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Volumn 377, Issue 1, 2008, Pages 24-32

Analysis and interpretation of two-dimensional single-particle tracking microscopy measurements: Effect of local surface roughness

Author keywords

Cell membrane; Diffusion constant estimation; Surface roughness

Indexed keywords

CELL MEMBRANES; CYTOLOGY; DIFFUSION; MOLECULES;

EID: 42649128706     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2008.02.019     Document Type: Article
Times cited : (19)

References (46)
  • 1
    • 0021937004 scopus 로고
    • ‘New Observations of Cell Architecture and Dynamics by Video Enhanced Contrast Optical Microscopy’
    • R. Day Allen ‘New Observations of Cell Architecture and Dynamics by Video Enhanced Contrast Optical Microscopy’ Annu. Rev. Biophys. Biophys. Chem. 14 1985 265 290
    • (1985) Annu. Rev. Biophys. Biophys. Chem. , vol.14 , pp. 265-290
    • Day Allen, R.1
  • 2
    • 0037278247 scopus 로고    scopus 로고
    • ‘Single Particle Tracking Image Microscopy’
    • K. Ritchie A. Kusumi ‘Single Particle Tracking Image Microscopy’ Methods Enzymol. 360 2003 618 634
    • (2003) Methods Enzymol. , vol.360 , pp. 618-634
    • Ritchie, K.1    Kusumi, A.2
  • 3
    • 33846110291 scopus 로고    scopus 로고
    • ‘Imaging Single Molecules in Living Cells for Systems Biology’
    • Y. Sako ‘Imaging Single Molecules in Living Cells for Systems Biology’ Mol. Syst. Biol. 2 2006 56
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 56
    • Sako, Y.1
  • 4
    • 85120262156 scopus 로고    scopus 로고
    • ‘Introduction to Statistical Mechanics’
    • R. Bowley M. Sanchez ‘Introduction to Statistical Mechanics’ 2nd ed. 2003 Oxford University Press
    • (2003)
    • Bowley, R.1    Sanchez, M.2
  • 5
    • 0030956033 scopus 로고    scopus 로고
    • ‘Single Particle Tracking: Applications to Membrane Dynamics’
    • M.J. Saxton K. Jacobson ‘Single Particle Tracking: Applications to Membrane Dynamics’ Annu. Rev. Biophys. Biomol. Struct. 26 1997 373 399
    • (1997) Annu. Rev. Biophys. Biomol. Struct. , vol.26 , pp. 373-399
    • Saxton, M.J.1    Jacobson, K.2
  • 9
    • 85120269732 scopus 로고    scopus 로고
    • ‘Modulation of Lateral Diffusion in the Membrane by Protein Density’
    • M. Frick K. Schmidt B.J. Nicholls ‘Modulation of Lateral Diffusion in the Membrane by Protein Density’ Curr. Biol. 17 2007 427 462
    • (2007) Curr. Biol. , vol.17 , pp. 427-462
    • Frick, M.1    Schmidt, K.2    Nicholls, B.J.3
  • 11
    • 33748520215 scopus 로고    scopus 로고
    • ‘Stochastic simulation of chemical reactions with spatial resolution and single molecule detail’
    • S.S. Andrews D. Bray ‘Stochastic simulation of chemical reactions with spatial resolution and single molecule detail’ Phys. Biol. 1 2004 137 151
    • (2004) Phys. Biol. , vol.1 , pp. 137-151
    • Andrews, S.S.1    Bray, D.2
  • 12
    • 0021119618 scopus 로고
    • ‘Optical Sectioning Microscopy: Cellular Architecture in Three Dimensions’
    • D.A. Agard ‘Optical Sectioning Microscopy: Cellular Architecture in Three Dimensions’ AnnU. Rev. Biophys. Biophys. Chem. 13 1984 191 219
    • (1984) AnnU. Rev. Biophys. Biophys. Chem. , vol.13 , pp. 191-219
    • Agard, D.A.1
  • 13
    • 0003554627 scopus 로고    scopus 로고
    • ‘Video Microscopy. The Fundamentals’
    • S. Inoue K.R. Spring ‘Video Microscopy. The Fundamentals’ 2nd ed. 1997 Plenum Press New York and London Chapter 1
    • (1997)
    • Inoue, S.1    Spring, K.R.2
