-
1
-
-
33751525325
-
Array-based comparative genomic hybridization and copy number variation in cancer research
-
Cho EK, Tchinda J, Freeman JL, Chung YJ, Cai WW, Lee C. Array-based comparative genomic hybridization and copy number variation in cancer research. Cytogenet Genome Res 2006; 115:262-72.
-
(2006)
Cytogenet Genome Res
, vol.115
, pp. 262-272
-
-
Cho, E.K.1
Tchinda, J.2
Freeman, J.L.3
Chung, Y.J.4
Cai, W.W.5
Lee, C.6
-
3
-
-
33751194901
-
Application of array-based comparative genomic hybridization to clinical diagnostics
-
Bejjani BA, Shaffer LG. Application of array-based comparative genomic hybridization to clinical diagnostics. J Mol Diagn 2006; 8(5):528-33.
-
(2006)
J Mol Diagn
, vol.8
, Issue.5
, pp. 528-533
-
-
Bejjani, B.A.1
Shaffer, L.G.2
-
5
-
-
23444459574
-
Array CGH technologies and their applications to cancer genomes
-
Davies JJ, Wilson IM, Lam WL. Array CGH technologies and their applications to cancer genomes. Chromosome Res 2005; 13(3):237-48.
-
(2005)
Chromosome Res
, vol.13
, Issue.3
, pp. 237-248
-
-
Davies, J.J.1
Wilson, I.M.2
Lam, W.L.3
-
6
-
-
9444222468
-
Microarray-based comparative genomic hybridization and its applications in human genetics
-
Oostlander AE, Meijer GA, Ylstra B. Microarray-based comparative genomic hybridization and its applications in human genetics. Clin Genet 2004; 66(6):488-95.
-
(2004)
Clin Genet
, vol.66
, Issue.6
, pp. 488-495
-
-
Oostlander, A.E.1
Meijer, G.A.2
Ylstra, B.3
-
7
-
-
33845356420
-
Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
-
Ordway JM, Bedell JA, Citek RW, Nunberg A, Garrido A, Kendall R, Stevens JR, Cao D, Doerge RW, Korshunova Y, Holemon H, McPherson JD, Lakey N, Leon J, Martienssen RA, Jeddeloh JA. Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis 2006; 27:2409-23.
-
(2006)
Carcinogenesis
, vol.27
, pp. 2409-2423
-
-
Ordway, J.M.1
Bedell, J.A.2
Citek, R.W.3
Nunberg, A.4
Garrido, A.5
Kendall, R.6
Stevens, J.R.7
Cao, D.8
Doerge, R.W.9
Korshunova, Y.10
Holemon, H.11
McPherson, J.D.12
Lakey, N.13
Leon, J.14
Martienssen, R.A.15
Jeddeloh, J.A.16
-
8
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins RA, Haghighi F, Edwards JR, Das R, Zhang MQ, Ju J, Bestor TH. Large-scale structure of genomic methylation patterns. Genome Res 2006; 16:157-63.
-
(2006)
Genome Res
, vol.16
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
Das, R.4
Zhang, M.Q.5
Ju, J.6
Bestor, T.H.7
-
9
-
-
0036270889
-
ChIP-chip: A genomic approach for identifying transcription factor binding sites
-
Horak CE, Snyder M. ChIP-chip: a genomic approach for identifying transcription factor binding sites. Methods Enzymol 2002; 350:469-83.
-
(2002)
Methods Enzymol
, vol.350
, pp. 469-483
-
-
Horak, C.E.1
Snyder, M.2
-
10
-
-
1242316281
-
ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 2004; 83:349-60.
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
11
-
-
33750906569
-
DNA microarray analysis of pulmonary fibrosis three months after exposure to paraquat in rats
-
Satomi Y, Tsuchiya W, Miura D, Kasahara Y, Akahori F. DNA microarray analysis of pulmonary fibrosis three months after exposure to paraquat in rats. J Toxicol Sci 2006; 31:345-55.
-
(2006)
J Toxicol Sci
, vol.31
, pp. 345-355
-
-
Satomi, Y.1
Tsuchiya, W.2
Miura, D.3
Kasahara, Y.4
Akahori, F.5
-
12
-
-
33644873360
-
Temporal cDNA microarray analysis of gene expression in human hepatocellular carcinoma upon radiation exposure
-
Jeong J, Hong SJ, Ju YJ, Kim BY, Park MJ, Kim TH, Park CI, Choi KY, Cho MH, Kim SH, Lee H, Lee KH. Temporal cDNA microarray analysis of gene expression in human hepatocellular carcinoma upon radiation exposure. Oncol Rep 2006; 15:33-48.
