Comparison of protein and mRNA expression evolution in humans and chimpanzees

PLoS ONE

Volumn 2, Issue 2, 2007, Pages

  Fu, Ning ^a   Drinnenberg, Ines ^b   Kelso, Janet ^b   Wu, Jia Rui ^a   Pääbo, Svante ^b   Zeng, Rong ^a   Khaitovich, Philipp ^a,b  

^a Shanghai Jiao Tong University Affiliated Sixth People s Hospital   (China)

^b MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ANIMAL TISSUE; ARTICLE; CHIMPANZEE; CONTROLLED STUDY; EVOLUTION; GENE EXPRESSION; GENETIC ANALYSIS; HUMAN; HUMAN TISSUE; HUMAN VERSUS ANIMAL COMPARISON; MICROARRAY ANALYSIS; NONHUMAN; PROTEIN ANALYSIS; PROTEIN EXPRESSION; SPECIES DIFFERENCE; ADULT; ANIMAL; COMPARATIVE STUDY; DNA MICROARRAY; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; LIVER; MALE; METABOLISM; MOLECULAR EVOLUTION; PAN TROGLODYTES; PROTEIN SYNTHESIS; REPRODUCIBILITY;

MAMMALIA; PAN;

ANIMALS; EVOLUTION, MOLECULAR; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HUMANS; LIVER; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PAN TROGLODYTES; PROTEIN BIOSYNTHESIS; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER; SPECIES SPECIFICITY; TRANSCRIPTION, GENETIC; YOUNG ADULT;

EID: 43349090699     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0000216     Document Type: Article

References (17)

1. Preuss TM, Caceres M, Oldham MC, Geschwind DH (2004) Human brain evolution: insights from microarrays. Nat Rev Genet 5: 850-860.
2. Hack CJ (2004) Integrated transcriptome and proteome data: the challenges ahead. Brief Funct Genomic Proteomic 3: 212-219.
3. Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929-934.
4. Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, et al. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics 1: 323-333.
5. Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, et al. (2004) Integrated genomic and proteomic analyses of gene expression in Mammalian cells. Mol Cell Proteomics 3: 960-969.
6. Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, et al. (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3107-3112.
7. Cox B, Kislinger T, Emili A (2005) Integrating gene and protein expression data: pattern analysis and profile mining. Methods 35: 303-314.
8. Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730.
9. Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, et al. (2003) Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115: 629-640.
10. Mijalski T, Harder A, Halder T, Kersten M, Horsch M, et al. (2005) Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues. Proc Natl Acad Sci U S A 102: 8621-8626.
11. Kislinger T, Cox B, Kannan A, Chung C, Hu P, et al. (2006) Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell 125: 173-186.
12. Khaitovich P, Enard W, Lachmann M, Paabo S (2006) Evolution of primate gene expression. Nat Rev Genet 7: 693-702.
13. Consortium. CSaA (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
14. Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, et al. (2005) Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309: 1850-1854.
15. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
16. Jiang XS, Dai J, Sheng QH, Zhang L, Xia QC, et al. (2005) A comparative proteomic strategy for subcellular proteome research: ICAT approach coupled with bioinformatics prediction to ascertain rat liver mitochondrial proteins and indication of mitochondrial localization for catalase. Mol Cell Proteomics 4: 12-34.
17. Felsenstein J (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.