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Volumn 317, Issue 2, 2008, Pages 649-659

Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis

Author keywords

Enhancers; Transcriptional regulator; Tunicate; Urochordate

Indexed keywords

TRANSCRIPTION FACTOR PAX6;

EID: 43049107466     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2008.01.036     Document Type: Article
Times cited : (24)

References (46)
  • 2
    • 0030690322 scopus 로고    scopus 로고
    • PAX2 is expressed in multiple spinal cord interneurons, including a population of EN1+ interneurons that require PAX6 for their development
    • J.D. Burrill L. Moran M.D. Goulding H. Saueressig PAX2 is expressed in multiple spinal cord interneurons, including a population of EN1+ interneurons that require PAX6 for their development Development 124 1997 4493 4503
    • (1997) Development , vol.124 , pp. 4493-4503
    • Burrill, J.D.1    Moran, L.2    Goulding, M.D.3    Saueressig, H.4
  • 3
    • 25844450053 scopus 로고    scopus 로고
    • Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    • C. Cañestro S. Bassham J. Postlethwait Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain Dev. Biol. 285 2005 298 315
    • (2005) Dev. Biol. , vol.285 , pp. 298-315
    • Cañestro, C.1    Bassham, S.2    Postlethwait, J.3
  • 4
    • 21344450734 scopus 로고    scopus 로고
    • Using ascidian embryos to study the evolution of developmental gene regulatory networks
    • A.C. Cone R.W. Zeller Using ascidian embryos to study the evolution of developmental gene regulatory networks Can. J. Zool. 83 2005 75 89
    • (2005) Can. J. Zool. , vol.83 , pp. 75-89
    • Cone, A.C.1    Zeller, R.W.2
  • 5
    • 0030743583 scopus 로고    scopus 로고
    • Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate
    • J.C. Corbo A. Erives A. Di Gregorio A. Chang M. Levine Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate Development 124 1997 2335 2344
    • (1997) Development , vol.124 , pp. 2335-2344
    • Corbo, J.C.1    Erives, A.2    Di Gregorio, A.3    Chang, A.4    Levine, M.5
  • 6
    • 0031055201 scopus 로고    scopus 로고
    • Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis
    • J.C. Corbo M. Levine R.W. Zeller Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis Development 124 1997 589 602
    • (1997) Development , vol.124 , pp. 589-602
    • Corbo, J.C.1    Levine, M.2    Zeller, R.W.3
  • 7
    • 85013830483 scopus 로고    scopus 로고
    • The Regulatory Genome
    • E.H. Davidson The Regulatory Genome 2006 Academic Press San Diego
    • (2006)
    • Davidson, E.H.1
  • 8
    • 0036594371 scopus 로고    scopus 로고
    • Analyzing gene regulation in ascidian embryos: new tools for new perspectives
    • A. Di Gregorio M. Levine Analyzing gene regulation in ascidian embryos: new tools for new perspectives Differentiation 70 2002 132 139
    • (2002) Differentiation , vol.70 , pp. 132-139
    • Di Gregorio, A.1    Levine, M.2
  • 10
    • 0025002190 scopus 로고
    • A modular set of lacZ fusion vectors for studying gene expression in Caenorhabditis elegans
    • A. Fire S.W. Harrison D. Dixon A modular set of lacZ fusion vectors for studying gene expression in Caenorhabditis elegans Gene 93 1990 189 198
    • (1990) Gene , vol.93 , pp. 189-198
    • Fire, A.1    Harrison, S.W.2    Dixon, D.3
  • 11
    • 0003690010 scopus 로고    scopus 로고
    • Master Control Genes in Development and Evolution: The Homeobox Story
    • W.J. Gehring Master Control Genes in Development and Evolution: The Homeobox Story 1998 Yale New Haven
    • (1998)
    • Gehring, W.J.1
  • 12
    • 0036005756 scopus 로고    scopus 로고
    • The genetic control of eye development and its implications for the evolution of the various eye-types
    • W.J. Gehring The genetic control of eye development and its implications for the evolution of the various eye-types Int. J. Dev. Biol. 46 2002 65 73
    • (2002) Int. J. Dev. Biol. , vol.46 , pp. 65-73
