Differential gene expression during somatic embryogenesis

Plant Cell Monographs

Volumn 2, Issue , 2005, Pages 305-320

  Suprasanna, P ^a   Bapat, V A ^a  

^a BHABHA ATOMIC RESEARCH CENTRE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 43249113428     PISSN: 18611370     EISSN: 18611362     Source Type: Book Series    
DOI: 10.1007/7089_038     Document Type: Article

References (91)

1. Abel S, Theologis A (1996) Early genes and auxin action. Plant Physiol 111:9-17
2. Alexandrova KS, Conger BV (2002) Isolation of two somatic embryogenesis-related genes from orchardgrass (Dactylis glomemta). Plant Sci 162:301-307
3. Anil VS, Rao KS (2000) Calcium mediated signaling during sandalwood somatic embryogenesis. Role for exogenous calcium as second messenger. Plant Physiol 123:1301-1311
4. Anil VS, Harmon AC, Rao KS (2000) Spatio-temporal accumulation and activity of Calcium-dependent protein kinases during embryogenesis, seed development, and germination in sandalwood. Plant Physiol 122:1035-1043
5. Balestrazzi A, Toscano I, Bernacchia G, Luo M, Otte S, Carbonera D (1996) Cloning of a cDNA encoding DNA topoisomerase I in Daucus carota and expression analysis in relation to cell proliferation. Gene 183:183-190
6. Balestrazzi A, Bernacchia G, Pitto L, Luccarni G, Carbonera D (2001) Spatial expression of DNA topoisomerase I genes during cell proliferation in Daucus carota. Eur J Histochem 45:31-38
7. Baudino S, Hansen S, Brettschneider R, Hecht VF, Dresselhaus T, Lorz H, Dumas C, Rogowsky PM (2001) Molecular characterisation of two novel maize LRR receptor-like kinases, which belong to the SERK gene family. Planta 213:1-10
8. Bishop-Hurley SL, Gardner RC, Walter C (2003) Isolation and characterization of genes expressed during somatic embryo development in Pinus radiata. Plant Cell Tissue Organ Cult 74:267-281
9. Chugh A, Khurana P (2002) Gene expression during somatic embryogenesis - recent advances. Curr Sci 86:715-730
10. Coca MA, Almoguera C, Jordano J (1994) Expression of sunflower low-moelcular-weight heat-shock proteins during embryogenesis and persistence after germination: localization and possible functional implications. Plant Mol Biol 25:479-492
11. Cyr RJ, Bustos MM, Guiltinan MJ, Fosket DE (1987) Developmental modulation of tubulin protein and mRNA levels during somatic embryogenesis in cultured carrot cells. Planta 171:365-376
12. Daveletova S, Meszaros T, Miskolczi P, Obershall A, Torok K, Magyar Z, Dudits D, Deak M (2001) Auxin and heat shock activation of a novel member of the calmodulin like domain protein kinase gene family in cultured alfalfa cells. J Exp Bot 52:215-221
13. Dodeman VL, Ducreux G (1996) Total protein pattern expression during induction and development of carrot somatic embryos. Plant Sci 120:57-69
14. Dodeman VL, Ducreux G, Kreis M (1997) Zygotic embryogenesis versus somatic embryogenesis. J Exp Bot 48:1493-1509
15. Dodeman VL, Le Guilloux M, Ducreux G, de Vienne D (1998) Somatic and zygotic embryos of Daucus carota L. display different protein patterns until conversion to plants. Plant Cell Physiol 39:104-111
16. Dong J, Dunstan DI (2000) Expression of abundant mRNAs during somatic embryogenesis of white spruce. Planta 199:459-466
17. Dudits D, Bogre L, Gyorgyey J (1991) Molecular and cellular approaches to the analysis of plant embryo development from somatic cells in vitro. J Cell Sci 99:475-484