  • 14
    • 85120283426 scopus 로고    scopus 로고
    • M. Vrljic, S.Y. Nishimura, and W.E. Moerner, ‘Strengths and Weaknesses of Single-Molecule Tracking’. Biophysical Society Discussions Book. ‘Probing Membrane Micro-domains’ 2004.
  • 17
    • 0026053736 scopus 로고
    • Lateral Diffusion and Retrograde Movements of Individual Cell Surface Components on Single Motile Cells Observed with Nanovid Microscopy’
    • M. de Brabander R. Nuydens A. Ishihara B. Holifield K. Jacobsen H. Geerts Lateral Diffusion and Retrograde Movements of Individual Cell Surface Components on Single Motile Cells Observed with Nanovid Microscopy’ J. Cell Biol. 112 1991 111 124
    • (1991) J. Cell Biol. , vol.112 , pp. 111-124
    • de Brabander, M.1    Nuydens, R.2    Ishihara, A.3    Holifield, B.4    Jacobsen, K.5    Geerts, H.6
  • 19
    • 0034817343 scopus 로고    scopus 로고
    • ‘Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles’
    • M.K. Cheezum W.F. Walker W.H. Guilford ‘Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles’ Biophys. J. 81 2001 2378 2388
    • (2001) Biophys. J. , vol.81 , pp. 2378-2388
    • Cheezum, M.K.1    Walker, W.F.2    Guilford, W.H.3
  • 20
    • 1142291717 scopus 로고    scopus 로고
    • ‘Localization Accuracy in Single Molecule Microscopy’
    • R.J. Ober S. Ram E. Sally Ward ‘Localization Accuracy in Single Molecule Microscopy’ Biophys. J. 86 2004 1185 1200
    • (2004) Biophys. J. , vol.86 , pp. 1185-1200
    • Ober, R.J.1    Ram, S.2    Sally Ward, E.3
  • 21
    • 0003993399 scopus 로고
    • ‘The Theory of the Microscope’
    • L.C. Martin ‘The Theory of the Microscope’ 1966 American Elsevier New York Section 2
    • (1966)
    • Martin, L.C.1
  • 22
    • 0004033487 scopus 로고
    • ‘Microscope Photometry’
    • H. Piller ‘Microscope Photometry’ 1977 Springer-Verlag Berlin Section 2
    • (1977)
    • Piller, H.1
  • 23
    • 17844364513 scopus 로고    scopus 로고
    • ‘Paradigm Shift of the Plasma Membrane Concept from the Two-dimensional continuum fluid to the partitioned fluid: High-Speed Single-Molecule Tracking of Membrane Molecules
    • A. Kusumi C. Nakada K. Ritchie K. Murase K. Suzuki H. Murakoshi R.S. Kasai J. Kondo T. Fujiwara ‘Paradigm Shift of the Plasma Membrane Concept from the Two-dimensional continuum fluid to the partitioned fluid: High-Speed Single-Molecule Tracking of Membrane Molecules Annu. Rev. Biophys. Biomol. Struct. 34 2005 351 378
    • (2005) Annu. Rev. Biophys. Biomol. Struct. , vol.34 , pp. 351-378
    • Kusumi, A.1    Nakada, C.2    Ritchie, K.3    Murase, K.4    Suzuki, K.5    Murakoshi, H.6    Kasai, R.S.7    Kondo, J.8    Fujiwara, T.9
  • 24
    • 0024090481 scopus 로고
    • ‘Random Number Generators: Good Ones Are Hard to Find’
    • S.K. Park K.W. Miller ‘Random Number Generators: Good Ones Are Hard to Find’ Commun. ACM 31 1988 1192 1201
    • (1988) Commun. ACM , vol.31 , pp. 1192-1201
    • Park, S.K.1    Miller, K.W.2
  • 26
    • 0004171561 scopus 로고    scopus 로고
    • ‘Brownian Motion and Stochastic Calculus’
    • I. Karatsas S. Shreve ‘Brownian Motion and Stochastic Calculus’ 2nd ed. 1997 Springer-Verlag
    • (1997)
    • Karatsas, I.1    Shreve, S.2
  • 27
    • 0014668756 scopus 로고
    • ‘Deformation of Red Blood Cells in Capilaries’
    • R. Skalak P. Branemark ‘Deformation of Red Blood Cells in Capilaries’ Science 164 1969 717 719
    • (1969) Science , vol.164 , pp. 717-719
    • Skalak, R.1    Branemark, P.2
  • 28
