Structure of recombinant capsids formed by the β-annulus deletion mutant - rCP (Δ48-59) of Sesbania mosaic virus

Virology

Volumn 375, Issue 1, 2008, Pages 190-196

  Pappachan, Anju ^a   Subashchandrabose, Chinnathambi ^a   Satheshkumar, P S ^a   Savithri, H S ^a   Murthy, M R N ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

annulus; Coat protein; Sesbania mosaic virus; Virus assembly; X ray crystallography

Indexed keywords

COAT PROTEIN;

ARTICLE; BETA ANNULUS; DELETION MUTANT; ESCHERICHIA COLI; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; SESBANIA MOSAIC VIRUS; VIRUS CAPSID; VIRUS LIKE AGENT; VIRUS MORPHOLOGY; VIRUS PARTICLE; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CAPSID PROTEINS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; GENE EXPRESSION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLANT VIRUSES; PROTEIN STRUCTURE, QUATERNARY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE DELETION; SESBANIA; VIROSOMES; VIRUS ASSEMBLY;

ESCHERICHIA COLI; MIRIDAE; SESBANIA MOSAIC VIRUS;

EID: 42749093687     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.01.023     Document Type: Article

References (34)

1. Abad-Zapatero C., Abdel-Meguid S.S., Johnson J.E., Leslie A.G.W., Rayment I., Rossmann M.G., Suck D., and Tsukihara T. Structure of southern bean mosaic virus at 2.8 Å resolution. Nature 286 (1980) 33-39
2. Bhuvaneshwari M., Subramanya H.S., Gopinath K., Savithri H.S., Nayudu M.V., and Murthy M.R.N. Structure of sesbania mosaic virus at 3 Å resolution. Structure 3 (1995) 1021-1030
3. Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., Read R.J., Rice L.M., Simonson T., and Warren G.L. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr., D 54 (1998) 905-921
4. Cohen G.E. ALIGN: a program to superimpose protein coordinates, accounting for insertions and deletions. J. Appl. Crystallogr. 1997 (1997) 1160-1161
5. DeLano W.L. The PYMOL Molecular Graphics System (2002), DeLano Scientific, San Carlos, CA
6. Gouet P., Robert X., and Courcelle E. ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res. 31 (2003) 3320-3323
7. Hogle J.M., Maeda A., and Harrison S.C. Structure and assembly of turnip crinkle virus. I. X-ray crystallographic structure analysis at 3.2 Å resolution. J. Mol. Biol. 191 (1986) 625-638
8. Hsu C., Singh P., Ochoa W., Manayani D.J., Manchester M., Schneemann A., and Reddy V.S. Characterization of polymorphism displayed by the coat protein mutants of tomato bushy stunt virus. Virology 349 (2006) 222-229
9. Hui E., and Rochon D. Evaluation of the roles of specific regions of the Cucumber necrosis virus coat protein in particle accumulation and fungus transmission. J. Virol. 80 (2006) 5968-5975
10. Johnson J.E., and Speir J.A. Quasi-equivalent viruses: a paradigm for protein assemblies. J. Mol. Biol. 269 (1997) 665-675
11. Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr., A 47 (1991) 110-119
12. Kakani K., Reade R., and Rochon D. Evidence that vector transmission of a plant virus requires conformational change in virus particles. J. Mol. Biol. 338 (2004) 507-517
13. Ke J., Schmidt T., Chase E., Bozarth R.F., and Smith T.J. Structure of Cowpea mottle virus: a consensus in the genus Carmovirus. Virology 321 (2004) 349-358
14. Konagurthu A.S., Whisstock J.C., Stuckey P.J., and Lesk A.M. MUSTANG: a multiple structural alignment algorithm. Proteins 64 (2006) 559-574
15. Krol M.A., Olson N.H., Tate J., Johnson J.E., Baker T.S., and Ahlquist P. RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 13650-13655
16. Laskowski R.A., Moss D.S., and Thornton J.M. Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231 (1993) 1049-1067
17. Lokesh G.L., Gowri T.D., Satheshkumar P.S., Murthy M.R.N., and Savithri H.S. A molecular switch in the capsid protein controls the particle polymorphism in an icosahedral virus. Virology 292 (2002) 211-223
18. Morgunova E., Dauter Z., Fry E., Stuart D.I., Stel'mashchuk V., Mikhailov A.M., Wilson K.S., and Vainshtein B.K. The atomic structure of Carnation mottle virus capsid protein. FEBS Lett. 338 (1994) 267-271
19. Oda Y., Saeki K., Takahashi Y., Maeda T., Naitow H., Tsukihara T., and Fukuyama K. Crystal structure of tobacco necrosis virus at 2.25 Å resolution. J. Mol. Biol. 300 (2000) 153-169
20. Olson A.J., Bricogne G., and Harrison S.C. Structure of tomato busy stunt virus IV. The virus particle at 2.9 Å resolution. J. Mol. Biol. 171 (1983) 61-93
21. Otwinowsky Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
22. Qu C., Liljas L., Opalka N., Brugidou C., Yeager M., Beachy R.N., Fauquet C.M., Johnson J.E., and Lin T. 3D domain swapping modulates the stability of members of an icosahedral virus group. Structure 8 (2000) 1095-1103
23. Ramachandran G.N., and Sasisekharan V. Conformation of polypeptides and proteins. Adv. Protein Chem. 23 (1968) 283-438
24. Rossmann M.G., Abad-Zapatero C., Murthy M.R.N., Liljas L., Jones T.A., and Strandberg B. Structural comparisons of some small spherical plant viruses. J. Mol. Biol. 165 (1983) 711-736
25. Sangita V., Lokesh G.L., Satheshkumar P.S., Saravanan V., Vijay C.S., Savithri H.S., and Murthy M.R.N. Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants. Acta Crystallogr., D 61 (2005) 1402-1405
26. Sangita V., Lokesh G.L., Satheshkumar P.S., Vijay C.S., Saravanan V., Savithri H.S., and Murthy M.R.N. T = 1 capsid structures of Sesbania mosaic virus coat protein mutants: Determinants of T = 3 and T = 1 capsid assembly. J. Mol. Biol. 342 (2004) 987-999
27. Satheshkumar P.S., Lokesh G.L., Murthy M.R.N., and Savithri H.S. The role of arginine-rich motif and beta-annulus in the assembly and stability of Sesbania mosaic virus capsids. J. Mol. Biol. 353 (2005) 447-458
28. Sorger P.K., Stockley P.G., and Harrison S.C. Structure and assembly of turnip crinkle virus. II. Mechanism of reassembly in vitro. J. Mol. Biol 191 (1986) 639-658
29. Speir J.A., Munshi S., Wang G., Baker T.S., and Johnson J.E. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy. Structure 3 (1995) 63-78
30. Tamm T., and Truve E. Sobemoviruses. J. Virol. 74 (2000) 6231-6241
31. Tars K., Zeltins A., and Liljas L. The three-dimensional structure of cocksfoot mottle virus at 2.7 Å resolution. Virology 310 (2003) 287-297
32. Tong L., and Rossmann M.G. The locked rotation function. Acta Crystallogr., A 46 (1990) 783-792
33. Willits D., Zhao X., Olson N., Baker T.S., Zlotnick A., Johnson J.E., Douglas T., and Young M.J. Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly. Virology 306 (2003) 280-288
34. Zlotnick A., Aldrich R., Johnson J.M., Ceres P., and Young M.J. Mechanism of capsid assembly for an icosahedral plant virus. Virology 277 (2000) 450-456