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Volumn 415, Issue 1-2, 2008, Pages 13-22

A novel SINE family occurs frequently in both genomic DNA and transcribed sequences in ixodid ticks of the arthropod sub-phylum Chelicerata

Author keywords

Boophilus; Ixodes; Retroposon; Rhipicephalus; Short interspersed repetitive element; tRNA derived

Indexed keywords

SERINE TRANSFER RNA; TRANSFER RNA;

EID: 42649132446     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.01.026     Document Type: Article
Times cited : (16)

References (41)
  • 2
    • 42649115499 scopus 로고    scopus 로고
    • Applied Biosystems, 2003. (Available: www.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdf) [Accessed November 2007].
    • Applied Biosystems, 2003. (Available: www.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdf) [Accessed November 2007].
  • 3
    • 14544284865 scopus 로고    scopus 로고
    • Systematics and evolution of ticks with a list of valid genus and species nwww.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdfames
    • Suppl
    • Barker S.C., and Murrell A. Systematics and evolution of ticks with a list of valid genus and species nwww.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdfames. Parasitology 129 (2004) S15-S36 Suppl
    • (2004) Parasitology , vol.129
    • Barker, S.C.1    Murrell, A.2
  • 4
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27 (1999) 573-580
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 5
    • 0037108322 scopus 로고    scopus 로고
    • A ubiquitous and conserved signal for RNA localization in chordates
    • Betley N.J., Frith M.C., Graber J.H., Choo S., and Deshler J.O. A ubiquitous and conserved signal for RNA localization in chordates. Curr. Biol. 12 (2002) 1756-1761
    • (2002) Curr. Biol. , vol.12 , pp. 1756-1761
    • Betley, N.J.1    Frith, M.C.2    Graber, J.H.3    Choo, S.4    Deshler, J.O.5
  • 6
    • 27744438186 scopus 로고    scopus 로고
    • Ticks have R2 retrotransposons but not the consensus transposon target site of other arthropods
    • Bunikis J., and Barbour A.G. Ticks have R2 retrotransposons but not the consensus transposon target site of other arthropods. Ins. Mol. Biol. 14 (2005) 465-474
    • (2005) Ins. Mol. Biol. , vol.14 , pp. 465-474
    • Bunikis, J.1    Barbour, A.G.2
  • 7
    • 0042121237 scopus 로고    scopus 로고
    • Multiple sequence alignment with the Clustal series of programs
    • Chenna R., et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31 (2003) 3497-3500
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3497-3500
    • Chenna, R.1
  • 9
    • 0030849487 scopus 로고    scopus 로고
    • Sustainable tick and tick-borne disease control in livestock improvement in developing countries
    • De Castro J. Sustainable tick and tick-borne disease control in livestock improvement in developing countries. Vet. Parasitol. 17 (1997) 77-97
    • (1997) Vet. Parasitol. , vol.17 , pp. 77-97
    • De Castro, J.1
  • 10
    • 34447328415 scopus 로고    scopus 로고
    • Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus
    • Desjardins C., et al. Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus. BMC Microbiol 7 (2007) 61-78
    • (2007) BMC Microbiol , vol.7 , pp. 61-78
    • Desjardins, C.1
  • 11
    • 17144453021 scopus 로고    scopus 로고
    • Polyadenylation of rRNA and tRNA-based yeast transcripts cleaved by ribozyme activity
    • Duvel K., Pries R., and Braus G.H. Polyadenylation of rRNA and tRNA-based yeast transcripts cleaved by ribozyme activity. Curr. Genet. 43 (2003) 255-262
    • (2003) Curr. Genet. , vol.43 , pp. 255-262
    • Duvel, K.1    Pries, R.2    Braus, G.H.3
  • 12
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 15
    • 17844399599 scopus 로고    scopus 로고
    • BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick
    • Guerrero F.D., et al. BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick. Insect Biochem. Mol. Biol. 35 (2005) 585-595
    • (2005) Insect Biochem. Mol. Biol. , vol.35 , pp. 585-595