    • 0035069134 scopus 로고    scopus 로고
    • ‘Molecular Basis of Mechanotransduction in Living Cells’
    • O.P. Hamill B. Martinac ‘Molecular Basis of Mechanotransduction in Living Cells’ Physiol. Rev. 81 2001 685 740
    • (2001) Physiol. Rev. , vol.81 , pp. 685-740
    • Hamill, O.P.1    Martinac, B.2
  • 29
    • 0032071364 scopus 로고    scopus 로고
    • ‘Mechanical Properties of a Model Membrane Studied from Shape Transformations of Giant Vesicles’
    • P. Meleard C. Gerbeaud P. Bardusco N. Jeandaine M.D. Mitov L. Fernandez-Puente ‘Mechanical Properties of a Model Membrane Studied from Shape Transformations of Giant Vesicles’ Biochimie 80 1998 401 413
    • (1998) Biochimie , vol.80 , pp. 401-413
    • Meleard, P.1    Gerbeaud, C.2    Bardusco, P.3    Jeandaine, N.4    Mitov, M.D.5    Fernandez-Puente, L.6
  • 30
    • 0028040663 scopus 로고
    • ‘A novel Microplate Method for Measuring the Bending Modulus of Vesicle Membranes’
    • D.V. Zhelev D. Needham R.H. Hochmuth ‘A novel Microplate Method for Measuring the Bending Modulus of Vesicle Membranes’ Biophys. J. 67 1994 720 727
    • (1994) Biophys. J. , vol.67 , pp. 720-727
    • Zhelev, D.V.1    Needham, D.2    Hochmuth, R.H.3
  • 31
    • 33846056461 scopus 로고    scopus 로고
    • ‘Plasma Membrane Sterol Distribution Resembles the Surface Topography of Living Cells’
    • D. Wüstner ‘Plasma Membrane Sterol Distribution Resembles the Surface Topography of Living Cells’ Mol. Biol. Cell 18 2007 211 228
    • (2007) Mol. Biol. Cell , vol.18 , pp. 211-228
    • Wüstner, D.1
  • 32
    • 27244439049 scopus 로고    scopus 로고
    • ‘Dynamic Simulations of Membranes with Cytoskeletal Interactions’
    • L.C.L. Lin F.H. Brown ‘Dynamic Simulations of Membranes with Cytoskeletal Interactions’ Phys. Rev. E. 72 2005 011910
    • (2005) Phys. Rev. E. , vol.72 , pp. 011910
    • Lin, L.C.L.1    Brown, F.H.2
  • 33
    • 33846700656 scopus 로고    scopus 로고
    • ‘Structure of Symmetric and Asymmetric Ripple Phases in Lipid Bilayers’
    • O. Lenz F. Schmid ‘Structure of Symmetric and Asymmetric Ripple Phases in Lipid Bilayers’ Phys. Rev. Lett. 98 2007 058104
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 058104
    • Lenz, O.1    Schmid, F.2
  • 34
    • 0037054546 scopus 로고    scopus 로고
    • ‘Phospholipids undergo hop diffusion in compartmentalized cell membrane’
    • T. Fujiwara K. Ritchie H. Murakoshi K. Jacobson A. Kusumi ‘Phospholipids undergo hop diffusion in compartmentalized cell membrane’ J. Cell Biol. 157 2002 1071 1081
    • (2002) J. Cell Biol. , vol.157 , pp. 1071-1081
    • Fujiwara, T.1    Ritchie, K.2    Murakoshi, H.3    Jacobson, K.4    Kusumi, A.5
  • 35
    • 17844389341 scopus 로고    scopus 로고
    • ‘Rapid hop diffusion of a G-protein-coupled receptor in the plasma membrane as revealed by single-molecule techniques’
    • K. Suzuki K. Ritchie E. Kajikawa T. Fujiwara A. Kusumi ‘Rapid hop diffusion of a G-protein-coupled receptor in the plasma membrane as revealed by single-molecule techniques’ Biophys. J. 88 2005 3659 3680
    • (2005) Biophys. J. , vol.88 , pp. 3659-3680
    • Suzuki, K.1    Ritchie, K.2    Kajikawa, E.3    Fujiwara, T.4    Kusumi, A.5
  • 36
    • 0024651474 scopus 로고
    • ‘Lateral diffusion of membrane proteins in protein-rich membranes. A simple hard particle model for concentration dependence of the two-dimensional diffusion coefficient’
