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Volumn 32, Issue 7, 2008, Pages 1546-1568

A modified iterative IOM approach for optimization of biochemical systems

Author keywords

Biochemical systems; Lagrangian multiplier; Linear programming; Optimization; S system

Indexed keywords

APPROXIMATION THEORY; LAGRANGE MULTIPLIERS; LINEAR PROGRAMMING; OPTIMIZATION;

EID: 42949152776     PISSN: 00981354     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compchemeng.2007.07.008     Document Type: Article
Times cited : (15)

References (33)
  • 1
    • 0034610099 scopus 로고    scopus 로고
    • Metabolism of citric acid production by Aspergillus niger: Model definition, steady state analysis, dynamic behavior and constrained optimization of citric acid production rate
    • Alvarez-Vasquez F., González-Alcón C., and Torres N.V. Metabolism of citric acid production by Aspergillus niger: Model definition, steady state analysis, dynamic behavior and constrained optimization of citric acid production rate. Biotechnology and Bioengineering 70 (2000) 82-108
    • (2000) Biotechnology and Bioengineering , vol.70 , pp. 82-108
    • Alvarez-Vasquez, F.1    González-Alcón, C.2    Torres, N.V.3
  • 2
    • 15744403385 scopus 로고    scopus 로고
    • Optimization of metabolic pathways under stability considerations
    • Chang Y.-J., and Sahinidis N.V. Optimization of metabolic pathways under stability considerations. Computers and Chemical Engineering 29 (2005) 447-458
    • (2005) Computers and Chemical Engineering , vol.29 , pp. 447-458
    • Chang, Y.-J.1    Sahinidis, N.V.2
  • 4
    • 42949179174 scopus 로고    scopus 로고
    • Ferreira, A. (2000). PLAS, free software available on: http://www.dqb.fc.ul.pt/docentes/aferreira/plas.html.
    • Ferreira, A. (2000). PLAS, free software available on: http://www.dqb.fc.ul.pt/docentes/aferreira/plas.html.
  • 6
    • 0030141280 scopus 로고    scopus 로고
    • Analysis and design of metabolic reaction networks via mixed-integer linear optimization
    • Hatzimanikatis V., Floudas C.A., and Bailey J.E. Analysis and design of metabolic reaction networks via mixed-integer linear optimization. AIChE Journal 42 (1996) 1277-1292
    • (1996) AIChE Journal , vol.42 , pp. 1277-1292
    • Hatzimanikatis, V.1    Floudas, C.A.2    Bailey, J.E.3
  • 8
    • 0025923478 scopus 로고
    • Mathematical analysis of enzymatic reaction systems using optimization principles
    • Heinrich R., Schuster S., and Holzhütter H.G. Mathematical analysis of enzymatic reaction systems using optimization principles. European Journal of Biochemistry 210 (1991) 1-21
    • (1991) European Journal of Biochemistry , vol.210 , pp. 1-21
    • Heinrich, R.1    Schuster, S.2    Holzhütter, H.G.3
  • 9
    • 0343238992 scopus 로고    scopus 로고
    • Optimization of tryptophan production in bacteria design of a strategy for genetic manipulation of the tryptophan operon for tryptophan flux maximization
    • Marín-Sanguino A., and Torres N.V. Optimization of tryptophan production in bacteria design of a strategy for genetic manipulation of the tryptophan operon for tryptophan flux maximization. Biotechnology Progress 16 (2000) 133-145
    • (2000) Biotechnology Progress , vol.16 , pp. 133-145
    • Marín-Sanguino, A.1    Torres, N.V.2
  • 10
    • 0036489868 scopus 로고    scopus 로고
    • Modelling, steady state analysis and optimization of the catalytic efficiency of the triosephosphate
    • Marín-Sanguino A., and Torres N.V. Modelling, steady state analysis and optimization of the catalytic efficiency of the triosephosphate. Bulletin of Mathematical Biology 64 (2002) 301-326
    • (2002) Bulletin of Mathematical Biology , vol.64 , pp. 301-326
    • Marín-Sanguino, A.1    Torres, N.V.2
  • 11
    • 0037696059 scopus 로고    scopus 로고
    • Optimization of biochemical systems by linear programming and general mass action model representations
    • Marín-Sanguino A., and Torres N.V. Optimization of biochemical systems by linear programming and general mass action model representations. Mathematical Biosciences 184 (2003) 187-200
    • (2003) Mathematical Biosciences , vol.184 , pp. 187-200
    • Marín-Sanguino, A.1    Torres, N.V.2
  • 12