    • Guerrero, F.D.1
  • 16
    • 16844371922 scopus 로고    scopus 로고
    • The global importance of ticks
    • Jongejan F., and Uilenberg G. The global importance of ticks. Parasitol. 129 (2004) S3-S14
    • (2004) Parasitol. , vol.129
    • Jongejan, F.1    Uilenberg, G.2
  • 17
    • 0034117358 scopus 로고    scopus 로고
    • Dotlet: diagonal plots in a web browser
    • Junier T., and Pagni M. Dotlet: diagonal plots in a web browser. Bioinformatics 16 (2000) 178-179
    • (2000) Bioinformatics , vol.16 , pp. 178-179
    • Junier, T.1    Pagni, M.2
  • 18
    • 0012341115 scopus 로고    scopus 로고
    • The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
    • RESEARCH0084
    • Kaminker J.S., et al. The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol. 3 (2002) RESEARCH0084
    • (2002) Genome Biol. , vol.3
    • Kaminker, J.S.1
  • 19
    • 0036021699 scopus 로고    scopus 로고
    • Transposable elements and the evolution of genome size in eukaryotes
    • Kidwell M.G. Transposable elements and the evolution of genome size in eukaryotes. Genetica 115 (2002) 49-63
    • (2002) Genetica , vol.115 , pp. 49-63
    • Kidwell, M.G.1
  • 21
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 22
    • 14544284865 scopus 로고    scopus 로고
    • Systematics and evolution of ticks with a list of valid genus and species names
    • Murrell A., and Barker S.C. Systematics and evolution of ticks with a list of valid genus and species names. Parasitology 129 (2004) S15-S36
    • (2004) Parasitology , vol.129
    • Murrell, A.1    Barker, S.C.2
  • 23
    • 0036830252 scopus 로고    scopus 로고
    • AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum
    • Nene V., et al. AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum. Int. J. Parasitol. 32 (2002) 1447-1456
    • (2002) Int. J. Parasitol. , vol.32 , pp. 1447-1456
    • Nene, V.1
  • 24
    • 4744339475 scopus 로고    scopus 로고
    • Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva
    • Nene V., et al. Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva. Insect Biochem. Mol. Biol. 34 (2004) 1117-1128
    • (2004) Insect Biochem. Mol. Biol. , vol.34 , pp. 1117-1128
    • Nene, V.1
  • 25
    • 0001414578 scopus 로고
    • SINEs: short interspersed repeated elements of the eukaryotic genome
    • Okada N. SINEs: short interspersed repeated elements of the eukaryotic genome. Trends Ecol. Evol. 6 (1991) 358-361
    • (1991) Trends Ecol. Evol. , vol.6 , pp. 358-361
    • Okada, N.1
  • 26
    • 0031593205 scopus 로고    scopus 로고
    • SINEs and LINEs share common 3′ sequences: a review
    • Okada N., Hamada M., Ogiwara I., and Ohshima K. SINEs and LINEs share common 3′ sequences: a review. Gene, 205 (1997) 229-243
    • (1997) Gene , vol.205 , pp. 229-243
    • Okada, N.1    Hamada, M.2    Ogiwara, I.3    Ohshima, K.4
  • 27
    • 0028370593 scopus 로고
    • Genome size and organization in the ixodid tick Amblyomma americanum (L.)
    • Palmer M.J., Bantle J.A., Guo X., and Fargo W.S. Genome size and organization in the ixodid tick Amblyomma americanum (L.). Insect Mol. Biol. 3 (1994) 57-62
    • (1994) Insect Mol. Biol. , vol.3 , pp. 57-62
    • Palmer, M.J.1    Bantle, J.A.2    Guo, X.3    Fargo, W.S.4
  • 28
    • 0034635568 scopus 로고    scopus 로고
    • Evidence for DNA loss as a determinant of genome size
    • Petrov D.A., Sangster T.A., Johnston J.S., Hartl D.L., and Shaw K.L. Evidence for DNA loss as a determinant of genome size. Science 287 5455 (2000) 1060-1062
    • (2000) Science , vol.287 , Issue.5455 , pp. 1060-1062
    • Petrov, D.A.1    Sangster, T.A.2    Johnston, J.S.3    Hartl, D.L.4    Shaw, K.L.5
  • 29
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: reconstruction and representation of expressed gene sequences
    • Quackenbush J., Liang F., Holt I., Pertea G., and Upton J. The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res. 28 (2000) 141-145
    • (2000) Nucleic Acids Res. , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 30
