Identification of Mycobacterium tuberculosis by PCR-linked reverse hybridization using specific rpoB oligonucleotide probes

Journal of Microbiological Methods

Volumn 59, Issue 1, 2004, Pages 71-79

  Hong, Seong Karp ^a   Kim, Bum Joon ^a   Yun, Yeo Jun ^a   Lee, Keun Hwa ^a   Kim, Eui Chong ^a   Park, Eun Mi ^a   Park, Young Gil ^b   Bai, Gil Han ^b   Kook, Yoon Hoh ^a  

^a Seoul National University College of Medicine   (South Korea)

^b Korean Institute of Tuberculosis   (South Korea)

Author keywords

Mycobacterium tuberculosis; PCR linked reverse hybridization; Specific rpoB oligonucleotide probes

Indexed keywords

RIFAMPICIN; RNA POLYMERASE BETA SUBUNIT;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA HYBRIDIZATION; GENE SEQUENCE; MICROTITER PLATE ASSAY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; OLIGONUCLEOTIDE PROBE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS;

DNA PROBES; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; HUMANS; MYCOBACTERIUM TUBERCULOSIS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; TUBERCULOSIS;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS;

EID: 4344596317     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2004.06.004     Document Type: Article

References (19)

1. Agger E.M., Andersen P. A novel TB vaccine; towards a strategy based on our understanding of BCG failure. Vaccine. 21:2002;7-14
2. De Beenhouwer H., Lhiang Z., Jannes G., Mijs W., Machtelinckx L., Rossau R., Traore H., Portaels F. Rapid detection of rifampicin resistance in sputum and biopsy specimens from tuberculosis patients by PCR and line probe assay. Tuber. Lung Dis. 76:1995;425-430
3. Fukushima M., Kakinuma K., Hayashi H., Nagai H., Ito K., Kawaguchi R. Detection and identification of Mycobacterium species isolates by DNA microarray. J. Clin. Microbiol. 41:2003;2605-2615
4. Hunt J.M., Roberts G.D., Stockman L., Felmlee T.A., Persing D.H. Detection of a genetic locus encoding resistance to rifampin in mycobacterial cultures and in clinical specimens. Diagn. Microbiol. Infect. Dis. 18:1994;219-227
5. Ichiyama S., Iinuma Y., Tawada Y., Yamori S., Hasegawa Y., Shimokata K., Nakashima N. Evaluation of Gen-Probe Amplified Mycobacterium tuberculosis Direct Test and Roche PCR-microwell plate hybridization method (AMPLICOR MYCOBACTERIUM) for direct detection of mycobacteria. J. Clin. Microbiol. 34:1996;130-133
6. Kawai S., Maekawajiri S., Yamane A. A simple method of detecting amplified DNA with immobilized probes on microtiter well. Anal. Biochem. 209:1993;63-69
7. Kim B.J., Lee S.H., Lyu M.A., Kim S.J., Bae G.H., Kim S.J., Chae G.T., Kim E.C., Cha C.Y., Kook Y.H. Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene(rpoB). J. Clin. Microbiol. 37:1999;1714-1720
8. Kochi A. The global tuberculosis situation and the new control strategy of the World Health Organization. Tubercle. 72:1991;1-6
9. Levin M.E., Hatfull G.F. Mycobacterium smegmatis RNA polymerase: DNA supercoiling, action of rifampicin and mechanism of rifampicin resistance. Mol. Microbiol. 8:1993;277-285
10. Miller N., Cleary T., Kraus G., Young A.K., Spruill G., Hnatyszyn H.J. Rapid and specific detection of Mycobacterium tuberculosis from acid-fast bacillus smear-positive respiratory specimens and BacT/ALERT MP culture bottles by using fluorogenic probes and real-time PCR. J. Clin. Microbiol. 40:2002;4143-4147
11. Murray P.R., Baron E.J., Pfaller M.A., Tenover F.C., Yolken R.H. Frederick S.N., Metchock B. Manual of Clinical Microbiology. 6th ed.:1995;400-437 ASM Press, Washington, DC
12. Portaels F., Aguiar J., Fissette K., Fonteyne P.A., De Beenhouwer H., De Rijk P., Guedenon A., Lemans R., Steunou C., Zinsou C., Dumonceau J.M., Meyers W.M. Direct detection and identification of Mycobacterium ulcerans in clinical specimens by PCR and oligonucleotide-specific capture plate hybridization. J. Clin. Microbiol. 35:1997;1097-1100
13. Rossau R., Traore H., De Beenhouwer H., Mijs W., Jannes G., De Rijk P., Portaels F. Evaluation of the INNO-LiPA Rif. TB assay, a reverse hybridization assay for the simultaneous detection of Mycobacterium tuberculosis complex and its resistance to rifampin. Antimicrob. Agents Chemother. 41:1997;2093-2098
14. Shinnick T.M., Good R.C. Mycobacterial taxonomy. Eur. J. Microbiol. Infect. Dis. 13:1994;884-901
15. Stender H., Lund K., Petersen K.H., Rasmussen O.F., Hongmanee P., Miorner H., Godtfredsen S.E. Fluorescence in situ hybridization assay using peptide nucleic acid probes for differentiation between tuberculous and nontuberculous Mycobacterium species in smears of Mycobacterium cultures. J. Clin. Microbiol. 37:1999;2760-2765
16. Suffys P.N., da Silva Rocha A., de Oliveira M., Dias Campos C.E., Werneck Barreto A.M., Portaels F., Rigouts L., Wouters G., Jannes G., Van Reybroeck G., MIJS W., Vanderborght B. Rapid identification of mycobacteria to the species level using INNO-LiPA mycobacteria, a reverse hybridization. J. Clin. Microbiol. 39:2001;4477-4482
17. Telenti A., Imboden P., Marchesi F., Lowrie D., Cole S., Colston M.J., Matter L., Schopfer K., Bodmer T. Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis. Lancet. 341:1993;647-650
18. Tevere V.J., Hewitt P.L., Dare A., Hocknell P., Keen A., Spadora J.P., Young K.K.Y. Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe. J. Clin. Microbiol. 34:1996;918-923
19. Tortoli E., Mariottini A., Mazzarelli G. Evaluation of INNO-LiPA MYCOBACTERIA v2: improved reverse hybridization multiple DNA probe assay for mycobacterial identification. J. Clin. Microbiol. 41:2003;4418-4420