Patterns of post-glacial colonization by western redcedar (Thuja plicata, Cupressaceae) as revealed by microsatellite markers

Botany

Volumn 86, Issue 2, 2008, Pages 194-203

  O'Connell, Lisa M ^a   Ritland, Kermit ^a   Thompson, Stacey Lee ^b,c  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

^c LAURENTIAN FORESTRY CENTRE   (Canada)

Author keywords

Genetic diversity; Mating system; Microsatellite markers; Population bottlenecks; Post glacial recolonization; Thuja plicata

Indexed keywords

BIOMARKERS; CLIMATE CHANGE; CORRELATION METHODS; GENETIC ENGINEERING;

GENETIC DIVERSITY; MATING SYSTEM; MICROSATELLITE MARKERS; POPULATION BOTTLENECKS; POST-GLACIAL RECOLONIZATION;

FORESTRY;

CLIMATE CHANGE; CONIFEROUS TREE; EVOLUTION; EXTINCTION; GENETIC MARKER; GENETIC VARIATION; HETEROZYGOSITY; INBREEDING; MIGRATION; POPULATION BOTTLENECK; POSTGLACIAL; RECOLONIZATION; REPRODUCTIVE STRATEGY;

CEDAR; FORESTRY; GENETIC ENGINEERING; MARKERS;

CUPRESSACEAE; THUJA; THUJA PLICATA;

EID: 42149109057     PISSN: 19162804     EISSN: None     Source Type: Journal    
DOI: 10.1139/B07-124     Document Type: Conference Paper

References (48)