-
(2006)
Oncol Rep
, vol.15
, pp. 33-48
-
-
Jeong, J.1
Hong, S.J.2
Ju, Y.J.3
Kim, B.Y.4
Park, M.J.5
Kim, T.H.6
Park, C.I.7
Choi, K.Y.8
Cho, M.H.9
Kim, S.H.10
Lee, H.11
Lee, K.H.12
-
13
-
-
33846706577
-
Investigation of the molecular profile of basal cell carcinoma using whole genome microarrays
-
O'Driscoll L, McMorrow J, Doolan P, McKiernan E, Mehta JP, Ryan E, Gammell P, Joyce H, O'Donovan N, Walsh N, Clynes M. Investigation of the molecular profile of basal cell carcinoma using whole genome microarrays. Mol Cancer 2006; 5:74-80.
-
(2006)
Mol Cancer
, vol.5
, pp. 74-80
-
-
O'Driscoll, L.1
McMorrow, J.2
Doolan, P.3
McKiernan, E.4
Mehta, J.P.5
Ryan, E.6
Gammell, P.7
Joyce, H.8
O'Donovan, N.9
Walsh, N.10
Clynes, M.11
-
14
-
-
33846784074
-
Microarrays in breast cancer research and clinical practice - the future lies ahead
-
Gruvberger-Saal SK, Cunliffe HE, Carr KM, Hedenfalk IA. Microarrays in breast cancer research and clinical practice - the future lies ahead. Endocr Relat Cancer 2006; 13(4):1017-31.
-
(2006)
Endocr Relat Cancer
, vol.13
, Issue.4
, pp. 1017-1031
-
-
Gruvberger-Saal, S.K.1
Cunliffe, H.E.2
Carr, K.M.3
Hedenfalk, I.A.4
-
15
-
-
33750341417
-
Gene expression profiles of primary breast carcinomas from patients at high risk for local recurrence after breast-conserving therapy
-
Kreike B, Halfwerk H, Kristel P, Glas A, Peterse H, Bartelink H, van de Vijver MJ. Gene expression profiles of primary breast carcinomas from patients at high risk for local recurrence after breast-conserving therapy. Clin Cancer Res 2006; 12:5705-12.
-
(2006)
Clin Cancer Res
, vol.12
, pp. 5705-5712
-
-
Kreike, B.1
Halfwerk, H.2
Kristel, P.3
Glas, A.4
Peterse, H.5
Bartelink, H.6
van de Vijver, M.J.7
-
16
-
-
33845525187
-
Expression profile of ovarian tumors: Distinct signature of Sertoli-Leydig cell tumor
-
Baranova A, Gowder S, Naouar S, King S, Schlauch K, Jarrar M, Ding Y, Cook B, Chandhoke V, Christensen A. Expression profile of ovarian tumors: distinct signature of Sertoli-Leydig cell tumor. Int J Gynecol Cancer 2006; 16:1963-72.
-
(2006)
Int J Gynecol Cancer
, vol.16
, pp. 1963-1972
-
-
Baranova, A.1
Gowder, S.2
Naouar, S.3
King, S.4
Schlauch, K.5
Jarrar, M.6
Ding, Y.7
Cook, B.8
Chandhoke, V.9
Christensen, A.10
-
17
-
-
33748469397
-
Acute leukemia: Subtype discovery and prediction of outcome by gene expression profiling
-
Downing JR. Acute leukemia: subtype discovery and prediction of outcome by gene expression profiling, Verh Dtsch Ges Pathol 2003; 87:66-71.
-
(2003)
Verh Dtsch Ges Pathol
, vol.87
, pp. 66-71
-
-
Downing, J.R.1
-
18
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh EJ, Ross ME, Shurtleff SA, Williams WK, Patel D, Mahfouz R, Behm FG, Raimondi SC, Relling MV, Patel A, Cheng C, Campana D, Wilkins D, Zhou X, Li J, Liu H, Pui CH, Evans WE, Naeve C, Wong L, Downing JR. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 2002; 1:133-43.
-
(2002)
Cancer Cell
, vol.1
, pp. 133-143
-
-
Yeoh, E.J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
Mahfouz, R.6
Behm, F.G.7
Raimondi, S.C.8
Relling, M.V.9
Patel, A.10
Cheng, C.11
Campana, D.12
Wilkins, D.13
Zhou, X.14
Li, J.15
Liu, H.16
Pui, C.H.17
Evans, W.E.18
Naeve, C.19
Wong, L.20
Downing, J.R.21
more..
