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Volumn 9, Issue SUPPL. 2, 2008, Pages

Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells

Author keywords

[No Author keywords available]

Indexed keywords

DIFFERENTIALLY EXPRESSED GENE; GENE EXPRESSION ANALYSIS; HUMAN BREAST CANCER CELLS; MICROARRAY EXPERIMENTS; NORMALIZATION ALGORITHMS; SIMULTANEOUS MEASUREMENT; TEMPORAL RELATIONSHIPS; TIME-COURSE ANALYSIS;

EID: 43349103452     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-S2-S12     Document Type: Article
Times cited : (25)

References (37)
  • 6
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 33173
    • Tusher V Tibshirani R Chu C Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci U S A 2001, 98:5116-5121 33173 11309499
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.1    Tibshirani, R.2    Chu, C.3
  • 7
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • 11382364
    • Kerr MK Martin M Churchill GA Analysis of variance for gene expression microarray data J Comput Biol 2000, 7:819-837 11382364
    • (2000) J Comput Biol , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 8
    • 0037433769 scopus 로고    scopus 로고
    • Statistical tests for identifying differentially expressed genes in time course microarray experiments
    • 12691981
    • Park T Yi SG Lee S Lee SY Yoo DH Ahn JI Lee YS Statistical tests for identifying differentially expressed genes in time course microarray experiments Bioinformatics 2003, 19:694-703 12691981
    • (2003) Bioinformatics , vol.19 , pp. 694-703
    • Park, T.1    Yi, S.G.2    Lee, S.3    Lee, S.Y.4    Yoo, D.H.5    Ahn, J.I.6    Lee, Y.S.7
  • 9
    • 33646147811 scopus 로고    scopus 로고
    • MaSigPro: A method to identify significantly differential expression profiles in time-course microarray-experiments
    • 16481333
    • Conesa A Nueda MJ Ferrer A Talon M MaSigPro: A method to identify significantly differential expression profiles in time-course microarray-experiments Bioinformatics 2006, 22:1096-1102 16481333
    • (2006) Bioinformatics , vol.22 , pp. 1096-1102
    • Conesa, A.1    Nueda, M.J.2    Ferrer, A.3    Talon, M.4
  • 11
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, Springer
    • Smyth GK Limma: Linear models for microarray data Bioinformatics and Computational Biology Solutions using R and Bioconductor Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, Springer 2005, 397-420
    • (2005) Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 12
    • 0036855903 scopus 로고    scopus 로고
    • Statistical analysis of a small set of time-ordered gene expression data using linear splines
    • 12424119
    • De Hoon MJL Imoto S Miyano S Statistical analysis of a small set of time-ordered gene expression data using linear splines Bioinformatics 2002, 18:1477-1485 12424119
    • (2002) Bioinformatics , vol.18 , pp. 1477-1485
    • De Hoon, M.J.L.1    Imoto, S.2    Miyano, S.3
  • 13
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time series gene expression data
    • 15130923
    • Bar-Joseph Z Analyzing time series gene expression data Bioinformatics 2004, 20:2493-2503 15130923
    • (2004) Bioinformatics , vol.20 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 15
    • 32544433476 scopus 로고    scopus 로고
    • EDGE: Extraction and analysis of differential gene expression
    • 16357033
    • Leek J Monsen E Dabney A Storey J EDGE: Extraction and analysis of differential gene expression Bioinformatics 2006, 22:507-508 16357033
    • (2006) Bioinformatics , vol.22 , pp. 507-508
    • Leek, J.1    Monsen, E.2    Dabney, A.3    Storey, J.4
  • 16
    • 33750414249 scopus 로고    scopus 로고
    • A multivariate empirical Bayes statistic for replicated microarray time course data
    • Tai YC Speed TP A multivariate empirical Bayes statistic for replicated microarray time course data Ann Statist 2006, 34:2387-2412
    • (2006) Ann Statist , vol.34 , pp. 2387-2412
    • Tai, Y.C.1    Speed, T.P.2
  • 18
    • 34548752486 scopus 로고    scopus 로고
    • A Bayesian Approach to Estimation and Testing in Time-course Microarray Experiments
    • Article24 17910530
