Amelogenin, the major protein of tooth enamel: A new phylogenetic marker for ordinal mammal relationships

Molecular Phylogenetics and Evolution

Volumn 47, Issue 2, 2008, Pages 865-869

  Delgado, Sidney ^a   Vidal, Nicolas ^b   Veron, Géraldine ^c   Sire, Jean Yves ^a  

^a Université Pierre and Marie Curie Paris 6 ^*  (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c Sorbonne Universités   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMELOGENIN;

ANIMAL; ARTICLE; DNA SEQUENCE; ENAMEL; GENETIC MARKER; GENETICS; HUMAN; MAMMAL; METABOLISM; PHYLOGENY;

AMELOGENIN; ANIMALS; DENTAL ENAMEL; GENETIC MARKERS; HUMANS; MAMMALS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

MAMMALIA;

EID: 42749095458     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.01.025     Document Type: Article

References (31)

1. Amrine-Madsen H., Koepfli K.-P., Wayne R.K., and Springer M.S. A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Mol. Phylogent. Evol. 28 (2003) 225-240
2. Bininda-Emonds O.R.P., Cardillo M., Jones K.E., MacPhee R.D.E., Beck R.M.D., Grenyer R., Price S.A., Vos R.A., Gittleman J.L., and Purvis A. The delayed rise of present-day mammals. Nature 446 (2007) 507-512
3. Delgado S., Girondot M., and Sire J.-Y. Molecular evolution of amelogenin in mammals. J. Mol. Evol. 60 (2005) 12-30
4. Delsuc F., Scally M., Madsen O., Stanhope M.J., and de Jong W.W. Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Mol. Biol. Evol. 19 (2002) 1656-1671
5. Hallström B., Kullberg M., Nilsson M., and Janke A. Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sistergroups. Mol. Biol. 24 (2007) 2059-2068
6. Huysseune A., and Sire J.-Y. Evolution of patterns and processes in teeth and tooth-related tissues in non-mammalian vertebrates. Eur. J. Oral Sci. 106 suppl. 1 (1998) 437-481
7. Ishiyama M., Mikami M., Shimokawa H., and Oida S. Amelogenin protein in tooth germs of the snake Elaphe quadrivirgata, immunohistochemistry, cloning and cDNA sequence. Arch. Histol. Cytol. 61 (1998) 467-474
8. Iwase M., Satta Y., Hirai Y., Hirai H., Imai H., and Takahata N. The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species. Proc. Natl. Acad. Sci. USA 100 (2003) 5258-5263
9. Kriegs J.O., Churakov G., Kiefmann M., Jordan U., Brosius J., and Schmitz J. Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol. 4 (2006) e91
10. Li W.-H., Yi S., and Makova K.D. Male-driven evolution. Curr. Opin. Genet. Dev. 12 (2002) 650-656
11. Madsen O., Scally M., Douady C.J., Kao D.J., Debry R.W., Adkins R., Amrine H.M., Stanhope M.J., de Jong W.W., and Springer M.S. Parallel adaptive radiations in two major clades of placental mammals. Nature 409 (2001) 610-614
12. Murphy W.J., Elzirik E., Johnson W.E., Zhang Y.P., Ryder O.A., and O'Brien S.J. Molecular phylogenetics and the origin of placental mammals. Nature 409 (2001) 614-618
13. Murphy W.J., Pringle T.H., Crider T.A., Springer M.S., and Miller W. Using genomic data to unravel the root of the placental mammal phylogeny. Genome Res. 17 (2007) 413-421
14. Nishihara H., Hasegawa M., and Okada N. Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retrosposon insertions. Proc. Natl. Acad. Sci. USA 103 (2006) 9929-9934
15. Ohno S. Sex chromosomes and sex-linked genes. Monographs on Endocrinology vol. 1 (1967), Springer-Verlag, Berlin
16. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 818-819
17. Rambaut, A., 1996. Se-Al. .
18. Richard B., Delgado S., Gorry P., and Sire J.-Y. A study of polymorphism in human AMELX. Arch. Oral Biol. 52 (2007) 1026-1031
19. Ronquist F., and Huelsenbeck J.P. Mr Bayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
20. Sanchez-Villagra M.R., Narita Y., and Kuratani S. Thoracolumbar vertebral number: the first skeletal synapomorphy for afrotherian mammals. Syst. Biodiversity (2005) 1-7
21. Sire J.-Y., Davit-Béal T., Delgado S., and Gu X. The origin and evolution of enamel mineralization genes. Cells Tissues Organs 186 (2007) 25-48
22. Sire J.-Y., and Huysseune A. Formation of skeletal and dental tissues in fish: a comparative and evolutionary approach. Biol. Rev. 78 (2003) 219-249
23. Smith M.M., and Coates M.I. Evolutionary origins of teeth and jaws: developmental models and phylogenetic patterns. In: Teaford M.F., Smith M.M., and Ferguson M.W.J. (Eds). Development, Function and Evolution of Teeth (2000), Cambridge University Press, Cambridge, MA 133-151
24. Springer M.S., Cleven G.C., Madsen O., de Jong W.W., Waddell V.G., Amrine H.M., and Stanhope M.J. Endemic African mammals shake the phylogenetic tree. Nature 388 (1997) 61-64
25. Springer M.S., Murphy W.J., Eizirik E., and O'Brien S.J. Placental mammal diversification and the Cretaceous-Tertiary boundary. Proc. Natl. Acad. Sci. USA 100 (2003) 1056-1061
26. Stanhope H.M., Waddell V.G., Madsen O., de Jong W.W., Hedges S.B., Cleven G.C., Kao D., and Springer M.S. Molecular support for multiple origins of insectivora and for a new order of endemic African insectivore mammals. Proc. Natl. Acad. Sci. USA 95 (1998) 9967-9972
27. *and other methods), version 4. Sinauer Associates, Sunderland, Mass.
28. Tabuce R., Marivaux L., Adaci M., Bensalah M., Hartenberger J.-L., Mahboubi M., Mebrouk F., Tafforeau P., and Jaeger J.-J. Early Tertiary mammals from North Africa reinforce the molecular Afrotheria clade. Proc. R. Soc. Lond. B 274 (2007) 1159-1166
29. Toyosawa S., O'HUigin C., Figueroa F., Tichy H., and Klein J. Identification and characterization of amelogenin genes in monotremes, reptiles, and amphibians. Proc. Natl. Acad. Sci. USA 95 (1998) 13056-13061
30. Waddell P.J., and Shelley S. Evaluating placental inter-ordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models. Mol. Phylogenet. Evol. 28 (2003) 197-224
31. Yi S., Summers T.J., Pearson N.M., and Li W.-H. Recombination has little effect on the rate of sequence divergence in pseudoautosomal boundary 1 among humans and great apes. Genome Res. 14 (2004) 37-43