-
19
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein Lonning P, Borresen-Dale AL. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications, Proc Natl Acad Sci USA 2001; 98: 10869-74.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
van de Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Eystein Lonning, P.16
Borresen-Dale, A.L.17
-
20
-
-
33847629949
-
Dynamic changes in gene expression profiles of 22q11 and related orthologous genes during mouse development
-
Amati F, Biancolella M, Farcomeni A, Giallonardi S, Bueno S, Minella D, Vecchione L, Chillemi G, Desideri A, Novelli G. Dynamic changes in gene expression profiles of 22q11 and related orthologous genes during mouse development, Gene 2007; 391: 91-102.
-
(2007)
Gene
, vol.391
, pp. 91-102
-
-
Amati, F.1
Biancolella, M.2
Farcomeni, A.3
Giallonardi, S.4
Bueno, S.5
Minella, D.6
Vecchione, L.7
Chillemi, G.8
Desideri, A.9
Novelli, G.10
-
21
-
-
33750633646
-
A biphasic pattern of gene expression during mouse retina development
-
Zhang SS, Xu X, Liu MG, Zhao H, Soares MB, Barnstable CJ, Fu XY. A biphasic pattern of gene expression during mouse retina development. BMC Dev Biol. 2006; 6:48.
-
(2006)
BMC Dev Biol
, vol.6
, pp. 48
-
-
Zhang, S.S.1
Xu, X.2
Liu, M.G.3
Zhao, H.4
Soares, M.B.5
Barnstable, C.J.6
Fu, X.Y.7
-
22
-
-
34249785105
-
A Microarray Analysis of the Temporal Response of Liver to Methylprednisolone: A Comparative Analysis of Two Dosing Regimens
-
Almon RR, Dubois DC, Jusko WJ. A Microarray Analysis of the Temporal Response of Liver to Methylprednisolone: A Comparative Analysis of Two Dosing Regimens, Endocrinology 2007; 148: 2209-25.
-
(2007)
Endocrinology
, vol.148
, pp. 2209-2225
-
-
Almon, R.R.1
Dubois, D.C.2
Jusko, W.J.3
-
23
-
-
34247221543
-
Circadian oscillation of gene expression in murine calvarial bone
-
Zvonic S, Ptitsyn AA, Kilroy G, Wu X, Conrad SA, Scott LK, Guilak F, Pelled G, Gazit D, Gimble JM. Circadian oscillation of gene expression in murine calvarial bone. J Bone Miner Res 2007; 22:357-65.
-
(2007)
J Bone Miner Res
, vol.22
, pp. 357-365
-
-
Zvonic, S.1
Ptitsyn, A.A.2
Kilroy, G.3
Wu, X.4
Conrad, S.A.5
Scott, L.K.6
Guilak, F.7
Pelled, G.8
Gazit, D.9
Gimble, J.M.10
-
24
-
-
33845950511
-
Gefitinib-related gene signature in bladder cancer cells identified by a cDNA microarray
-
Inoue R, Matsuyama H, Yano S, Yamamoto Y, Iizuka N, Naito K. Gefitinib-related gene signature in bladder cancer cells identified by a cDNA microarray. Anticancer Res 2006; 26(6B):4195-202.
-
(2006)
Anticancer Res
, vol.26
, Issue.6 B
, pp. 4195-4202
-
-
Inoue, R.1
Matsuyama, H.2
Yano, S.3
Yamamoto, Y.4
Iizuka, N.5
Naito, K.6
-
25
-
-
27144459430
-
Gene expression profile associated with response to doxorubicin-based therapy in breast cancer
-
Folgueira MA, Carraro DM, Brentani H et al. Gene expression profile associated with response to doxorubicin-based therapy in breast cancer. Clin Cancer Res 2005; 11:7434-43.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 7434-7443
-
-
Folgueira, M.A.1
Carraro, D.M.2
Brentani, H.3
-
26
-
-
24344444819
-
Gene expression patterns and profile changes pre- and post-erlotinib treatment in patients with metastatic breast cancer
-
Yang SX, Simon RM, Tan AR, Nguyen D, Swain SM. Gene expression patterns and profile changes pre- and post-erlotinib treatment in patients with metastatic breast cancer. Clin Cancer Res 2005; 11: 6226-32.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 6226-6232
-
-
Yang, S.X.1
Simon, R.M.2
Tan, A.R.3
Nguyen, D.4
Swain, S.M.5
-
27
-
-
33846681611
-
Clinical utility of microarray-derived genetic signatures in predicting outcomes in prostate cancer
-
Reddy GK, Balk SP. Clinical utility of microarray-derived genetic signatures in predicting outcomes in prostate cancer. Clin Genitourin Cancer 2006; 5(3): 187-9.