    • A.P. Minton ‘Lateral diffusion of membrane proteins in protein-rich membranes. A simple hard particle model for concentration dependence of the two-dimensional diffusion coefficient’ Biophys. J. 55 1989 805 808
    • (1989) Biophys. J. , vol.55 , pp. 805-808
    • Minton, A.P.1
  • 37
    • 1842432088 scopus 로고    scopus 로고
    • ‘Molecular dynamics and interactions for creation of stimulation-induced stabilized rafts from small unstable steady-state rafts’
    • A. Kusumi I. Koyama-Honda K. Suzuki ‘Molecular dynamics and interactions for creation of stimulation-induced stabilized rafts from small unstable steady-state rafts’ Traffic 5 2004 213 230
    • (2004) Traffic , vol.5 , pp. 213-230
    • Kusumi, A.1    Koyama-Honda, I.2    Suzuki, K.3
  • 38
    • 33646179555 scopus 로고    scopus 로고
    • ‘Simulations of (An)Isotropic Diffusion on Curved Biological Surfaces’
    • I.F. Sbalzarini A. Hayer A. Helenius P. Koumoutsakos ‘Simulations of (An)Isotropic Diffusion on Curved Biological Surfaces’ Biophys. J. 90 2006 878 885
    • (2006) Biophys. J. , vol.90 , pp. 878-885
    • Sbalzarini, I.F.1    Hayer, A.2    Helenius, A.3    Koumoutsakos, P.4
  • 39
    • 33645787528 scopus 로고    scopus 로고
    • ‘Diffusion in Curved Fluid Membranes’
    • N.S. Gov ‘Diffusion in Curved Fluid Membranes’ Phys. Rev. E. 73 2006 041918
    • (2006) Phys. Rev. E. , vol.73 , pp. 041918
    • Gov, N.S.1
  • 40
    • 24344473426 scopus 로고    scopus 로고
    • ‘Lateral Diffusion of a Protein on a Fluctuating Membrane’
    • E. Reister U. Seifert ‘Lateral Diffusion of a Protein on a Fluctuating Membrane’ Europhys. Lett. 71 2005 859 865
    • (2005) Europhys. Lett. , vol.71 , pp. 859-865
    • Reister, E.1    Seifert, U.2
  • 41
    • 0034173075 scopus 로고    scopus 로고
    • ‘Spatial Curvature Effects on Molecular Transport by Diffusion’
    • J. Balakrishnan ‘Spatial Curvature Effects on Molecular Transport by Diffusion’ Phys. Rev. E. 61 2000 4648
    • (2000) Phys. Rev. E. , vol.61 , pp. 4648
    • Balakrishnan, J.1
  • 42
    • 0020144768 scopus 로고
    • 2 ‘Diffusion of molecules on biological membranes of nonplanar form. A theoretical study
    • B.M. Aizenbud N.D. Gershon 2 ‘Diffusion of molecules on biological membranes of nonplanar form. A theoretical study Biophys. J. 38 1987 287 293
    • (1987) Biophys. J. , vol.38 , pp. 287-293
    • Aizenbud, B.M.1    Gershon, N.D.2
  • 43
    • 0022137173 scopus 로고
    • ‘Diffusion of molecules on biological membranes of nonplanar form. II. Diffusion anisotropy,’
    • B.M. Aizenbud N.D. Gershon ‘Diffusion of molecules on biological membranes of nonplanar form. II. Diffusion anisotropy,’ Biophys. J. 48 1985 543 546
    • (1985) Biophys. J. , vol.48 , pp. 543-546
    • Aizenbud, B.M.1    Gershon, N.D.2
  • 44
    • 0034805503 scopus 로고    scopus 로고
    • ‘Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study’
    • M.J. Saxton ‘Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study’ Biophys. J. 81 2001 2226 2240
    • (2001) Biophys. J. , vol.81 , pp. 2226-2240
    • Saxton, M.J.1
  • 46
    • 0037763871 scopus 로고    scopus 로고
    • ‘Anomalous protein diffusion in living cells as seen by fluorescence correlation spectroscopy’
    • M. Weiss H. Hashimoto T. Nilsson ‘Anomalous protein diffusion in living cells as seen by fluorescence correlation spectroscopy’ Biophys. J. 84 2003 4043 4052
    • (2003) Biophys. J. , vol.84 , pp. 4043-4052
    • Weiss, M.1    Hashimoto, H.2    Nilsson, T.3


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