Analysis of phylogenetic relationships of Potamogeton species in China based on chloroplast trnT-trnF sequences

Aquatic Botany

Volumn 89, Issue 1, 2008, Pages 34-42

  Zhang, Tao ^a   Wang, Qingdong ^a   Li, Wei ^b   Cheng, Yu ^b   Wang, Jianbo ^a  

^a WUHAN UNIVERSITY   (China)

^b Wuhan Institute of Botany Chinese Academy of Sciences   (China)

Author keywords

Hybrid; Non coding region; Phylogeny; Potamogeton; TrnT trnF

Indexed keywords

AQUATIC PLANT; CHLOROPLAST; CLADISTICS; HERB; HYBRID; PHYLOGENY; RECONSTRUCTION;

ASIA; CHINA; EURASIA; FAR EAST;

COLEOGETON; POTAMOGETON; STUCKENIA;

EID: 43049158104     PISSN: 03043770     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquabot.2008.02.002     Document Type: Article

References (56)

1. Aalto M. Potamogetonaceae fruits. II. Potamogeton robbinsii, a seldom fruiting North American species. Ann. Bot. Fenn. 11 (1974) 29-33
2. Ascherson, P., Graebner, P., 1907. Potamogetonaceae. In: Engler, G. H. A. (Ed.), Das Pflanzenreich, 31 (VI. 11). W. Engelmann, Berlin.
3. Bsorsch T., Hilu K.W., Quandt D., Wilde V., Neinhuis C., and Brathlott W. Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J. Evol. Biol. 16 (2003) 558-576
4. Börner C. Botanisch-systematische Notizen. Abh. Naturwiss. Vereine Bremen 21 (1912) 245-282
5. Cook C.D.K. Aquatic Plant Book (1990), SPB Academic Publishing, The Hague
6. Doyle J.J., and Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 12 (1990) 13-15
7. Fant J.B., Kamau E., and Preston C.D. Chloroplast evidence for the multiple origins of the hybrid Potamogeton × sudermanicus Hagstr. Aquat. Bot. 75 (2003) 531-356
8. Fant J.B., Kamau E., and Preston C.D. Chloroplast evidence for the multiple origins of the hybrid Potamogeton × fluitans. Aquat. Bot. 83 (2005) 154-160
9. Fant J.B., Preston C.D., and Barrett J.A. Isozyme evidence for the origin of Potamogeton × sudermanicus as a hybrid between P. acutifolius and P. berchtoldii. Aquat. Bot. 71 (2001) 199-208
10. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
11. Fernald M.L. The linear-leaved North American species of Potamogeton section Axillares. Mem. Am. Acad. Arts N. Ser. 17 (1932) 1-183
12. Gielly L., and Taberlet P. The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Mol. Biol. Evol. 11 (1994) 769-777
13. Hagström J.O. New Potamogetons. Bot. Notiser (1908) 97-108
14. Hagström J.O. Critical researches on the Potamogetons. Kungliga Svenska Vetenskapsakademiens Handlingar 55 5 (1916) 1-281
15. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
16. Haynes R.R. A revision of North American Potamogeton subsection pusilli (Potamogetonaceae). Rhodora 76 (1974) 564-649
17. Haynes R.R. A revision of the clasping-leaved Potamogeton (Potamogetonaceae). Sida 11 (1985) 173-188
18. Haynes R.R., Les D.H., and Král M. Two new combinations in Stuckenia, the correct name for Coleogeton (Potamogetonaceae). Novon 8 (1998) 241
19. Hettiarachchi P., and Triest L. Isozyme polymorphism in the genus Potamogeton (Potamogetonaceae). Opera Botanica Belgica vol. 4 (1991), National Botanic Garden of Belgium, Meise pp. 87-114
20. Hollingsworth P.M., Preston C.D., and Gornall R.J. Isozyme evidence for the parentage and multiple origins of Potamogeton × suecicus (P. pectinatus × P. filiformis (Potamogetonaceae). Plant Syst. Evol. 202 (1996) 219-232
21. Hollingsworth P.M., Preston C.D., and Gornall R.J. Euploid and aneuplpoid evolution in Potamogeton (Potamogetonaceae): a factual basis for interpretation. Aquat. Bot. 60 (1998) 337-358
22. Holub J. Stuckenia Börner 1912: the correct name for Coleogeton (Potamogetonaceae). Preslia 69 (1997) 361-366
23. Iida S., and Kadono Y. Genetic diversity and origin of Potamogeton × anguillanus (Potamogetonaceae) in Lake Biwa, Japan. J. Plant Res. 115 (2002) 11-16
24. Iida S., Kosuge K., and Kadono Y. Molecular phylogeny of Japanese Potamogeton species in light of noncoding chloroplast sequences. Aquat. Bot. 80 (2004) 115-127
25. Kaplan Z. Phenotypic plasticity in Potamogeton (Potamogetonaceae). Folia Geobot. 37 (2002) 141-170
26. Kaplan Z., and Fehrer J. Evidence for the hybrid origin of Potamogeton × cooperi (Potamogetonaceae): traditional morphology-based taxonomy and molecular techniques in concert. Folia Geobot. 39 (2004) 431-453
