메뉴 건너뛰기




Volumn 31, Issue 5, 2004, Pages 455-458

Application of hidden semi-markov model to 3′ splice sites identification

Author keywords

EM algorithm; Eukaryotic gene structure prediction; Hidden Semi Markov Model; Splicing

Indexed keywords

ACCURACY; ARTICLE; COMPUTER MODEL; EXON; GENE IDENTIFICATION; GENE LOCUS; GENE STRUCTURE; INTERMETHOD COMPARISON; METHODOLOGY; PROBABILITY; RNA SPLICING; STATISTICAL MODEL; TRANSLATION INITIATION;

EID: 4243162068     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (1)

References (17)
  • 1
    • 0035002807 scopus 로고    scopus 로고
    • Evaluation of gene-finding programs on mammalian sequences
    • Rogic S, Mackworth A K, Ouellette F B. Evaluation of gene-finding programs on mammalian sequences. Genome Research, 2001, 11 (5): 817-832
    • (2001) Genome Research , vol.11 , Issue.5 , pp. 817-832
    • Rogic, S.1    Mackworth, A.K.2    Ouellette, F.B.3
  • 2
    • 0036679565 scopus 로고    scopus 로고
    • Improving gene recognition accuracy by combining predictions from two gene-finding programs
    • Rogic S, Ouellette B F, Mackworth A K. Improving gene recognition accuracy by combining predictions from two gene-finding programs. Bioinformatics, 2002, 18 (8): 1034-1045
    • (2002) Bioinformatics , vol.18 , Issue.8 , pp. 1034-1045
    • Rogic, S.1    Ouellette, B.F.2    Mackworth, A.K.3
  • 3
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol, 1997, 268 (1): 78-94
    • (1997) J Mol Biol , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 5
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner L R. A tutorial on hidden Markov models and selected applications in speech recognition. Proceedings of the IEEE, 1989, 77 (2): 257-286
    • (1989) Proceedings of the IEEE , vol.77 , Issue.2 , pp. 257-286
    • Rabiner, L.R.1
  • 7
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • Gesteland R F, Cech T R, Atkins J F, eds. New York: Cold Spring Harbor Laboratory Press
    • Burge C, Tuschl T, Sharp P A. Splicing of precursors to mRNAs by the spliceosomes. In: Gesteland R F, Cech T R, Atkins J F, eds. The RNA World. 2nd. New York: Cold Spring Harbor Laboratory Press, 1999. 525-560
    • (1999) The RNA World. 2nd , pp. 525-560
    • Burge, C.1    Tuschl, T.2    Sharp, P.A.3
  • 8
    • 0022516779 scopus 로고
    • A role for exon sequences and splice-site proximity in splice-site selection
    • Reed R, Maniatis T. A role for exon sequences and splice-site proximity in splice-site selection. Cell, 1986, 46 (5): 681-690
    • (1986) Cell , vol.46 , Issue.5 , pp. 681-690
    • Reed, R.1    Maniatis, T.2
  • 9
    • 0002862339 scopus 로고
    • UACUAAC is the preferred branch site for mammalian mRNA splicing
    • Zhuang Y A, Goldstein A M, Weiner A M. UACUAAC is the preferred branch site for mammalian mRNA splicing. Proc Nat Acad Sci USA, 1989, 86 (6): 2752-2756
    • (1989) Proc Nat Acad Sci USA , vol.86 , Issue.6 , pp. 2752-2756
    • Zhuang, Y.A.1    Goldstein, A.M.2    Weiner, A.M.3
  • 10
    • 0021887989 scopus 로고
    • Intron sequences involved in lariat formation during pre-mRNA splicing
    • Reed R, Maniatis T. Intron sequences involved in lariat formation during pre-mRNA splicing. Cell, 1985, 41 (1): 95-105
    • (1985) Cell , vol.41 , Issue.1 , pp. 95-105
    • Reed, R.1    Maniatis, T.2
  • 11
    • 0023663370 scopus 로고
    • Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA
    • Parker R, Siliciano P G, Guthrie C. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA. Cell, 1987, 49 (2): 229-239
    • (1987) Cell , vol.49 , Issue.2 , pp. 229-239
    • Parker, R.1    Siliciano, P.G.2    Guthrie, C.3
  • 12
    • 0025233806 scopus 로고
    • A putative ATP binding protein influences the fidelity of branch point recognition in yeast splicing
    • Burgess S, Couto J R, Guthrie C. A putative ATP binding protein influences the fidelity of branch point recognition in yeast splicing. Cell, 1990, 60 (5): 705-717
    • (1990) Cell , vol.60 , Issue.5 , pp. 705-717
    • Burgess, S.1    Couto, J.R.2    Guthrie, C.3
  • 13
    • 0013147992 scopus 로고    scopus 로고
    • Finding genes by computer: Probabilistic and discriminative approaches
    • Jiang T, Smith T, Xu Y, Zhang M, eds. USA: The MIT Press
    • Solovyev V V. Finding genes by computer: Probabilistic and discriminative approaches. In: Jiang T, Smith T, Xu Y, Zhang M, eds. Current Topics in Computational Biology. USA: The MIT Press, 2002. 365-401
    • (2002) Current Topics in Computational Biology , pp. 365-401
    • Solovyev, V.V.1
  • 14
    • 0002629270 scopus 로고
    • Maximum-likelihood from incomplete data via the em algorithm
    • Dempster A P, Laird N M, Rubin D B. Maximum-likelihood from incomplete data via the em algorithm. J Royal Statist Soc Ser B, 1977, 39 (1): 1-38
    • (1977) J Royal Statist Soc Ser B , vol.39 , Issue.1 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 15
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of gene structure prediction programs
    • Burset M, Guigo R. Evaluation of gene structure prediction programs. Genomics, 1996, 34 (3): 353-367
    • (1996) Genomics , vol.34 , Issue.3 , pp. 353-367
    • Burset, M.1    Guigo, R.2
  • 16
    • 0035282695 scopus 로고    scopus 로고
    • GeneSplicer: A new computational method for splice site prediction
    • Pertea M, Lin X, Salzberg S L. GeneSplicer: a new computational method for splice site prediction. Nucleic Acids Res, 2001, 29 (5): 1185-1190
    • (2001) Nucleic Acids Res , vol.29 , Issue.5 , pp. 1185-1190
    • Pertea, M.1    Lin, X.2    Salzberg, S.L.3
  • 17
    • 0020531931 scopus 로고
    • Evidence for an intron-contained sequence required for the splicing of yeast RNA polymerase II transcripts
    • Langford C J, Gallwitz D. Evidence for an intron-contained sequence required for the splicing of yeast RNA polymerase II transcripts. Cell, 1983, 33 (2): 519-527
    • (1983) Cell , vol.33 , Issue.2 , pp. 519-527
    • Langford, C.J.1    Gallwitz, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.