    • 0029876941 scopus 로고    scopus 로고
    • Application of biochemical systems theory to metabolism in human red blood cells
    • Ni T.-C., and Savageau M.A. Application of biochemical systems theory to metabolism in human red blood cells. Journal of Biological Chemistry 271 (1996) 7927-7941
    • (1996) Journal of Biological Chemistry , vol.271 , pp. 7927-7941
    • Ni, T.-C.1    Savageau, M.A.2
  • 13
    • 0029902666 scopus 로고    scopus 로고
    • Model assessment and refinement using strategies from biochemical systems theory: Application to metabolism in human red blood cells
    • Ni T.-C., and Savageau M.A. Model assessment and refinement using strategies from biochemical systems theory: Application to metabolism in human red blood cells. Journal of Theoretical Biology 179 (1996) 329-368
    • (1996) Journal of Theoretical Biology , vol.179 , pp. 329-368
    • Ni, T.-C.1    Savageau, M.A.2
  • 14
    • 1842328570 scopus 로고    scopus 로고
    • Quantitative assessment of uncertainty in the optimization of metabolic pathways
    • Petkov S.B., and Maranas C.D. Quantitative assessment of uncertainty in the optimization of metabolic pathways. Biotechnology and Bioengineering 56 (1997) 145-161
    • (1997) Biotechnology and Bioengineering , vol.56 , pp. 145-161
    • Petkov, S.B.1    Maranas, C.D.2
  • 16
    • 0029349757 scopus 로고
    • Coping with model-reality differences in industrial process optimization-A review of integrated system optimization and parameter estimation (ISOPE)
    • Roberts P.D. Coping with model-reality differences in industrial process optimization-A review of integrated system optimization and parameter estimation (ISOPE). Computers in Industry 26 (1995) 281-290
    • (1995) Computers in Industry , vol.26 , pp. 281-290
    • Roberts, P.D.1
  • 17
    • 0014649230 scopus 로고
    • Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions
    • Savageau M.A. Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions. Journal of Theoretical Biology 25 (1969) 365-369
    • (1969) Journal of Theoretical Biology , vol.25 , pp. 365-369
    • Savageau, M.A.1
  • 18
    • 0014658880 scopus 로고
    • Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation
    • Savageau M.A. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. Journal of Theoretical Biology 25 (1969) 370-379
    • (1969) Journal of Theoretical Biology , vol.25 , pp. 370-379
    • Savageau, M.A.1
  • 19
    • 0014733809 scopus 로고
    • Biochemical systems analysis. III. Dynamic solutions using a power-law approximation
    • Savageau M.A. Biochemical systems analysis. III. Dynamic solutions using a power-law approximation. Journal of Theoretical Biology 26 (1970) 215-226
    • (1970) Journal of Theoretical Biology , vol.26 , pp. 215-226
    • Savageau, M.A.1
  • 21
    • 45949117248 scopus 로고
    • Biochemical systems theory and metabolic control theory. 1. Fundamental similarities and differences
    • Savageau M.A., Voit E.O., and Irvine D.H. Biochemical systems theory and metabolic control theory. 1. Fundamental similarities and differences. Mathematical Biosciences 86 (1987) 127-145
    • (1987) Mathematical Biosciences , vol.86 , pp. 127-145
    • Savageau, M.A.1    Voit, E.O.2    Irvine, D.H.3
  • 22
    • 45949116170 scopus 로고
    • Biochemical systems theory and metabolic control theory. 2. The role of summation and connectivity relationships
    • Savageau M.A., Voit E.O., and Irvine D.H. Biochemical systems theory and metabolic control theory. 2. The role of summation and connectivity relationships. Mathematical Biosciences 86 (1987) 147-169
    • (1987) Mathematical Biosciences , vol.86 , pp. 147-169
    • Savageau, M.A.1    Voit, E.O.2    Irvine, D.H.3
  • 23
    • 16344388274 scopus 로고    scopus 로고
    • Design of metabolic engineering strategies for maximizing l-(-)-carnitine production by Escherichia coli. Integration of the metabolic and bioreactor levels
    • Sevilla A., Vera J., Díaz Z., Cánovas M., Torres N.V., and Iborra J.L. Design of metabolic engineering strategies for maximizing l-(-)-carnitine production by Escherichia coli. Integration of the metabolic and bioreactor levels. Biotechnology Progress 21 (2005) 329-337