    • Gehring, W.J.1
  • 13
    • 0031038186 scopus 로고    scopus 로고
    • Conservation of Pax-6 in a lower chordate, the ascidian Phallusia mammillata
    • S. Glardon P. Callaerts G. Halder W.J. Gehring Conservation of Pax-6 in a lower chordate, the ascidian Phallusia mammillata Development 124 1997 817 825
    • (1997) Development , vol.124 , pp. 817-825
    • Glardon, S.1    Callaerts, P.2    Halder, G.3    Gehring, W.J.4
  • 14
    • 0036008319 scopus 로고    scopus 로고
    • New 3′ elements control Pax6 expression in the developing pretectum, neural retina and olfactory region
    • C. Griffin D.A. Kleinjan B. Doe V. van Heyningen New 3′ elements control Pax6 expression in the developing pretectum, neural retina and olfactory region Mech. Dev. 112 2002 89 100
    • (2002) Mech. Dev. , vol.112 , pp. 89-100
    • Griffin, C.1    Kleinjan, D.A.2    Doe, B.3    van Heyningen, V.4
  • 15
    • 0026734111 scopus 로고
    • Pax in development. [Review]
    • P. Gruss C. Walther Pax in development. [Review] Cell 69 1992 719 722
    • (1992) Cell , vol.69 , pp. 719-722
    • Gruss, P.1    Walther, C.2
  • 16
    • 0033582219 scopus 로고    scopus 로고
    • Functional analysis of an eye specific enhancer of the eyeless gene in Drosophila
    • B. Hauck W.J. Gehring U. Walldorf Functional analysis of an eye specific enhancer of the eyeless gene in Drosophila Proc. Natl. Acad. Sci. U. S. A. 96 1999 564 569
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 564-569
    • Hauck, B.1    Gehring, W.J.2    Walldorf, U.3
  • 17
    • 27744572078 scopus 로고    scopus 로고
    • Structure of ocellus photoreceptors in the ascidian Ciona intestinalis larva as revealed by an anti-arrestin antibody
    • T. Horie H. Orii M. Nakagawa Structure of ocellus photoreceptors in the ascidian Ciona intestinalis larva as revealed by an anti-arrestin antibody J. Neurobiol. 65 2005 241 250
    • (2005) J. Neurobiol. , vol.65 , pp. 241-250
    • Horie, T.1    Orii, H.2    Nakagawa, M.3
  • 18
    • 33846906713 scopus 로고    scopus 로고
    • Neurons of the ascidian larval nervous system in Ciona intestinalis: I. Central nervous system
    • J.H. Imai I.A. Meinertzhagen Neurons of the ascidian larval nervous system in Ciona intestinalis : I. Central nervous system J. Comp. Neurol. 501 2007 316 334
    • (2007) J. Comp. Neurol. , vol.501 , pp. 316-334
    • Imai, J.H.1    Meinertzhagen, I.A.2
  • 19
    • 4544303883 scopus 로고    scopus 로고
    • Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks
    • K.S. Imai K. Hino K. Yagi N. Satoh Y. Satou Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks Development 131 2004 4047 4058
    • (2004) Development , vol.131 , pp. 4047-4058
    • Imai, K.S.1    Hino, K.2    Yagi, K.3    Satoh, N.4    Satou, Y.5
  • 20
    • 37349053435 scopus 로고    scopus 로고
    • Whole-mount in-situ hybridization using laboratory mini-columns
    • S.Q. Irvine Whole-mount in-situ hybridization using laboratory mini-columns BioTechniques 43 2007 764 768
    • (2007) BioTechniques , vol.43 , pp. 764-768
    • Irvine, S.Q.1
  • 21
    • 34547775049 scopus 로고    scopus 로고
    • Non-overlapping expression patterns of the clustered DllA/B genes in the ascidian Ciona intestinalis
    • S.Q. Irvine M.C. Cangiano B.J. Millette E.S. Gutter Non-overlapping expression patterns of the clustered DllA/B genes in the ascidian Ciona intestinalis J. Exp. Zool. (Mol. Dev. Evol.) 308B 2007 428 441
    • (2007) J. Exp. Zool. (Mol. Dev. Evol.) , vol.308B , pp. 428-441
    • Irvine, S.Q.1    Cangiano, M.C.2    Millette, B.J.3    Gutter, E.S.4
  • 22
    • 10944248926 scopus 로고    scopus 로고
    • Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
    • D.S. Johnson B. Davidson C.D. Brown W.C. Smith A. Sidow Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance Genome Res. 14 2004 2448 2456
    • (2004) Genome Res. , vol.14 , pp. 2448-2456