    • 0035165581 scopus 로고    scopus 로고
    • The TIGR gene indices: analysis of gene transcript sequences in highly sampled eukaryotic species
    • Quackenbush J., et al. The TIGR gene indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res. 29 (2001) 159-164
    • (2001) Nucleic Acids Res. , vol.29 , pp. 159-164
    • Quackenbush, J.1
  • 31
    • 31144434085 scopus 로고    scopus 로고
    • An annotated catalog of salivary gland transcripts from Ixodes scapularis ticks
    • Ribeiro J.M.C., et al. An annotated catalog of salivary gland transcripts from Ixodes scapularis ticks. Insect Biochem. Mol. Biol. 36 (2006) 111-129
    • (2006) Insect Biochem. Mol. Biol. , vol.36 , pp. 111-129
    • Ribeiro, J.M.C.1
  • 33
    • 0033964296 scopus 로고    scopus 로고
    • SINE insertions: powerful tools for molecular systematics
    • Shedlock A.M., and Okada N. SINE insertions: powerful tools for molecular systematics. BioEssays 22 (2000) 148-160
    • (2000) BioEssays , vol.22 , pp. 148-160
    • Shedlock, A.M.1    Okada, N.2
  • 34
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T.F., and Waterman M.S. Identification of common molecular subsequences. J. Mol. Biol. 147 (1981) 195-197
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 35
    • 32144444851 scopus 로고    scopus 로고
    • TRAP: automated classification, quantification and annotation of tandemly repeated sequences
    • Sobreira T.J.P., Durham A.M., and Gruber A. TRAP: automated classification, quantification and annotation of tandemly repeated sequences. Bioinformatics 22 (2006) 361-362
    • (2006) Bioinformatics , vol.22 , pp. 361-362
    • Sobreira, T.J.P.1    Durham, A.M.2    Gruber, A.3
  • 36
    • 42649145139 scopus 로고    scopus 로고
    • The Gene Index Databases, Dana Farber Cancer Institute, Boston, MA 02115 (Available: http://biocomp.dfci.harvard.edu/tgi/tgipage.html) [Accessed July 2007].
    • The Gene Index Databases, Dana Farber Cancer Institute, Boston, MA 02115 (Available: http://biocomp.dfci.harvard.edu/tgi/tgipage.html) [Accessed July 2007].
  • 37
    • 0032975069 scopus 로고    scopus 로고
    • Genomic and evolutionary analysis of Feilai, a diverse family of highly reiterated SINEs in the yellow fever mosquito
    • Tu Z. Genomic and evolutionary analysis of Feilai, a diverse family of highly reiterated SINEs in the yellow fever mosquito. Mol. Biol. Evol. 16 (1999) 760-772
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 760-772
    • Tu, Z.1
  • 38
    • 11244303622 scopus 로고    scopus 로고
    • The changing tails of a novel short interspersed element in Ædes ægypti
    • Tu Z., Li S., and Mao C. The changing tails of a novel short interspersed element in Ædes ægypti. Genetics 168 (2004) 2037-2047
    • (2004) Genetics , vol.168 , pp. 2037-2047
    • Tu, Z.1    Li, S.2    Mao, C.3
  • 39
    • 17444363029 scopus 로고    scopus 로고
    • Genome size and organization in the blacklegged tick, Ixodes scapularis and the Southern cattle tick, Boophilus microplus
    • Ullmann A.J., Lima C.M.R., Guerrero F.D., Piesman J., and Black W.C. Genome size and organization in the blacklegged tick, Ixodes scapularis and the Southern cattle tick, Boophilus microplus. Insect Mol. Biol. 14 (2005) 217-222
    • (2005) Insect Mol. Biol. , vol.14 , pp. 217-222
    • Ullmann, A.J.1    Lima, C.M.R.2    Guerrero, F.D.3    Piesman, J.4    Black, W.C.5
  • 40
    • 0021127698 scopus 로고
    • Alu sequences are processed 7SL RNA genes
    • Ullu E., and Tschudi C. Alu sequences are processed 7SL RNA genes. Nature 312 (1984) 171-172
    • (1984) Nature , vol.312 , pp. 171-172
    • Ullu, E.1    Tschudi, C.2
  • 41
    • 7444271429 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements at the centromere
    • Wong L.H., and Choo K.H.A. Evolutionary dynamics of transposable elements at the centromere. Trends Genet. 20 (2004) 611-616
    • (2004) Trends Genet. , vol.20 , pp. 611-616
    • Wong, L.H.1    Choo, K.H.A.2


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