Beals smoothing revisited

Oecologia

Volumn 156, Issue 3, 2008, Pages 657-669

  De Cáceres, Miquel ^a,b   Legendre, Pierre ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b UNIVERSITY OF BARCELONA   (Spain)

Author keywords

Barro Colorado Island; Beals smoothing; Binary data; Community ecology; Randomization model

Indexed keywords

COMMUNITY ECOLOGY; COMMUNITY STRUCTURE; DATA SET; MULTIVARIATE ANALYSIS; SMOOTHING; STATISTICAL ANALYSIS;

ARTICLE; BIODIVERSITY; COMPUTER SIMULATION; ECOLOGY; METHODOLOGY; REPRODUCIBILITY;

BIODIVERSITY; COMPUTER SIMULATION; ECOLOGY; REPRODUCIBILITY OF RESULTS;

EID: 43349092920     PISSN: 00298549     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00442-008-1017-y     Document Type: Article

References (38)

1. Austin MP (1976) On non-linear species response models in ordination. Vegetatio 33:33-41
2. Beals EW (1984) Bray-Curtis ordination: an effective strategy for analysis of multivariate ecological data. Adv Ecol Res 14:1-55
3. Beauchamp VB, Stromberg JC, Stutz JC (2006) Arbuscular mycorrhizal fungi associated with Populus-Salix stands in a semiarid riparian ecosystem. New Phytol 170:369
4. Bouxin G (2005) Ginkgo, a multivariate analysis package. J Veg Sci 16:355-359
5. Brisse H, Grandjouan G, Hoff M, de Ruffray P (1980) Utilisation d'un critère statistique de l'écologie en phytosociologie-exemple des forêts alluviales en Alsace. Coll Phytosociol 9:543-590
6. Brodeur RD, Fisher JP, Emmett RL, Morgan CA, Casillas E (2005) Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions. Mar Ecol Prog Ser 298:41-57
7. De Cáceres M, Oliva F, Font X, Vives S (2007) GINKGO, a program for non-standard multivariate fuzzy analysis. Adv Fuzzy Sets Syst 2:41-56
8. Ellyson WJT, Sillett SC (2003) Epiphyte Communities on Sitka Spruce in an old-growth Redwood Forest. Bryologist 106:197-211
9. Ewald J (2002) A probabilistic approach to estimating species pools from large compositional matrices. J Veg Sci 13:191-198
10. Fortin MJ, Dale MRT (2005) Spatial analysis: a guide for ecologists. Cambridge University Press, Cambridge
11. Gotelli NJ (2000) Null model analysis of species co-occurrence patterns. Ecology 81:2606-2621
12. Harms KE, Condit R, Hubbell SP, Foster RB (2001) Habitat associations of trees and shrubs in a 50-ha neotropical forest plot. J Ecol 89:947-959
13. Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Stat 6:1979
14. Holz I, Gradstein RS (2005) Cryptogamic epiphytes in primary and recovering upper montane oak forests of Costa Rica-species richness, community composition and ecology. Plant Ecol 178:89-109
15. Hope ACA (1968) A simplified Monte Carlo test procedure. J R Stat Soc B 50:35-45
16. Hubbell SP, Condit R, Foster RB (2005) Barro colorado forest census plot data. Available at http://ctfs.si/edu/datasets/bci
17. Hutchinson GE (1957) Concluding remarks. Cold Spring Harb Symp Quant Biol 22:415-427
18. Joy MK, Death RG (2000) Development and application of a predictive model of riverine fish community assemblages in the Taranaki region of the North Island, New Zealand. NZ J Mar Freshw Res 34:241-252
19. Kimball S, Wilson P, Crowther J (2004) Local ecology and geographic ranges of plants in the Bishop Creek watershed of the eastern Sierra Nevada, California, USA. J Biogeogr 31:1637-1657
20. Lee P (2004) The impact of burn intensity from wildfires on seed and vegetative banks, and emergent understory in aspen-dominated boreal forests. Can J Bot/Rev Can Bot 82:1468-1480
21. Legendre P (2005) Species associations: the Kendall coefficient of concordance revisited. J Agric Biol Environ Stat 10:226-245
22. Legendre P, Legendre L (1998) Numerical ecology, 2nd English edn. Elsevier, Amsterdam
23. Marra JL, Edmonds RL (2005) Soil arthropod responses to different patch types in a mixed-conifer forest of the Sierra Nevada. For Sci 51:255
24. McCune B (1994) Improving community analysis with the Beals smoothing function. Ecoscience 1:82-86
25. McCune B, Grace JB (2002) Analysis of ecological communities. MjM Software Design, Gleneden Beach
26. McCune B, Mefford MJ (1999) PC-ORD. Multivariate analysis of ecological data, Version 4. MjM Software Design, Gleneden Beach
27. Minchin PR (1987) Simulation of multidimensional community patterns towards a comprehensive model. Vegetatio 71:145-156
28. Münzbergová Z, Herben T (2004) Identification of suitable unoccupied habitats in metapopulation studies using co-occurrence of species. Oikos 105:408-414
29. North M, Oakley B, Fiegener R, Gray A, Barbour M (2005) Influence of light and soil moisture on Sierran mixed-conifer understory communities. Plant Ecol 177:13-24
30. Oksanen J, Kindt R, Legendre P, O'Hara B, Simpson GL, Stevens MHH (2008) Vegan: community ecology package. R package version 1.11-0. http://cran.r- project.org/, http://vegan.r-forge.r-project.org/
31. Peres-Neto PR, Olden JD, Jackson DA (2001) Environmentally constrained null models: site suitability as occupancy criterion. Oikos 93:110
32. R Development Core Team (2007) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at http://www.R-project.org
33. Roberts DW, Wight D (1988) Plant community distribution and dynamics in Bryce Canyon National Park. United States Department of Interior National Park Service
34. Roberts DW (2006) LABDSV: Laboratory for Dynamic Synthetic Vegephenomenology. R package version 1.2-2. Available at http://cran.r-project. org/
35. Schnittler M, Unterseher M, Tesmer J (2006) Species richness and ecological characterization of myxomycetes and myxomycete-like organisms in the canopy of a temperate deciduous forest. Mycologia 98:223
36. Sidak Z (1967) Rectangular confidence regions for the means of multivariate normal distributions. J Am Stat Assoc 62:626-633
37. Swan JMA (1970) An examination of some ordination problems by use of simulated vegetational data. Ecology 51:89-102
38. Whitehouse HE, Bayley SE (2005) Vegetation patterns and biodiversity of peatland plant communities surrounding mid-boreal wetland ponds in Alberta, Canada. Can J Bot 83:621-637