling-dependent site-specific binding of HU to naked Mu DNA
-
Kobryn, K., Lavoie, B.D., and Chaconas, G. 1999. Supercoiling-dependent site-specific binding of HU to naked Mu DNA. J. Mol. Biol. 289: 777-784.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 777-784
-
-
Kobryn, K.1
Lavoie, B.D.2
Chaconas, G.3
-
19
-
-
0027729660
-
Site-specific HU binding in the Mu transpososome: Conversion of a sequence-independent DNA-binding protein into a chemical nuclease
-
Lavoie, B.D. and Chaconas, G. 1993. Site-specific HU binding in the Mu transpososome: Conversion of a sequence-independent DNA-binding protein into a chemical nuclease. Genes & Dev. 7: 2510-2519.
-
(1993)
Genes & Dev.
, vol.7
, pp. 2510-2519
-
-
Lavoie, B.D.1
Chaconas, G.2
-
20
-
-
0029973105
-
Anatomy of a flexer-DNA complex inside a higher-order transposition intermediate
-
Lavoie, B.D., Shaw, G.S., Milkier, A., and Chaconas, G. 1996. Anatomy of a flexer-DNA complex inside a higher-order transposition intermediate. Cell 85: 761-771.
-
(1996)
Cell
, vol.85
, pp. 761-771
-
-
Lavoie, B.D.1
Shaw, G.S.2
Milkier, A.3
Chaconas, G.4
-
21
-
-
0141482089
-
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping
-
Lia, G., Bensimon, D., Croquette, V., Allemand, J.P., Dunlap, D., Lewis, D.E., Adhya, S., and Finzi, L. 2003. Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping. Proc. Natl. Acad. Sci. 100: 11373-11377.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 11373-11377
-
-
Lia, G.1
Bensimon, D.2
Croquette, V.3
Allemand, J.P.4
Dunlap, D.5
Lewis, D.E.6
Adhya, S.7
Finzi, L.8
-
22
-
-
0027327311
-
Genetic and biochemical analysis of the Integration Host Factor of Escherichia coli
-
Mengeritsky, G., Goldenberg, D., Mendelson, I., Giladi, H., and Oppenheim, A.B. 1993. Genetic and biochemical analysis of the Integration Host Factor of Escherichia coli. J. Mol. Biol. 231: 646-657.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 646-657
-
-
Mengeritsky, G.1
Goldenberg, D.2
Mendelson, I.3
Giladi, H.4
Oppenheim, A.B.5
-
23
-
-
0037039286
-
3 tract: Evidence for a premeking transition and three-centered H-bonds
-
3 tract: Evidence for a premeking transition and three-centered H-bonds. Biochemistry 41: 69-77.
-
(2002)
Biochemistry
, vol.41
, pp. 69-77
-
-
Mukerji, I.1
Williams, A.P.2
-
26
-
-
0032402302
-
A UV resonance Raman investigation of poly (rI): Evidence for cation dependent structural perturbations
-
Mukerji, L, Sokolov, L., and Mihailescu, M.-R. 1998. A UV resonance Raman investigation of poly (rI): Evidence for cation dependent structural perturbations. Biopolymers 46: 475-487.
-
(1998)
Biopolymers
, vol.46
, pp. 475-487
-
-
Mukerji, L.1
Sokolov, L.2
Mihailescu, M.-R.3
-
27
-
-
0034655961
-
Nonsequence-specific DNA recognition: A structural perspective
-
Murphy, F.V. and Churchill, M.E.A. 2000. Nonsequence-specific DNA recognition: A structural perspective. Structure 8: R83-R89.
-
(2000)
Structure
, vol.8
-
-
Murphy, F.V.1
Churchill, M.E.A.2
-
28
-
-
0028953032
-
Raman spectroscopy of DNA and proteins
-
Peticolas, W.L. 1995. Raman spectroscopy of DNA and proteins. Methods Enzymol 246: 389-416.