    • Johnson, D.S.1    Davidson, B.2    Brown, C.D.3    Smith, W.C.4    Sidow, A.5
  • 23
    • 0032895297 scopus 로고    scopus 로고
    • Distinct cis-essential modules direct the time–space pattern of the Pax6 gene activity
    • B. Kammandel K. Chowdhury A. Stoykova S. Aparicio S. Brenner P. Gruss Distinct cis -essential modules direct the time–space pattern of the Pax6 gene activity Dev. Biol. 205 1999 79 97
    • (1999) Dev. Biol. , vol.205 , pp. 79-97
    • Kammandel, B.1    Chowdhury, K.2    Stoykova, A.3    Aparicio, S.4    Brenner, S.5    Gruss, P.6
  • 24
    • 0347914540 scopus 로고    scopus 로고
    • Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription
    • D. Kleinjan A. Seawright A. Childs V. van Heyningen Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription Dev. Biol. 265 2004 462 477
    • (2004) Dev. Biol. , vol.265 , pp. 462-477
    • Kleinjan, D.1    Seawright, A.2    Childs, A.3    van Heyningen, V.4
  • 26
    • 33646935467 scopus 로고    scopus 로고
    • Prospective protochordate homologs of vertebrate midbrain and MHB, with some thoughts on MHB origins
    • T.C. Lacalli Prospective protochordate homologs of vertebrate midbrain and MHB, with some thoughts on MHB origins Int. J. Dev. Biol. 2 2006 104 109
    • (2006) Int. J. Dev. Biol. , vol.2 , pp. 104-109
    • Lacalli, T.C.1
  • 27
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change
    • M.Z. Ludwig N.H. Patel M. Kreitman Functional analysis of eve stripe 2 enhancer evolution in Drosophila : rules governing conservation and change Development 125 1998 949 958
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.Z.1    Patel, N.H.2    Kreitman, M.3
  • 29
    • 0345307692 scopus 로고    scopus 로고
    • Pax gene expression in the developing central nervous system of Ciona intestinalis
    • F. Mazet J.A. Hutt J. Millard S.M. Shimeld Pax gene expression in the developing central nervous system of Ciona intestinalis Gene Expr. Patterns 3 2003 743 745
    • (2003) Gene Expr. Patterns , vol.3 , pp. 743-745
    • Mazet, F.1    Hutt, J.A.2    Millard, J.3    Shimeld, S.M.4
  • 30
    • 2942720409 scopus 로고    scopus 로고
    • Conservation of sequence and function in the Pax6 regulatory elements
    • R. Morgan Conservation of sequence and function in the Pax6 regulatory elements Trends Genet. 20 2004 283 287
    • (2004) Trends Genet. , vol.20 , pp. 283-287
    • Morgan, R.1
  • 31
    • 0024232630 scopus 로고
    • Development of the central nervous system of the larva of the ascidian, Ciona intestinalis L: I. the early lineages of the neural plate
    • D. Nicol I.A. Meinertzhagen Development of the central nervous system of the larva of the ascidian, Ciona intestinalis L: I. the early lineages of the neural plate Dev. Biol. 130 1988 721 736
    • (1988) Dev. Biol. , vol.130 , pp. 721-736
    • Nicol, D.1    Meinertzhagen, I.A.2
  • 32
    • 0025916426 scopus 로고
    • Cell counts and maps in the larval central nervous system of the ascidian Ciona intestinalis
    • D. Nicol I.A. Meinertzhagen Cell counts and maps in the larval central nervous system of the ascidian Ciona intestinalis J. Comp. Neurol. 309 1991 415 429
    • (1991) J. Comp. Neurol. , vol.309 , pp. 415-429
    • Nicol, D.1    Meinertzhagen, I.A.2
  • 33
    • 0023202572 scopus 로고
    • Cell lineage analysis in ascidian embryos by intracellular injection of a tracer enzyme: III. Up to the tissue restricted stage
    • H. Nishida Cell lineage analysis in ascidian embryos by intracellular injection of a tracer enzyme: III. Up to the tissue restricted stage Dev. Biol. 121 1987 526 541
    • (1987) Dev. Biol. , vol.121 , pp. 526-541
    • Nishida, H.1
  • 34
    • 34248995303 scopus 로고    scopus 로고
    • Geneological relationships within and among shallow-water Ciona species (Ascidiacea)
    • M.L. Nydam R.G. Harrison Geneological relationships within and among shallow-water Ciona species (Ascidiacea) Mar. Biol. 151 2007 1839 1847