    • (2005) Biotechnology Progress , vol.21 , pp. 329-337
    • Sevilla, A.1    Vera, J.2    Díaz, Z.3    Cánovas, M.4    Torres, N.V.5    Iborra, J.L.6
  • 24
    • 0026470975 scopus 로고
    • The tricarboxylic acid cycle in Dictyostelium discoideum. II. Evaluation of model consistency and robustness
    • Shiraishi F., and Savageau M.A. The tricarboxylic acid cycle in Dictyostelium discoideum. II. Evaluation of model consistency and robustness. Journal of Biological Chemistry 267 (1992) 22919-22925
    • (1992) Journal of Biological Chemistry , vol.267 , pp. 22919-22925
    • Shiraishi, F.1    Savageau, M.A.2
  • 26
    • 0030569904 scopus 로고    scopus 로고
    • Optimization of nonlinear biotechnological processes with linear programming: Application to citric acid production by Aspergillus niger
    • Torres N.V., Voit E.O., and González-Alcón C. Optimization of nonlinear biotechnological processes with linear programming: Application to citric acid production by Aspergillus niger. Biotechnology and Bioengineering 49 (1996) 247-258
    • (1996) Biotechnology and Bioengineering , vol.49 , pp. 247-258
    • Torres, N.V.1    Voit, E.O.2    González-Alcón, C.3
  • 27
    • 0031554875 scopus 로고    scopus 로고
    • An indirect optimization method for biochemical systems: Description of method and application to the maximization of the rate of ethanol, glycerol and carbohydrate production in Saccharomyces cerevisiae
    • Torres N.V., Voit E.O., González-Alcón C., and Rodríguez F. An indirect optimization method for biochemical systems: Description of method and application to the maximization of the rate of ethanol, glycerol and carbohydrate production in Saccharomyces cerevisiae. Biotechnology and Bioengineering 55 (1997) 758-772
    • (1997) Biotechnology and Bioengineering , vol.55 , pp. 758-772
    • Torres, N.V.1    Voit, E.O.2    González-Alcón, C.3    Rodríguez, F.4
  • 28
    • 0037899231 scopus 로고    scopus 로고
    • Multicriteria optimization of biochemical systems by linear programming: Application to the production of ethanol by Saccharomyces cerevisiae
    • Vera J., De Atauri P., Cascante M., and Torres N.V. Multicriteria optimization of biochemical systems by linear programming: Application to the production of ethanol by Saccharomyces cerevisiae. Biotechnology and Bioengineering 83 (2003) 335-343
    • (2003) Biotechnology and Bioengineering , vol.83 , pp. 335-343
    • Vera, J.1    De Atauri, P.2    Cascante, M.3    Torres, N.V.4
  • 29
    • 0348147684 scopus 로고    scopus 로고
    • Integrated nonlinear optimization of bioprocesses via linear programming
    • Vera J., Torres N.V., Moles C.G., and Banga J. Integrated nonlinear optimization of bioprocesses via linear programming. AIChE Journal 49 (2003) 3173-3187
    • (2003) AIChE Journal , vol.49 , pp. 3173-3187
    • Vera, J.1    Torres, N.V.2    Moles, C.G.3    Banga, J.4
  • 30
    • 0026911028 scopus 로고
    • Optimization of integrated biochemical systems
    • Voit E.O. Optimization of integrated biochemical systems. Biotechnology and Bioengineering 40 (1992) 572-582
    • (1992) Biotechnology and Bioengineering , vol.40 , pp. 572-582
    • Voit, E.O.1
  • 32
    • 0035812439 scopus 로고    scopus 로고
    • Assessment of effects of experimental imprecision on optimized biochemical systems
    • Voit E.O., and Del Signore M. Assessment of effects of experimental imprecision on optimized biochemical systems. Biotechnology and Bioengineering 74 (2001) 443-448
    • (2001) Biotechnology and Bioengineering , vol.74 , pp. 443-448
    • Voit, E.O.1    Del Signore, M.2
  • 33
    • 0342762090 scopus 로고    scopus 로고
    • Model analysis concerning the effects of growth rate and intracellular tryptophan level on the stability and dynamics of tryptophan biosynthesis in bacteria
    • Xiu Z.-L., Zeng A.-P., and Deckwer W.-D. Model analysis concerning the effects of growth rate and intracellular tryptophan level on the stability and dynamics of tryptophan biosynthesis in bacteria. Journal of Biotechnology 58 (1997) 125-140
    • (1997) Journal of Biotechnology , vol.58 , pp. 125-140
    • Xiu, Z.-L.1    Zeng, A.-P.2    Deckwer, W.-D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.