-
(1995)
Methods Enzymol.
, vol.246
, pp. 389-416
-
-
Peticolas, W.L.1
-
29
-
-
0033515646
-
Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA
-
Pinson, V., Takahashi, M., and Rouviere-Yaniv, J. 1999. Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA. J. Mol. Biol. 287: 485-497.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 485-497
-
-
Pinson, V.1
Takahashi, M.2
Rouviere-Yaniv, J.3
-
30
-
-
0031052180
-
Making DNA do a U-turn: IHF and related proteins
-
Rice, P.A. 1997. Making DNA do a U-turn: IHF and related proteins. Curr. Opin. Struct. Biol. 1: 86-93.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 86-93
-
-
Rice, P.A.1
-
31
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
-
Rice, P.A., Yang, S.-w., Mizuuchi, K., and Nash, H.A. 1996. Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn. Cell 87: 1295-1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.-W.2
Mizuuchi, K.3
Nash, H.A.4
-
33
-
-
0343794843
-
Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli
-
Rouviere-Yaniv, J. and Gros, F. 1975. Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli. Proc. Nat. Acad. Sci. 72: 3428-3432.
-
(1975)
Proc. Nat. Acad. Sci.
, vol.72
, pp. 3428-3432
-
-
Rouviere-Yaniv, J.1
Gros, F.2
-
34
-
-
0037378336
-
Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy
-
Serban, D., Arcineigas, S.F., Vorgias, C.E., and Thomas Jr., GJ. 2003a. Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy. Protein Sci. 12: 861-870.
-
(2003)
Protein Sci.
, vol.12
, pp. 861-870
-
-
Serban, D.1
Arcineigas, S.F.2
Vorgias, C.E.3
Thomas Jr., G.J.4
-
35
-
-
0038070264
-
HU protein employs similar mechanisms of minor-groove recognition in binding to different B-DNA sites: Demonstration by Raman spectroscopy
-
Serban, D., Benevides, J.M., and Thomas Jr., GJ. 2003b. HU protein employs similar mechanisms of minor-groove recognition in binding to different B-DNA sites: Demonstration by Raman spectroscopy. Biochemistry 42: 7390-7399.
-
(2003)
Biochemistry
, vol.42
, pp. 7390-7399
-
-
Serban, D.1
Benevides, J.M.2
Thomas Jr., G.J.3
-
36
-
-
0034319649
-
Structure of sickle cell hemoglobin fibers probed with UV resonance Raman spectroscopy
-
Sokolov, L. and Mukerji, I. 2000. Structure of sickle cell hemoglobin fibers probed with UV resonance Raman spectroscopy. J. Phys. Chem. 104: 10835-10844.
-
(2000)
J. Phys. Chem.
, vol.104
, pp. 10835-10844
-
-
Sokolov, L.1
Mukerji, I.2
-
37
-
-
2042470468
-
Nucleic acid structure investigated by UV resonance Raman spectroscopy: Protonation effects and A-tract structure
-
Sokolov, L., Wojtuszewski, K., Tsukroff, E., and Mukerji, I. 2000. Nucleic acid structure investigated by UV resonance Raman spectroscopy: Protonation effects and A-tract structure. J. Biomol. Struct. Dyn. 327-334.
-
(2000)
J. Biomol. Struct. Dyn.
, pp. 327-334
-
-
Sokolov, L.1
Wojtuszewski, K.2
Tsukroff, E.3
Mukerji, I.4
-
38
-
-
0041312645
-
Flexible DNA bending in HU-DNA cocrystal structures
-
Swinger, K.K., Lemberg, K.M., Zhang, Y., and Rice, P.A. 2003. Flexible DNA bending in HU-DNA cocrystal structures. EMBO J. 22: 3749-3760.
-
(2003)
EMBO J.