18. Dudits D, Gyorgyey J, Bogre L, Bako L (1995) Molecular biology of somatic embryogenesis. In: Thorpe TA (ed) In vitro embryogenesis in plants. Kluwer, Dordrecht, pp 267-308
19. Feher A, Pasternak TP, Dudits D (2003) Transition of somatic plant cells to an embryogenic state. Plant Cell Tissue Organ Cult 74:201-228
20. Figueroa FQ, Mendez-Zeel M, Teyer FS, Rojas-Herrera R, Loyola-Vargas VM (2002) Differential gene expression in embryogenic and non-embryogenic cell clusters from cell suspension cultures of Coffea arabica. J Plant Physiol 159:1267-1270
21. Fowler MR, Ong LM, Russinova E, Atanassov AI, Scott NW, Slater A, Eliott MC (1998) Early changes in gene expression during direct somatic embryogenesis in alfalfa revealed by RAP-PCR. J Exp Bot 49:249-253
22. Galland R, Randoux B, Vasseur J, Hilbert JL (2001) A glutathione S-transferase cDNA identified by mRNA differential display is upregulated during somatic embryogenesis in Cichorium. Biochim Biophys Acta 1522:212-216
23. Giroux RW, Pauls KP (1997) Characterization of somatic embryogenesis-related cDNAs from alfalfa (Medicago sativa L). Plant Mol Biol 33:393-404
24. Goldberg RB, Barker SJ, Perez-Grau L (1989) Regulation of gene expression during plant embryogenesis. Cell 56:149-160
25. Goldberg RB, de Paiva G, Yadegari R (1994) Plant embryogenesis: zygote to seed. Science 266:605-614
26. Guilfoyle TJ (1999) Biochemistry and Molecular Biology of Plant Hormones. In: Lib benga KR, Hall M, Hooykaas PJJ (eds) Biochemistry and molecular biology of plant hormones. Elsevier, Amsterdam, pp 423-459
27. Hagen G, Guilfoyle TJ (2002) Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol 49:373-385
28. Hagen G, Kleinschmidt A, Guilfoyle TJ (1984) Auxin-regulated gene expression in intact soybean hypocotyl and excised hypocotyl sections. Planta 162:147-153
29. Hagen G, Martin G, Li Y, Guilfoyle TJ (1991) Auxin-induced expression of the soybean GH3 promoter in transgenic tobacco plants. Plant Mol Biol 17:567-579
30. Hata S, Kouchi H, Suzuka I, Ishii T (1991) Isolation and characterization of cDNA clones for plant cyclins. EMBO J 10:2681-2688
31. Hecht V, Vielle-Calzada J-P, Hartog MV, Schmidt ED, Boutilier K, Grossnikaulus U, de Vries SC (2001) The Arabidopsis somatic embryogenesis receptor kinase-1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol 127:803-816
32. Henry Y, Vain P, De Buyser J (1994) Genetic analysis of in vitro plant tissue cultureresponses and regeneration capacities. Euphytica 79:45-48
33. Higashi K, Shiota H, Kamada H (1998) Patterns of expression of the genes for glutamine synthetase isoforms during somatic and zygotic embryogenesis in carrot. Plant Cell Physiol 39:418-424
34. Hirt H (2000) Connecting oxidative stress, auxin and cell cycle regulation through a plant Mitogen activated protein kinase pathway. Proc Natl Acad Sci USA 97:2405-2407
35. Hirt H, Pay A, Gyorgyey J, Bako L, Nemet K, Bogre L, Schweyen RJ, Heberle-Bors E, Dudits D (1991) Complementation of a yeast cell cycle mutant by an alfalfa cDNA encoding a protein kinase homologous to p34cdc2. Proc Natl Acad Sci USA 88:1636-1640
36. Jansen MAK, Booij H, Schel JHN, de Vries SC (1990) Calcium increases the yield of somatic embryos in carrot embryogenic suspension cultures. Plant Cell Rep 9:221-223