1. Abbott, R.J., Smith, L.C., Milne, R.I., Crawford, R.M.M., Wolff, K., and Balfour, J. 2000. Molecular analysis of plant migration and refugia in the Arctic. Science (Wash.), 289: 1343-1346. doi:10.1126/science.289.5483. 1343. PMID:10958779.
2. Baker, H.G. 1955. Self compatibility and establishment of long distance dispersal. Evolution, 9: 347-349. doi:10.2307/2405656.
3. Brunsfeld, S.J., Sullivan, J., Soltis, D.E., and Soltis, P.S. 2001. Comparative phylogeography of north-western North America: a synthesis. In Intergrating ecological and evolutionary processes in a spatial context. Edited by J. Silvertown and J. Antonovics Blackwell Science, Oxford, UK. pp. 319-339.
4. Byun, S., Koop, B., and Reimchen, T. 1999. Coastal refugia and postglacial recolonization routes: a reply to Demboski, Stone, and Cook. Evolution, 53: 2013-2015. doi:10.2307/2640463.
5. Carstens, B.C., Brunsfeld, S.J., Demboski, J.R., Good, J.M., and Sullivan, J. 2005. Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework. Evolution, 59: 1639-1652. doi:10.1554/04-661. 1. PMID:16331838.
6. Casgrain, P., and Legendre, P. 2001. The R Package for multivariate and spatial analysis, version 4.0 d6-User's Manual. Département de sciences biologiques, Université de Montréal, Montréal, Que. www.fas.umontreal.ca/BIOL/legendre/
7. Charlesworth, D., and Charlesworth, B. 1987. Inbreeding depression and its evolutionary consequences. Annu. Rev. Ecol. Syst. 18: 237-268. doi:10.1146/annurev.es.18.110187.001321.
8. Cook, J.A., Dawson, N.G., and MacDonald, S.O. 2006. Conservation of highly fragmented systems: The north temperate Alexander archipelago. Biol. Conserv. 133: 1-15. doi:10.1016/j.biocon.2006.05.026.
9. Copes, D.L. 1981. Isoenzyme uniformity in western red cedar seedlings from Oregon and Washington. Can. J. For. Res. 11: 451-453. doi:10.1139/x81-060.
10. Cornuet, J.M., and Luikart, G. 1996. Description and power analysis of tow tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144: 2001-2015. PMID: 8978083.
11. Demboski, J.R., Stone, K.D., and Cook, J.A. 1999. Further perspectives on the Haida Gwaii glacial refugium. Evolution, 53: 2008-2012. doi:10.2307/2640462.
12. Doyle, J.J., and Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
13. Dyke, A. S., and Prest, V. K. 1987. Late Wisconsin and Holocene retreat of the Laurentide ice sheet. Geological Survey of Canada, Map 1702A.
14. El-Kassaby, Y.A., Russell, J., and Ritland, K. 1994. Mixed mating in an experimental population of western red cedar, Thuja plicata. J. Hered. 85: 227-231.
15. Excoffier, L., Laval, G., and Schneider, S. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1: 47-50.
16. Fazekas, A.J., and Yeh, F.C. 2006. Postglacial colonization and population genetic relationships in the Pinus contorta complex. Can. J. Bot. 84: 223-234. doi:10.1139/B05-150.
17. Glaubitz, J.C., El-Kassaby, Y.A., and Carlson, J.E. 2000. Nuclear restriction fragment length polymorphism analysis of genetic diversity in western redcedar. Can. J. For. Res. 30: 379-389. doi:10.1139/cjfr-30-3- 379.
18. Gottesfeld, A.S., Swanson, F.J., and Gottesfeld, L.M.J. 1981. A pleistocene low-elevation subalpine forest in the western cascades, Oregon. Northwest Sci. 55: 157-167.
19. Hebda, R.J., and Mathewes, R.W. 1984. Holocene history of cedar and native indian cultures of the North American Pacific Coast. Science (Wash.), 225: 711-713. doi:10.1126/science.225.4663. 711. PMID:17810290.
20. Heusser, C.J. 1985. Quaternary pollen records from the Pacific Northwest Coast: Aleutians to the Oregon-California border. In Pollen records of late-Quartenary North American sediments. Edited by J.V. Bryant and R.G. Holloway. American Association of Stratigraphic Palynologists Foundation, Dallas, Tex. pp. 141-165.
21. Hewitt, G.M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Linn. Soc. 58: 247-276. doi:10.1006/bijl.1996.0035.
22. Hewitt, G.M. 2000. The genetic legacy of the Quaternary ice ages. Nature (London), 405: 907-913. doi:10.1038/35016000. PMID: 10879524.
23. Huang, Q.-Y., Xu, F.-H., Shen, H., Deng, H.-Y., Liu, Y.-J., Liu, Y.-Z., Li, J.-L., Recker, R.R., and Deng, H.-W. 2002. Mutation patterns at dinucleotide microsatellite loci in humans. Am. J. Hum. Genet. 70: 625-634. doi:10.1086/338997. PMID:11793300.
24. Irwin, D.E. 2002. Phylogeographic breaks without barriers to gene flow. Evolution, 56: 2383-2394. PMID:12583579.
