Recombination within mouse t haplotypes has replaced significant segments of t-specific DNA

Mammalian Genome

Volumn 19, Issue 4, 2008, Pages 263-271

  Wallace, Lyle T ^a,b   Erhart, Mark A ^a  

^a CHICAGO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; FGD2 GENE; GENE; GENE AMPLIFICATION; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GEOGRAPHIC ORIGIN; HAPLOTYPE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION SITE; SEQUENCE ANALYSIS; T HAPLOTYPE; WILD TYPE;

ANIMALS; BASE SEQUENCE; CHROMOSOMES, MAMMALIAN; GENOME; GUANINE NUCLEOTIDE EXCHANGE FACTORS; HAPLOTYPES; MALE; MICE; MICE, INBRED STRAINS; MICROTUBULE-ASSOCIATED PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA;

MUS;

EID: 42449119785     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-008-9103-3     Document Type: Article

References (36)

1. Artzt K, Barlow D, Dove WF, Fischer-Lindahl K, Klein J et al (1991) Mouse chromosome 17. Mamm Genome 1 Spec No:S280-S300
2. Bauer H, Veron N, Willert J, Koschorz B, Herrmann BG (2007) The t-complex-encoded guanine nucleotide exchange factor Fgd2 reveals that two opposing signaling pathways promote transmission ratio distortion in the mouse. Genes Dev 21(2):143-147
3. Bennett D (1975) The T-locus of the mouse. Cell 6:441-454
4. Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27(2):573-580. Available at http://c3.biomath.mssm. edu/trf.submit.options.html
5. Bucan M, Herrmann BG, Frischauf AM, Bautch VL, Bode V et al (1987) Deletion and duplication of DNA sequences is associated with the embryonic lethal phenotype of the t9 complementation group of the mouse t complex. Genes Dev 1:376-385
6. Chovnick A (1973) Gene conversion and transfer of genetic information within the inverted region of inversion heterozygotes. Genetics 75:123-131
7. Curtis D, Clark SH, Chovnick A, Bender W (1989) Molecular analysis of recombination events in Drosophila. Genetics 122:653-661
8. 0: a history of a mutation. EMBO J 3:1647-1654
9. Ebersole T, Lai F, Artzt K (1992) New molecular markers for the distal end of the t-complex and their relationships to mutations affecting mouse development. Genetics 131:175-182
10. Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA, members of the Mouse Genome Database Group (2005) The Mouse Genome Database (MGD): from genes to mice-a community resource for mouse biology. Nucleic Acids Res 33:D471-D475. Available at http://www.infomatics.jax.org/
11. Erhart MA, Phillips SJ, Bonhomme F, Boursout P, Wakeland EK et al (1989) Haplotypes that are mosaic for wild-type and t complex-specific alleles in wild mice. Genetics 12:405-415
12. Erhart MA, Lekgothoane S, Grenier J, Nadeau JH (2002) Pattern of segmental recombination in the distal inversion of mouse t haplotypes. Mamm Genome 13:438-444
13. Hall T (1997) BioEdit version 7.0.0. Available at http://www.mbio.ncsu. edu/BioEdit/bioedit.html. Accessed 15 Aug 2007
14. Hammer MF, Silver LM (1993) Phylogenetic analysis of the alpha-globin pseudogene-4 (Hba-ps4) locus in the house mouse species complex reveals a stepwise evolution of t haplotypes. Mol Biol Evol 10:971-1001
15. Hammer MF, Bliss S, Silver LM (1991) Genetic exchange across a paracentric inversion of the mouse t complex. Genetics 128:799-812
16. Heiman M (1997) Webcutter version 2.0. Available at http://www.rna. lundberg.gu.se/cutter2/
17. Huang SW, Ardlie KG, Yu HT (2001) Frequency and distribution of t-haplotypes in the southeast asian house mouse (Mus musculus castaneus) in Taiwan. Mol Ecol 10:2349-2354
18. Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M et al (2007) Ensembl 2007. Nucleic Acids Res 35(database issue):D610-D617. Available at http://www.ensembl.org/Mus_musculus/
19. Jensen-Seaman MI, Furey TS, Payseur BA, Lu Y, Roskin KM et al (2004) Comparative recombination rates in the rat, mouse, and human genomes. Genome Res 14(4):528-538
20. Kumar S, Subramanian S (2002) Mutation rates in mammalian genomes. Proc Natl Acad Sci USA 99:803-808
21. Lyon MF (1984) Transmission ratio distortion in mouse t-haplotypes is due to multiple distorter genes acting on a responder locus. Cell 37:621-628
22. Lyon MF (2003) Transmission ratio distortion in mice. Ann Rev Genet 37:393-408
23. Morita T, Kubota H, Murata K, Nozaki M, Delarbre C et al (1992) Evolution of the mouse t haplotype: recent and worldwide introgression to Mus musculus. Proc Natl Acad Sci USA 89:6851-6855
24. Nadeau JH, Phillips SJ (1987) The putative oncogene Pim-1 in the mouse: its linkage and variation among t haplotypes. Genetics 117:533-541
25. Navarro A, Betran E, Barbadilla A, Ruiz A (1997) Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes. Genetics 146:695-709
26. Neufeld E, Vincek V, Figueroa F, Klein J (1991) Limits of the distal inversion in the t complex of the house mouse: evidence from linkage disequilibria. Mamm Genome 1:242-248
27. Novitski E, Braver G (1954) An analysis of crossing over within a heterozygous inversion in Drosophila melanogaster. Genetics 39:197-209
28. Perkins DD (1962) Crossing-over and interference in a multiply marked chromosome arm of Neurospora. Genetics 47:1253-1274
29. Phillips SJ, Nadeau JH (1984) Personal communication. Mouse Newslett 70:83
30. Rozas J, Aguade M (1994) Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc Natl Acad Sci USA 91:11517-11521
31. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmer. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp 365-386. Available at http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi
32. Schaeffer SW, Anderson WW (2005) Mechanisms of genetic exchange within the chromosomal inversions of Drosophila pseudoobscura. Genetics 171:1729-1739
33. Silver LM (1990) Gene dosage effects on transmission ratio distortion and fertility in mice that carry t haplotypes. Genet Res 54:221-225
34. Silver L (1993) The peculiar journey of a selfish chromosome: mouse t haplotypes and meiotic drive. Trends Genet 9:250-254
35. Silver LM, Remis D (1987) Five of the nine genetically defined regions of mouse t haplotypes are involved in transmission ratio distortion. Genet Res 49:51-56
36. Skow LC, Nadeau JN, Ahn JC, Shin HS, Artzt K et al (1987) Polymorphism and linkage of the A-crystallin gene in t-haplotypes of the mouse. Genetics 116:107-111