27. Kaplan Z., Plačková I., and Štěpánek J. Potamogeton × fluitans (P. natans × P. lucens) in the Czech Republic. II. Isozyme analysis. Preslia 74 (2002) 187-195
28. Kaplan Z., and Wolff P. A morphological, anatomical and isozyme study of Potamogeton × schreberi: confirmation of its recent occurrence in Germany and first documented record in France. Preslia 76 (2004) 141-161
29. Kelchner S.A. The evolution of non-coding chloroplast DNA and its application in plant systematics. Ann. Mo. Bot. Gard. 87 (2000) 482-498
30. King R.A., Gornall R.J., Preston C.D., and Croft J.M. Molecular confirmation of Potamogeton × bottnicus (P. pectinatus × P. vaginatus (Potamogetonaceae) in Britain. Bot. J. Linn. Soc. 135 (2001) 67-70
31. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
32. Les D.H., and Haynes R.R. Coleogeton (Potamogetonaceae), a new genus of pondweeds. Novon 6 (1996) 389-391
33. Les D.H., and Philbrick C.T. Studies of hybridization and chromosome number variation in aquatic angiosperms: evolutionary implications. Aquat. Bot. 44 (1993) 181-228
34. Les D.H., and Sheridan D.J. Hagström's concept of phylogenetic relationships in Potamogeton L. (Potamogetonaceae). Taxon 39 (1990) 41-58
35. Les D.H., and Sheridan D.J. Biochemical heterophylly and flavonoid evolution in North American Potamogeton (Potamogetonaceae). Am. J. Bot. 77 (1990) 453-465
36. Lindqvist C., Laet J.D., Haynes R.R., Aagesen L., Keener B.R., and Albert V.A. Molecular phylogenetics of an aquatic plant lineage, Potamogetonaceae. Cladistics 22 (2006) 1-21
37. Liu Q.L., Ge S., Tang H.B., Zhang X.L., Zhu G.F., and Lu B.R. Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on th nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. New Phytol. 170 (2005) 411-420
38. Mason-Gamer R.J., Orme N.L., and Anderson C.M. Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome 45 (2002) 991-1002
39. Miki S. The water phanerogams in Japan with special reference to those of the Province Yamashiro. Reports on the Historical Remains and Scenic and Natural Monuments in Kyoto Prefecture vol. 18 (1937) pp. 1-127 (in Japanese)
40. Müller K. SeqState-primer design and sequence statistics for phylogenetic DNA data sets. Appl. Bioinform. 4 (2005) 65-69
41. Nuin, P.A.S., 2005. MTgui-a simple interface to ModelTest. Program distributed by the author. University Health Network, University of Toronto.
42. Ogden E.C. The broad-leaved species of Potamogeton of North American north of Mexico. Rhodora 45 (1943) 57-214
43. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
44. Preston C.D. Pondweeds of Great Britain and Ireland (1995), Botanical Society of the British Isles, London
45. Raunkiær C. Anatomical Potamogeton-studies and Potamogeton fluitans. Bot. Tidsskr. 25 (1903) 253-280
46. Rieseberg L.H. The role of hybridization in evolution: old wine in new skins. Am. J. Bot. 82 (1995) 944-953
47. Simmons M.P., and Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49 (2000) 369-381
48. Soltis D.E., Soltis P.S., Mort M.E., Chase M.W., Savolainen V., Hoot S.B., and Morton C.M. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Syst. Biol. 47 (1998) 32-42
49. Sorsa P. Pollen morphology of Potamogeton and Groenlandia (Potamogetonaceae) and its taxonomic significance. Ann. Bot. Fenn. 25 (1988) 179-199
50. Sun X.Z. Flora of China vol. 8 (1992), Science Press, Beijing (in Chinese)
51. Swofford D.L. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) (2003), Sinauer Associates, Sunderlande, MA
52. Taberlet P., Gielly L., Pautou G., and Bouvet J. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17 (1991) 1105-1109
53. Wendel J.F., and Albert V.A. Phylogenetics of the cotton genus (Gossypium L.): character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications. Syst. Bot. 17 (1992) 115-143
54. Wiegleb G. Notes on pondweeds-out lines for a monographical treatment of the genus Potamogeton L. Feddes Repert. 99 (1988) 249-266
55. Wiegleb G., and Kaplan Z. An account of the species of Potamogeton L. (Potamogetonaceae). Folia Geobot. 33 (1998) 241-316
56. Wolfe K.H., Li W.H., and Sharp P.M. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Prot. Natl. Acad. Sci. U.S.A. 84 (1987) 9054-9058