, vol.22
, pp. 3749-3760
-
-
Swinger, K.K.1
Lemberg, K.M.2
Zhang, Y.3
Rice, P.A.4
-
39
-
-
84988202078
-
Ultraviolet resonance Raman spectroscopy of X-proline bonds: A new marker band of hydrogen bonding at the imide C = O site
-
Takeuchi, H. and Harada, I. 1990. Ultraviolet resonance Raman spectroscopy of X-proline bonds: A new marker band of hydrogen bonding at the imide C = O site. J. Raman Spectrosc. 21: 509-515.
-
(1990)
J. Raman Spectrosc.
, vol.21
, pp. 509-515
-
-
Takeuchi, H.1
Harada, I.2
-
40
-
-
0021286693
-
3-Å resolution structure of a protein with histone-like properties in prokaryotes
-
Tanaka, I., Appelt, K., Dijk, J., White, S.W., and Wilson, K.S. 1984. 3-Å resolution structure of a protein with histone-like properties in prokaryotes. Nature 310: 376-381.
-
(1984)
Nature
, vol.310
, pp. 376-381
-
-
Tanaka, I.1
Appelt, K.2
Dijk, J.3
White, S.W.4
Wilson, K.S.5
-
41
-
-
0032986173
-
Raman spectroscopy of protein and nucleic acid assemblies
-
Thomas Jr., G.J. 1999. Raman spectroscopy of protein and nucleic acid assemblies. Anna. Rev. Biophys. Biomol. Struct. 28: 1-27.
-
(1999)
Anna. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 1-27
-
-
Thomas Jr., G.J.1
-
42
-
-
0001854341
-
Raman spectroscopy of nucleic acids and their complexes
-
Thomas Jr., G.J. and Tsuboi, M. 1993. Raman spectroscopy of nucleic acids and their complexes. Adv. Biophys. Chem. 3: 1-70.
-
(1993)
Adv. Biophys. Chem.
, vol.3
, pp. 1-70
-
-
Thomas Jr., G.J.1
Tsuboi, M.2
-
43
-
-
0002595194
-
Ultraviolet resonance Raman spectra of adenine, uracil and thymine derivatives in several solvents. Correlation between band frequencies and hydrogen-bonding states of the nucleic acid bases
-
Toyama, A., Takeuchi, H., and Harada, I. 1991. Ultraviolet resonance Raman spectra of adenine, uracil and thymine derivatives in several solvents. Correlation between band frequencies and hydrogen-bonding states of the nucleic acid bases. J. Mol Struct. 242: 87-98.
-
(1991)
J. Mol Struct.
, vol.242
, pp. 87-98
-
-
Toyama, A.1
Takeuchi, H.2
Harada, I.3
-
44
-
-
0027130066
-
Ultraviolet resonance Raman spectra of ribosyl C(1′)-deuterated purine nucleosides: Evidence of vibrational coupling between purine and ribose rings
-
Toyama. A., Takino, Y., Takeuchi, H., and Harada, I. 1993. Ultraviolet resonance Raman spectra of ribosyl C(1′)-deuterated purine nucleosides: Evidence of vibrational coupling between purine and ribose rings. J. Am. Chem. Soc. 115: 11092-11098.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 11092-11098
-
-
Toyama, A.1
Takino, Y.2
Takeuchi, H.3
Harada, I.4
-
45
-
-
0004237837
-
DNA-protein interactions: The three-dimensional architecture of DNA-protein complexes
-
Chapman & Hall, London
-
Travers, A. 1993. DNA-protein interactions: The three-dimensional architecture of DNA-protein complexes. In DNA-protein interactions, pp. 28-51. Chapman & Hall, London.
-
(1993)
DNA-protein Interactions
, pp. 28-51
-
-
Travers, A.1
-
46
-
-
0001149822
-
Raman scattering tensors in thymine molecule from an ab initio MO calculation
-
Tsuboi, M., Kumakura, A., Aida, M., Kaneko, M., Dupuis, M., Ushizawa, K., and Ueda, T. 1997. Raman scattering tensors in thymine molecule from an ab initio MO calculation. Spectrochim. Acta Part A 53: 409-419.