-
(2006)
Clin Genitourin Cancer
, vol.5
, Issue.3
, pp. 187-189
-
-
Reddy, G.K.1
Balk, S.P.2
-
28
-
-
30444436907
-
Gene expression profiling of nonneoplastic mucosa may predict clinical outcome of colon cancer patients
-
Barrier A, Boelle PY, Lemoine A, Tse C, Brault D, Chiappini F, Lacaine F, Houry S, Huguier M, Flahault A, Dudoit S. Gene expression profiling of nonneoplastic mucosa may predict clinical outcome of colon cancer patients. Dis Colon Rectum 2005; 48: 2238-48.
-
(2005)
Dis Colon Rectum
, vol.48
, pp. 2238-2248
-
-
Barrier, A.1
Boelle, P.Y.2
Lemoine, A.3
Tse, C.4
Brault, D.5
Chiappini, F.6
Lacaine, F.7
Houry, S.8
Huguier, M.9
Flahault, A.10
Dudoit, S.11
-
29
-
-
0038244058
-
Gene expression predictors of breast cancer outcomes
-
Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, Horng CF, Bild A, Iversen ES, Liao M, Chen CM, West M, Nevins JR, Huang AT. Gene expression predictors of breast cancer outcomes. Lancet. 2003; 361(9369):1590-6.
-
(2003)
Lancet
, vol.361
, Issue.9369
, pp. 1590-1596
-
-
Huang, E.1
Cheng, S.H.2
Dressman, H.3
Pittman, J.4
Tsou, M.H.5
Horng, C.F.6
Bild, A.7
Iversen, E.S.8
Liao, M.9
Chen, C.M.10
West, M.11
Nevins, J.R.12
Huang, A.T.13
-
30
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
Dupuy A, Simon RM. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 2007; 99(2):147-57.
-
(2007)
J Natl Cancer Inst
, vol.99
, Issue.2
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.M.2
-
31
-
-
13444249852
-
Prediction of cancer outcome with microarrays: A multiple random validation strategy
-
Michiels S, Koscielny S, Hill C. Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 2005; 365(9458):488-92.
-
(2005)
Lancet
, vol.365
, Issue.9458
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
32
-
-
8444225398
-
Interpretation of expression-profiling results obtained from different platforms and tissue sources: Examples using prostate cancer data
-
Chiorino G, Acquadro F, Mello Grand M, Viscomi S, Segir R, Gasparini M, Dotto P. Interpretation of expression-profiling results obtained from different platforms and tissue sources: examples using prostate cancer data. Eur J Cancer 2004; 40:2592-603.
-
(2004)
Eur J Cancer
, vol.40
, pp. 2592-2603
-
-
Chiorino, G.1
Acquadro, F.2
Mello Grand, M.3
Viscomi, S.4
Segir, R.5
Gasparini, M.6
Dotto, P.7
-
33
-
-
33744804832
-
Comparison of the latest commercial short and long oligonucleotide microarray technologies
-
de Reynies A, Geromin D, Cayuela JM, Petel F, Dessen P, Sigaux F, Rickman DS. Comparison of the latest commercial short and long oligonucleotide microarray technologies. BMC Genomics 2006; 7:51.
-
(2006)
BMC Genomics
, vol.7
, pp. 51
-
-
de Reynies, A.1
Geromin, D.2
Cayuela, J.M.3
Petel, F.4
Dessen, P.5
Sigaux, F.6
Rickman, D.S.7
-
34
-
-
33748491718
-
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project
-
Patterson TA, Lobenhofer EK, Fulmer-Smentek SB et al. Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project. Nat Biotechnol 2006; 24: 1140-50.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1140-1150
-
-
Patterson, T.A.1
Lobenhofer, E.K.2
Fulmer-Smentek, S.B.3
-
35
-
-
33746108159
-
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
-
Kuo WP, Liu F, Trimarchi J, et al. A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat Biotechnol 2006; 24:832-40.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 832-840
-
-
Kuo, W.P.1
Liu, F.2
Trimarchi, J.3
-
36
-
-
1542469713
-
Measurement of gene expression in archival paraffin-embedded tissues: Development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay
-
Cronin M, Pho M, Dutta D, Stephans JC, Shak S, Kiefer MC, Esteban JM, Baker JB. Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am J Pathol 2004; 164:35-42.