    • (2007) Mar. Biol. , vol.151 , pp. 1839-1847
    • Nydam, M.L.1    Harrison, R.G.2
  • 35
    • 17744380974 scopus 로고    scopus 로고
    • Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis
    • I. Oda-Ishii V. Bertrand I. Matsuo P. Lemaire H. Saiga Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis Development 132 2005 1663 1674
    • (2005) Development , vol.132 , pp. 1663-1674
    • Oda-Ishii, I.1    Bertrand, V.2    Matsuo, I.3    Lemaire, P.4    Saiga, H.5
  • 36
    • 0032973144 scopus 로고    scopus 로고
    • High conservation of cis-regulatory elements between quail and human for the Pax-6 gene
    • S. Plaza S. Saule C. Dozier High conservation of cis -regulatory elements between quail and human for the Pax-6 gene Dev. Genes Evol. 209 1999 165 173
    • (1999) Dev. Genes Evol. , vol.209 , pp. 165-173
    • Plaza, S.1    Saule, S.2    Dozier, C.3
  • 37
    • 26944488352 scopus 로고    scopus 로고
    • Surfing with the tunicates into the post-genome era
    • N. Satoh M. Levine Surfing with the tunicates into the post-genome era Genes Dev. 19 2005 2407 2411
    • (2005) Genes Dev. , vol.19 , pp. 2407-2411
    • Satoh, N.1    Levine, M.2
  • 38
    • 25444448272 scopus 로고    scopus 로고
    • An integrated database of the ascidian, Ciona intestinalis: towards functional genomics
    • Y. Satou K. T. E. Shoguchi A. Nakayama N. Satoh An integrated database of the ascidian, Ciona intestinalis : towards functional genomics Zool. Sci. 22 2005 837 843
    • (2005) Zool. Sci. , vol.22 , pp. 837-843
    • Satou, Y.1    T., K.2    Shoguchi, E.3    Nakayama, A.4    Satoh, N.5
  • 39
    • 2442476580 scopus 로고    scopus 로고
    • The mammalian transcriptome and the function of non-coding DNA sequences
    • S.A. Shabalina N.A. Spiridonov The mammalian transcriptome and the function of non-coding DNA sequences Genome Biol. 5 2004 105
    • (2004) Genome Biol. , vol.5 , pp. 105
    • Shabalina, S.A.1    Spiridonov, N.A.2
  • 40
    • 0036844682 scopus 로고    scopus 로고
    • Pax6; a pleiotropic player in development
    • T.I. Simpson D.J. Price Pax6; a pleiotropic player in development BioEssays 24 2002 1041 1051
    • (2002) BioEssays , vol.24 , pp. 1041-1051
    • Simpson, T.I.1    Price, D.J.2
  • 41
    • 0032880773 scopus 로고    scopus 로고
    • Evolutionary alterations of the minimal promoter for notochord-specific Brachyury expression in ascidian embryos
    • H. Takahashi Y. Mitani G. Satoh N. Satoh Evolutionary alterations of the minimal promoter for notochord-specific Brachyury expression in ascidian embryos Development 126 1999 3725 3734
    • (1999) Development , vol.126 , pp. 3725-3734
    • Takahashi, H.1    Mitani, Y.2    Satoh, G.3    Satoh, N.4
  • 42
    • 0031919446 scopus 로고    scopus 로고
    • Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes
    • H. Wada H. Saiga N. Satoh P.W.H. Holland Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8 , Hox and Otx genes Development 125 1998 1113 1122
    • (1998) Development , vol.125 , pp. 1113-1122
    • Wada, H.1    Saiga, H.2    Satoh, N.3    Holland, P.W.H.4
  • 43
    • 0026340588 scopus 로고
    • Pax-6, a murine paired box gene, is expressed in the developing CNS
    • C. Walther P. Gruss Pax-6 , a murine paired box gene, is expressed in the developing CNS Development 113 1991 1435 1449
    • (1991) Development , vol.113 , pp. 1435-1449
    • Walther, C.1    Gruss, P.2
  • 46
    • 16644392663 scopus 로고    scopus 로고
    • Generation and use of transgenic ascidian embryos. Development of sea urchins, ascidians, and other invertebrate deuterostomes: experimental approaches
    • R.W. Zeller Generation and use of transgenic ascidian embryos. Development of sea urchins, ascidians, and other invertebrate deuterostomes: experimental approaches Meth. Cell Biol. 74 2004 713 730
    • (2004) Meth. Cell Biol. , vol.74 , pp. 713-730
    • Zeller, R.W.1


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