-
(1997)
Spectrochim. Acta Part A
, vol.53
, pp. 409-419
-
-
Tsuboi, M.1
Kumakura, A.2
Aida, M.3
Kaneko, M.4
Dupuis, M.5
Ushizawa, K.6
Ueda, T.7
-
47
-
-
0029585767
-
Solution structure of the HU protein from Bacillus stearothermophilus
-
Vis, H., Mariani, M., Vorgias, C.E., Wilson, K.S., Kaptein, R., and Boelens, R. 1995. Solution structure of the HU protein from Bacillus stearothermophilus. J. Mol Biol. 254: 692-703.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 692-703
-
-
Vis, H.1
Mariani, M.2
Vorgias, C.E.3
Wilson, K.S.4
Kaptein, R.5
Boelens, R.6
-
49
-
-
0024337809
-
A protein structural motif that bends DNA
-
White, S.W., Appell, K., Wilson, K.S., and Tanaka, I. 1989. A protein structural motif that bends DNA. Proteins 5: 281-288.
-
(1989)
Proteins
, vol.5
, pp. 281-288
-
-
White, S.W.1
Appell, K.2
Wilson, K.S.3
Tanaka, I.4
-
50
-
-
0033119773
-
The high-resolution structure of DNA-binding protein HU from B. stearothermophilus
-
White, S.W., Wilson, K.S., Appelt, K., and Tanaka, I. 1999. The high-resolution structure of DNA-binding protein HU from B. stearothermophilus. Acta Crystallogr. D 55: 801-809.
-
(1999)
Acta Crystallogr. D
, vol.55
, pp. 801-809
-
-
White, S.W.1
Wilson, K.S.2
Appelt, K.3
Tanaka, I.4
-
51
-
-
0037452946
-
HU binding to bent DNA: A fluorescence anisotropy and resonance energy transfer study
-
Wojtuszewski, K. and Mukerji, I. 2003. HU binding to bent DNA: A fluorescence anisotropy and resonance energy transfer study. Biochemistry 42: 3096-3104.
-
(2003)
Biochemistry
, vol.42
, pp. 3096-3104
-
-
Wojtuszewski, K.1
Mukerji, I.2
-
52
-
-
0035957055
-
HU binding to DNA: Evidence for multiple complexes and DNA bending
-
Wojtuszewski, K., Hawkins, M.E., Cole, J.L., and Mukerji, I. 2001. HU binding to DNA: Evidence for multiple complexes and DNA bending. Biochemistry 40: 2588-2598.
-
(2001)
Biochemistry
, vol.40
, pp. 2588-2598
-
-
Wojtuszewski, K.1
Hawkins, M.E.2
Cole, J.L.3
Mukerji, I.4
-
53
-
-
0032495288
-
Vibrational spectra and experimental assignments of thymine and nine of its isotopomers
-
Zhang, S.L., Michaelian, K.H., and Loppnow, G.R. 1998. Vibrational spectra and experimental assignments of thymine and nine of its isotopomers. J. Phys. Chem. A 102: 461-470.
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 461-470
-
-
Zhang, S.L.1
Michaelian, K.H.2
Loppnow, G.R.3
-
54
-
-
0029077231
-
Participation of the flank regions of the Integration Host Factor protein in the specificity and stability of DNA binding
-
Zulianello, L., van Ulsen, P., van de Putte, P., and Goosen, N. 1995. Participation of the flank regions of the Integration Host Factor protein in the specificity and stability of DNA binding. J. Biol. Chem. 270: 17902-17907.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 17902-17907
-
-
Zulianello, L.1
Van Ulsen, P.2
Van De Putte, P.3
Goosen, N.4
|