-
(2004)
Am J Pathol
, vol.164
, pp. 35-42
-
-
Cronin, M.1
Pho, M.2
Dutta, D.3
Stephans, J.C.4
Shak, S.5
Kiefer, M.C.6
Esteban, J.M.7
Baker, J.B.8
-
37
-
-
0035134463
-
Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue
-
Specht K, Richter T, Muller U, Walch A, Werner M, Hofler H. Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue. Am J Pathol 2001; 158:419-29.
-
(2001)
Am J Pathol
, vol.158
, pp. 419-429
-
-
Specht, K.1
Richter, T.2
Muller, U.3
Walch, A.4
Werner, M.5
Hofler, H.6
-
38
-
-
33646240135
-
Two-dimensional transcriptome profiling: Identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens
-
Li HR, Wang-Rodriguez J, Nair TM et al. Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Res 2006; 66:4079-88.
-
(2006)
Cancer Res
, vol.66
, pp. 4079-4088
-
-
Li, H.R.1
Wang-Rodriguez, J.2
Nair, T.M.3
-
39
-
-
33845759906
-
Comparative analysis of a 3′ end tag PCR and a linear RNA amplification approach for microarray analysis
-
Laurell C, Wirta V, Nilsson P, Lundeberg J. Comparative analysis of a 3′ end tag PCR and a linear RNA amplification approach for microarray analysis. J Biotechnol 2007; 127: 638-46.
-
(2007)
J Biotechnol
, vol.127
, pp. 638-646
-
-
Laurell, C.1
Wirta, V.2
Nilsson, P.3
Lundeberg, J.4
-
40
-
-
33744549560
-
In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays
-
Ma C, Lyons-Weiler M, Liang W, LaFramboise W, Gilbertson JR, Becich MJ, Monzon FA. In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays. J Mol Diagn 2006; 8:183-92.
-
(2006)
J Mol Diagn
, vol.8
, pp. 183-192
-
-
Ma, C.1
Lyons-Weiler, M.2
Liang, W.3
LaFramboise, W.4
Gilbertson, J.R.5
Becich, M.J.6
Monzon, F.A.7
-
41
-
-
25444531467
-
Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays
-
Wadenback J, Clapham DH, Craig D, Sederoff R, Peter GF, von Arnold S, Egertsdotter U. Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays. BMC Genomics 2005; 6:61.
-
(2005)
BMC Genomics
, vol.6
, pp. 61
-
-
Wadenback, J.1
Clapham, D.H.2
Craig, D.3
Sederoff, R.4
Peter, G.F.5
von Arnold, S.6
Egertsdotter, U.7
-
42
-
-
0035559859
-
Universal Linkage System: Versatile nucleic acid labeling technique
-
van Gijlswijk RP, Talman EG, Janssen PJ, Snoeijers SS, Killian J, Tanke HJ, Heetebrij RJ. Universal Linkage System: versatile nucleic acid labeling technique. Expert Rev Mol Diagn 2001; 1:81-91.
-
(2001)
Expert Rev Mol Diagn
, vol.1
, pp. 81-91
-
-
van Gijlswijk, R.P.1
Talman, E.G.2
Janssen, P.J.3
Snoeijers, S.S.4
Killian, J.5
Tanke, H.J.6
Heetebrij, R.J.7
-
43
-
-
33846986793
-
Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
-
Stalteri MA, Harrison AP. Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. BMC Bioinformatics 2007; 8:13.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 13
-
-
Stalteri, M.A.1
Harrison, A.P.2
-
45
-
-
20144386497
-
Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays
-
Stolc V, Samanta MP, Tongprasit W et al. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proc Natl Acad Sci USA 2005; 102:4453-8.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 4453-4458
-
-
Stolc, V.1
Samanta, M.P.2
Tongprasit, W.3
-
46
-
-
26444502673
-
A microarray configuration to quantify expression levels and relative abundance of splice variants
-
Fehlbaum P, Guihal C, Bracco L, Cochet O. A microarray configuration to quantify expression levels and relative abundance of splice variants. Nucl Acids Res 2005; 33:e47.
