Near full-length genomic analysis of a novel subtype A1/C recombinant HIV type 1 isolate from Canada

AIDS Research and Human Retroviruses

Volumn 24, Issue 4, 2008, Pages 655-659

  Ntemgwa, Michel ^a,b   Toni, Thomas D'Aquin ^a,b   Brenner, Bluma G ^a   Routy, Jean Pierre ^c   Moisi, Daniela ^a   Oliveira, Maureen ^a   Wainberg, Mark A ^a,b,d  

^a MCGILL UNIVERSITY   (Canada)

^b MCGILL UNIVERSITY   (Canada)

^c MCGILL UNIVERSITY HEALTH CENTRE   (Canada)

^d MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIRETROVIRUS AGENT; PROTEINASE; RNA DIRECTED DNA POLYMERASE; VIRUS RNA;

ANTIBIOTIC RESISTANCE; ARTICLE; CANADA; GENETIC ANALYSIS; GENETIC RECOMBINATION; GENOME; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRUCTURAL GENE; VIRUS LOAD; VIRUS RECOMBINANT; VIRUS STRAIN;

GENOME, VIRAL; HIV INFECTIONS; HIV-1; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POL GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; QUEBEC; RECOMBINATION, GENETIC;

EID: 42449133377     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2007.0282     Document Type: Article

References (15)

1. Simon F, Mauclere P, Roques P, et al.: Identification of a new human immunodeficiency virus type 1 distinct from group M and group O. Nat Med 1998;4:1032-1037.
2. Luk KC, Holzmayer V, Yamaguchi J, et al.: Near full-length genome characterization of three additional HIV type 1 CRF13_cpx strains from Cameroon. AIDS Res Hum Retroviruses 2007;23:297-302.
3. Thomson MM and Najera R: Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: An update. AIDS Rev 2005;7:210-224.
4. de Baar MP, van der Schoot AM, Goudsmit J, et al.: Design and evaluation of a human immunodeficiency virus type 1 RNA assay using nucleic acid sequence-based amplification technology able to quantify both group M and O viruses by using the long terminal repeat as target. J Clin Microbiol 1999;37:1813-1818.
5. Winters MA, Shafer RW, Jellinger RA, Mamtora G, Gingeras T, and Merigan TC: Human immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years. Antimicrob Agents Chemother 1997;41:757-762.
6. Montavon C, Toure-Kane C, Nkengasong JN, et al.: CRF06-cpx: A new circulating recombinant form of HIV-1 in West Africa involving subtypes A, G, K, and J. J Acquir Immune Defic Syndr 2002;29:522-530.
7. Vergne L, Diagbouga S, Kouanfack C, et al.: HIV-1 drug-resistance mutations among newly diagnosed patients before scaling-up programmes in Burkina Faso and Cameroon. Antivir Ther 2006;11:575-579.
8. Swanson P, Devare SG, and Hackett J Jr: Full-length sequence analysis of HIV-1 isolate CM237: A CRF01_AE/B intersubtype recombinant from Thailand. AIDS Res Hum Retroviruses 2003;19:707-712.
9. Delwart EL, Shpaer EG, Louwagie J, et al.: Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science 1993;262:1257-1261.
10. Swanson P, Huang S, Holzmayer V, et al.: Performance of the automated Abbott RealTime HIV-1 assay on a genetically diverse panel of specimens from Brazil. J Virol Methods 2006;134:237-243.
11. De Baar MP, De Ronde A, Berkhout B, et al.: Subtype-specific sequence variation of the HIV type 1 long terminal repeat and primerbinding site. AIDS Res Hum Retroviruses 2000;16:499-504.
12. Gao F, Morrison SG, Robertson DL, et al.: Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization. J Virol 1996;70:1651-1667.
13. Schultz AK, Zhang M, Leitner T, et al.: A jumping profile hidden Markov model and applications to recombination sites in HIV and HCV genomes. BMC Bioinformatics 2006;7:265.
14. Zhang M, Schultz AK, Calef C, et al.: jpHMM at GOBICS: A web server to detect genomic recombinations in HIV-1. Nucleic Acids Res 2006;34:W463-465.
15. Gao F, Robertson DL, Carruthers CD, et al.: A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1. J Virol 1998;72:5680-5698.