37. Kawahara R, Komamine A (1995) Molecular basis of somatic embryogenesis. In: Bajaj YPS (ed) Biotechnology in agriculture and forestry, vol 30. Somatic embryogenesis and synthetic seed I. Springer, Berlin Heidelberg New York, pp 30-40
38. Kawahara R, Sunabori S, Fukuda H, Komamine A (1992) A gene expressed preferentially in the globular stage of somatic embryogenesis encodes elongation-factor lα in carrot. Eur J Biochem 209:157-162
39. Kitamiya E, Suzuki S, Sano T, Nagata T (2000) Isolation of two genes that were induced upon initiation of somatic embryogenesis on carrot hypocotyls by high concentrations of 2,4-D. Plant Cell Rep 19:551-557
40. Kiyosue T, Shiota H, Higashi K, Kamada H, Shinozaki K (1998) A chromo box gene from carrot (Daucus carota L.):its cDNA structure and expression during somatic and zygotic embryogenesis. Biochem Biophysica Acta 1398:42-46
41. Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K, Higashi K, Satoh S, Kamada H, Harada H (1992) Isolation and characterization of a cDNA that encodes ECP31, an embryogenic-cell protein from carrot. Plant Mol Biol 19:239-249
42. Ko S, Thitamadee S, Yang H, Eun CH, Sage-Ono K, Higashi K, Satoh S, Kamada H (2001) Comparison and characterization of cis-regulatory regions in some embryo specific and ABA-responsive carrot genes, DcECPs. Plant Biotech 18(l):45-54
43. Komamine A, Kawahara R, Matsumoto M, Sunabori S, Toya T, Fujiwara A, Tsukuhara M, Smith J, Ito M, Fukuda H, Nomura K, Fujimura T (1992) Mechanisms of somatic embryogenesis in cell cultures: physiology, biochemistry, and molecular biology. In Vitro Cell Dev Biol Plant 28:11-14
44. Komamine A, Murata N, Nomura K (2005) Mechanisms of somatic embryogenesis in carrot suspension cultures - morphology, physiology, biochemistry, and molecular biology. In Vitro Cell Develop Biol-Plant 41:6-10
45. Leal I, Misra S (1993) Molecular cloning and characterization of a legumin-like storage protein cDNA of Douglas fir seeds. Plant Mol Biol 21:709-715
46. Linacero MR, Lopez-Bilbao MG, Vazquez AM (2001) Expression of different abscisic acid responsive genes during somatic embryogenesis in sugarcane (Saccharum officianarum). Protoplasma 217:199-204
47. Lindzen E, Choi JH (1995) A carrot cDNA encoding an atypical protein kinase homologous to plant calcium-dependent protein kinases. Plant Mol Biol 28:785-797
48. Ling V, Perera I, Zielinski RE (1991) Primary structures of Arabidopsis calmodulin isoforms deduced from the sequences of cDNA clones. Plant Physiol 96:1196-1202
49. Liu W, Hildebrand DF, Moore PJ, Collins GB (1991) Effects of exogenous auxins on expression of lipoxygenases in soybean tissue cultures. Plant Physiol 97:969-976
50. LoSchiavo F, Pitto L, Giulilano G, Torti G, Nuti Ronchi V, Marazziti D, Vergara R, Orselli S, Terzi M (1989) DNA methylation of embryogenic carrot cell cultures and its variation as caused by mutation, differentiation, hormones and hypomethylating drugs. Theor Appl Genet 77:325-331
51. Mayer U, Buttner G, Jurgens G (1993) Apical-basal pattern formation in the Arabidopsis embryo: studies on the role of the gnom gene. Development 117:149-162
52. McClure BA, Hagen G, Brown CS, Gee MA, Guilfoyle T (1989) Transcription, organization, and sequence of an auxin-regulated gene cluster in soybean. Plant Cell 1:229-239.