    • Angelini C De Canditiis D Mutarelli M Pensky M A Bayesian Approach to Estimation and Testing in Time-course Microarray Experiments Stat Appl Genet Mol Biol 2007, 6(Article24) 17910530
    • (2007) Stat Appl Genet Mol Biol , vol.6
    • Angelini, C.1    De Canditiis, D.2    Mutarelli, M.3    Pensky, M.4
  • 19
    • 46749085676 scopus 로고    scopus 로고
    • BATS: A Bayesian user-friendly software for Analyzing Time Series microarray experiments
    • IAC-CNR 331-07
    • Angelini C Cutillo L De Canditiis D Mutarelli M Pensky M BATS: A Bayesian user-friendly software for Analyzing Time Series microarray experiments Rapp. Tech. IAC-CNR 331-07 2007.
    • (2007) Rapp. Tech.
    • Angelini, C.1    Cutillo, L.2    De Canditiis, D.3    Mutarelli, M.4    Pensky, M.5
  • 21
    • 84874647259 scopus 로고    scopus 로고
    • A Handbook of Statistical Analyses Using R
    • In [ISBN 1-584-88539-4]
    • Everitt B Hothorn T A Handbook of Statistical Analyses Using R In Genome Res. Boca Raton, FL: Chapman & Hall/CRC 2006 [http://cran.r-project.org/web/packages/HSAUR/index.html]. [ISBN 1-584-88539-4].
    • (2006) Genome Res. Boca Raton, FL: Chapman & Hall/CRC
    • Everitt, B.1    Hothorn, T.2
  • 22
    • 84874647949 scopus 로고    scopus 로고
    • Illumina Inc USA 2004 2005 [Doc. 11179632 Rev. B]
    • Illumina Inc BeadStudio User Guide San Diego, USA 2004 2005 [http://www.illumina.com]. [Doc. 11179632 Rev. B].
    • (2005) BeadStudio User Guide San Diego
  • 24
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on bias and variance
    • 12538238
    • Bolstad BM Irizarry RA Astrand M Speed TP A comparison of normalization methods for high density oligonucleotide array data based on bias and variance Bioinformatics 2003, 19:185-193 12538238
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 25
    • 27144486151 scopus 로고    scopus 로고
    • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
    • 1258170 16237126
    • Barnes M Freudenberg J Thompson S Aronow B Pavlidis P Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms Nucleic Acids Res 2005, 33:5914-5923 1258170 16237126
    • (2005) Nucleic Acids Res , vol.33 , pp. 5914-5923
    • Barnes, M.1    Freudenberg, J.2    Thompson, S.3    Aronow, B.4    Pavlidis, P.5
  • 26
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • 14960456
    • Gautier L Cope L Bolstad BM Irizarry RA affy-analysis of Affymetrix GeneChip data at the probe level Bioinformatics 2004, 20:307-315 14960456
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 28
    • 11244346557 scopus 로고    scopus 로고
    • Variance Stabilization Applied to Microarray Data Calibration and to the Quantification of Differential Expression
    • 12169536
    • Huber W von Heydebreck A Sultmann H Poustka A Vingron M Variance Stabilization Applied to Microarray Data Calibration and to the Quantification of Differential Expression Bioinformatics 2002, 18(Suppl 1):S96-S104 12169536
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    von Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 30
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 170937 12883005
    • Storey J Tibshirani R Statistical significance for genomewide studies Proc Natl Acad Sci U S A 2003, 100:9440-9445 170937 12883005
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.1    Tibshirani, R.2
  • 32
    • 33847346806 scopus 로고    scopus 로고
    • Statistical analysis of microarray time course data
    • Taylor and Francis Edited by Nuber U [ISBN 9780415358668]
    • Tai Y Speed T Statistical analysis of microarray time course data DNA Microarrays Taylor and Francis Edited by Nuber U 2005 [ISBN 9780415358668]
    • (2005) DNA Microarrays
    • Tai, Y.1    Speed, T.2
  • 35
    • 33645507298 scopus 로고    scopus 로고
    • A quantitative study of gene regulation involved in the Immune response of Anopheline Mosquitoes: An application of Bayesian hierarchical clustering of curves
    • Heard N Holmes C Stephen D A quantitative study of gene regulation involved in the Immune response of Anopheline Mosquitoes: An application of Bayesian hierarchical clustering of curves J. Amer. Stat. Soc. 2006, 101:18-29
    • (2006) J. Amer. Stat. Soc. , vol.101 , pp. 18-29
    • Heard, N.1    Holmes, C.2    Stephen, D.3


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