-
(2005)
Nucl Acids Res
, vol.33
-
-
Fehlbaum, P.1
Guihal, C.2
Bracco, L.3
Cochet, O.4
-
47
-
-
33747344944
-
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
-
Jeffery IB et al. Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinformatics. 2006; 7:359-366.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 359-366
-
-
Jeffery, I.B.1
-
48
-
-
0028220393
-
Advances in statistical methodology for the evaluation of diagnostic and laboratory tests
-
Chambell G. Advances in statistical methodology for the evaluation of diagnostic and laboratory tests. Statistics in Medicine 1994; 13:499-508.
-
(1994)
Statistics in Medicine
, vol.13
, pp. 499-508
-
-
Chambell, G.1
-
49
-
-
14044252027
-
Multiple testing. Part I. Single-step procedures for control of general type I error rates
-
Dudoit S, van der Laan MJ, Pollard KS. "Multiple testing. Part I. Single-step procedures for control of general type I error rates." Stat Appl Genet Mol Biol 2004; 3:13-21.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 13-21
-
-
Dudoit, S.1
van der Laan, M.J.2
Pollard, K.S.3
-
50
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:3-9.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 3-9
-
-
Smyth, G.K.1
-
51
-
-
0037294213
-
Receiver operating characteristic analysis: A general tool for DNA array data filtration and performance estimation
-
Khodarev NN, Park J, Kataoka Y, Nodzenski E, Hellman S, Roizman B, Weichselbaum RR, Pelizzari CA. Receiver operating characteristic analysis: a general tool for DNA array data filtration and performance estimation. Genomics 2003; 81: 202-9.
-
(2003)
Genomics
, vol.81
, pp. 202-209
-
-
Khodarev, N.N.1
Park, J.2
Kataoka, Y.3
Nodzenski, E.4
Hellman, S.5
Roizman, B.6
Weichselbaum, R.R.7
Pelizzari, C.A.8
-
54
-
-
0029355897
-
Establishing a human transcript map
-
Boguski MS, Schuler GD. "Establishing a human transcript map." Nat Genet 1995; 10:369-371.
-
(1995)
Nat Genet
, vol.10
, pp. 369-371
-
-
Boguski, M.S.1
Schuler, G.D.2
-
55
-
-
0037252705
-
Database Resources of the National Center for Biotechnology
-
Wheeler DL et al. Database Resources of the National Center for Biotechnology. Nucl Acids Res 2003; 31:28-33.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 28-33
-
-
Wheeler, D.L.1
-
56
-
-
33750713346
-
GeneTools - application for functional annotation and statistical hypothesis testing
-
Beisvag V et al. GeneTools - application for functional annotation and statistical hypothesis testing. BMC Bioinformatics 2006; 7:470-77.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 470-477
-
-
Beisvag, V.1
-
57
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A. The Universal Protein Resource (UniProt). Nucl Acids Res 2005; 33:D154-159.
-
(2005)
Nucl Acids Res
, vol.33
-
-
Bairoch, A.1
-
58
-
-
6044271269
-
Juggling between evolution and stability
-
Bairoch A. Swiss-Prot: Juggling between evolution and stability. Brief Bioinform 2004; 5:39-55.
-
(2004)
Brief Bioinform
, vol.5
, pp. 39-55
-
-
Bairoch, A.1
Prot, S.2
-
59
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005; 102:15545-50.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
60
-
-
24644470505
-
Ontological analysis of gene expression data: Current tools, limitations, and open problems
-
Khatri P, Draghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 2005; 21:3587-95.
-
(2005)
Bioinformatics
, vol.21
, pp. 3587-3595
-
-
Khatri, P.1
Draghici, S.2
-
61
-
-
33845884027
-
Integrative molecular concept modelling of prostate cancer progression
-
Tomlins SA, Mehra R, Rhodes DR et al. Integrative molecular concept modelling of prostate cancer progression. Nat Genet 2007; 39:41-51.
-
(2007)
Nat Genet
, vol.39
, pp. 41-51
-
-
Tomlins, S.A.1
Mehra, R.2
Rhodes, D.R.3
-
62
-
-
1642377561
-
ONCOMINE: A cancer microarray database and integrated data-mining platform
-
Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM. ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia 2004; 6:1-6.
-
(2004)
Neoplasia
, vol.6
, pp. 1-6
-
-
Rhodes, D.R.1
Yu, J.2
Shanker, K.3
Deshpande, N.4
Varambally, R.5
Ghosh, D.6
Barrette, T.7
Pandey, A.8
Chinnaiyan, A.M.9
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