25. Kimura, M., and Crow, J.F. 1964. The number of alleles that can be maintained in a finite population. Genetics, 49: 725-738. PMID:14156929.
26. Mantel, N.A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMID:6018555.
27. Mehringer, P.J.J. 1985. Late-Quaternary pollen records from the interior Pacific Northwest and northern Great Basin of the United States. In Pollen records of late-Quartenary North American sediments. Edited by J.V. Bryant and R.G. Holloway. American Association of Stratigraphic Palynologists Foundation, Dallas, Tex. pp. 167-189.
28. Minore, D. 1990. Thuja plicata Donn ex D. Don. In Silvics of North America. Vol. 1. Conifers. Department of Agriculture Handbook 654. Edited by R.M. Burns and B.H. Honkala. United States Department of Agriculture, Washington, D.C. pp. 590-599.
29. Nei, M. 1972. Genetic distance between populations. Am. Nat. 106: 283-292. doi:10.1086/282771.
30. Nei, M., Maruyama, T., and Chakraborty, R. 1975. The bottleneck effect and genetic variability in populations. Evolution, 29: 1-10. doi:10.2307/2407137.
31. O'Connell, L.M., and Ritland, C.E. 2000. Characterization of microsatellite loci in western redcedar (Thuja plicata). Mol. Ecol. 9: 1920-1922. doi:10.1046/j.1365-294x.2000.01055-2.x. PMID:11091330.
32. O'Connell, L.M., Viard, F., Russell, J., and Ritland, K. 2001. The mating system in natural populations of western redcedar (Thuja plicata). Can. J. Bot. 79: 753-756. doi:10.1139/cjb-79-6-753.
33. O'Connell, L.M., Russell, J., and Ritland, K. 2004. Fine-scale estimation of outcrossing in western redcedar with microsatellite assay of bulked DNA. Heredity, 93: 443-449. doi:10.1038/sj.hdy. 6800521. PMID:15266296.
34. Owens, J.N., Colangeli, A.M., and Morris, S.J. 1990. The effect of self-, cross-, and no pollination on ovule, embryo, seed, and cone development in western red cedar (Thujaplicata). Can. J. For. Res. 20: 66-75.
35. Pielou, E.C. 1991. After the ice age: the return of life to glaciated North America. University of Chicago Press, Chicago, Ill.
36. Ritland, C., Pape, T., and Ritland, K. 2001. Genetic structure of yellow cedar (Chamaecyparis nootkatensis). Can. J. Bot. 79: 822-828. doi:10.1139/cjb-79-7-822.
37. Ritland, K. 1989. Genetic differentiation, diversity and inbreeding in the mountain monkeyflower (Mimulus caespitosus) of the Washington Cascades. Can. J. Bot. 67: 2017-2024. doi:10.1139/b89-255.
38. Ritland, K. 1990. Inferences about inbreeding depression based upon changes of the inbreeding coefficient. Evolution, 44: 1230-1241. doi:10.2307/2409284.
39. Russell, J.H., Burdon, R.D., and Yanchuk, A.D. 2004. Inbreeding depression and variance structures for height and adaptation in self and outcross Thuja plicata families in varying environments. For. Genet. 10: 171-185.
40. Sneath, P.H.A., and Sokal, R.R. 1973. Numerical taxonomy - the principles and practices of numerical classification. W.H. Freeman, San Fransisco, Calif.
41. Soltis, D.E., Gitzendanner, M.A., Strenge, D.D., and Soltis, P.S. 1997. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Syst. Evol. 206: 353-373. doi:10.1007/BF00987957.
42. Symonds, V.V., and Lloyd, A.M. 2003. An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics, 165: 1475-1488. PMID:14668396.
43. Thompson, S.L., and Whitton, J. 2006. Patterns of recurrent evolution and geographic parthenogenesis within apomictic polyploid Easter daisies (Townsendia hookeri). Mol. Ecol. 15: 3389-3400. doi:10.1111/j.1365-294X.2006.03020.x. PMID:16968277.
44. Thompson, S.L., Choe, G., Ritland, K., and Whitton, J. 2008. Cryptic sex within male-sterile polyploid populations of the Easter daisy, Townsendia hookeri. Int. J. Plant Sci. 169: 183-193..
45. Warner, B.G., Mathewes, R.W., and Clague, J.J. 1982. Ice-free conditions on the Queen Charlotte Islands, British Columbia, at the height of late Wisconsin glaciation. Science (Wash.), 218: 675-677. doi:10.1126/science. 218.4573.675. PMID:17791586.
46. Weir, B.S., and Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38: 1358-1370. doi:10.2307/2408641.
47. Wright, S. 1943. Isolation by distance. Genetics, 28: 114-138. PMID:17247074.
48. Yeh, F.C. 1988. Isozyme variation of Thuja plicata (Cupressaceae) in British Columbia. Biochem. Syst. Ecol. 16: 373-377. doi:10. 1016/0305-1978(88)90028-2.