53. Meinke DW (1995) Molecular genetics of plant embryogenesis. Annu Rev Plant Physiol Plant Mol Biol 46:369-394
54. Mordhorst AP, Toonen MAJ, de Vries SC (1997) Plant embryogenesis. Crit Rev Plant Sci 16:535-576
55. Overvoorde PJ, Grimes HD (1994) The role of calcium and calmodulin in carrot embryogenesis. Plant Cell Physiol 35:135-144
56. Padmanabhan K, Cantliffe DJ, Koch KE (2001) Auxin-regulated gene expression and embryogenic competence in callus cultures of sweet potato, Ipomoea batata (L.) Lam. Plant Cell Rep 20:187-192
57. Pasternak T, Prinsen E, Ayaydin F, Miskoleczi P, Potters G, Asard H, Van Onckelen H, Dudtis D, Feher A (2002) The role of auxin, pH and stress in the activation of embryogenic cell division in the leaf protoplast-derived cells of alfalfa (Medicago sativa L.). Plant Physiol 129:1807-1819
58. Periera IY, Zielinski R (1992) Structure and expression of the Arabidopsis CaM-3 calmodulin gene. Plant Mol Biol 19:649-664
59. Quatrano RS (1987) The role of hormones during seed development. In: Davies PJ (eds) Plant hormones and their role in plant growth and development. Nijhoff, Dordrecht, pp 494-514
60. Raghavan V (1997) Molecular embryology of flowering plants. Cambridge University Press, New York, pp 467-499
61. Rao KS (1996) Embryogenesis in flowering plants: recent approaches and prospects. J Biosci 21:827-841
62. Russinova E, Slater A, Atanassov AI, Eliott MC (1995) Cloning of alfalfa cyclin sequences - a RACE-PCR approach. Cell Mol Biol 41:703-714
63. Sato S, Toya T, Kawahara R, Whittier RF, Fukuda H, Komamine A (1995) Isolation of a carrot gene expressed specifically during early-stage somatic embryogenesis. Plant Mol Biol 28:39-46
64. Schel JHN, Kieft H, Van Lammeren AAM (1984) Interactions between embryo and endosperm during early developmental stages of maize caryopses (Zea mays). Can J Bot 62:2842-2853
65. Schmidt EDL, De Jong AJ, de Vries SC (1994) Signal molecules involved in plant embryogenesis. Plant Mol Biol 26:1305-1313
66. Schmidt EDL, Guzzo F, Toonen MAJ, de Vries SC (1997) A leucine-rich repeat containing receptor-like kinase marks somatic plant cells competent to form embryos. Development 124:2049-2062
67. Schrader S, Kaldenhoff R, Richter G (1997) Expression of novel genes during somatic embryogenesis of suspension-cultured carrot cells (Daucus carota). J Plant Physiol 150:63-68
68. Shah K, Schmidt EDL, Vlak JM, de Vries SC (2001a) Expression of the Daucus carota somatic embryogenesis receptor kinase (DcSERK) protein in insect cells. Biochimie 83:415-421
69. Shah K, Gadella TW Jr, van Erp H, Hecht V, de Vries SC (2001b) Subcellular localization and oligomerization of the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 protein. J Mol Biol 309:641-655
70. Somleva MN, Schmidt EDL, de Vries SC (2000) Embryogenic cells in Dactylis glomerata L. (Poaceae) explants identified by cell tracking and by SERK expression. Plant Cell Rep 19:718-726
71. Sopory SK, Munshi M (1998) Protein kinases and phosphatases and their role in cellular signalling in plants. Crit Rev Plant Sci 17:245-318
72. Sterk P, Booij H, Schellekens GA, van Kammen A, de Vries SC (1991) Cell-specific expression of the carrot EP2 lipid transfer protein gene. Plant Cell 3:907-912
73. Suprasanna P, Rao PS (1997) Somatic embryogenesis in crop plants. In: Ramana Rao TV, Kothari IL (eds) Plant structure and morphogenesis. Sardar Patel University, Vallabh Vidyanagar, India, pp 29-35
74. Suprasanna P, Desai NS, Nishanth G, Ghosh SB, Laxmi N, Bapat VA (2004) Differential gene expression in embryogenic, non-embryogenic and desiccation induced cultures of sugarcane. Sugar Technol 6(4):305-309
75. Timmers ACJ, de Vries SC, Schel JHN (1989) Distribution of membrane-bound calcium and activated camoldulin during somatic embryogenesis of carrot (Daucus carota L.). Protoplasma 153:24-29
76. Timmers ACJ, Reiss HD, Bohsung J, Traxel K, Schel JHN (1996) Localization of calcium during somatic embryogenesis of carrot (Daucus carota L.). Protoplasma 190:107-118
77. Toonen MAJ, Verhees JA, Schmidt EDL, van Kammen A, de Vries SC (1997b) AtLTPl luciferase expression during carrot somatic embryogenesis. Plant J 12:1213-1221
78. Torii KU, Mitsukawa N, Oosumi T, Matsuura Y, Yokoyama R, Whittier RF, Komeda Y (1996) The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell 8:735-740
79. von Arnold S, Izabela S, Bozhkov P, Julia D, Lada F (2002) Developmental pathways of somatic embryogenesis. Plant Cell Tissue Organ Cult 69:233-249
80. Walker JC (1994) Structure and function of the receptor-like protein kinases of higher plants. Plant Mol Biol 26:1599-1609
81. Walker JC, Key JL (1982) Isolation of cloned cDNAs to auxin-responsive poly(A)+ RNAs of elongating soybean hypocotyl. Proc Natl Acad Sci USA 79:7185-7189
82. Wilde HD, Seffens WS, Thomas TL (1995) Gene expression in somatic embryos. In: Bajaj YPS (ed) Somatic embryogenesis and synthetic seed I. Biotechnology in agriculture and forestry. vol 30. Springer, Berlin, Heidelberg New York, pp 41-52
83. Wilde HD, Nelson WS, Booij H, De Viries SC, Thomas TL (1998) Gene expression programs in embryogenic and non-embryogenic carrot cultures. Planta 176:205-211
84. Wurtle ES, Wang H, Durgerian S, Nikolau BJ, Ulrich TJ (1993) Characterization of a gene that is expressed early in somatic embryogenesis of Daucus carota. Plant Physiol 102:303-312
85. Yadegari R, de Paiva GR, Laux T, Koltunow AM, Apuya N, Zimmerman JL, Fischer RL, Goldberg RB (1994) Cell differentiation and morphogenesis are uncoupled in Ara bidopsis raspberry embryos. Plant Cell 6:1713-1729
86. Yang H, Saitou T, Komeda Y, Harada H, Kamada H (1996) Late embryogenesis abundant protein in Arabidopsis thaliana homologous to carrot ECP31. Physiol Plant 98:661-666
87. Yang H, Saitou T, Komeda Y, Harada H, Kamada H (1997) Arabidopsis thaliana ECP63 encoding a LEA protein is located in chromosome 4. Gene 184:83-88
88. Yasuda H, Nakajiima M, Ito T, Ohwada T, Masuda H (2001) Partial characterization of genes whose transcripts accumulate preferentially in cell clusters in the early stages of carrot somatic embryogenesis. Plant Mol Biol 45:705-712
89. Zhu C, Kamada H, Harada H, He M, Hao S (1997) Isolation and characterization of a cDNA encoded an embryogenic cell protein-63 related to embryogenesis from carrot. Acta Bot Sin 39:1091-1098
90. Zimmerman JL (1993) Somatic embryogenesis. Plant Cell 5:1411-1423
91. Zimmerman JL, Apuya N, Darwish K, O'Caroll C (1989) Novel regulation of heat shock genes during carrot somatic embryo development. Plant Cell 1:1137-1146