메뉴 건너뛰기




Volumn 91, Issue 5, 2008, Pages 476-483

DHPC: A new tool to express genome structural features

Author keywords

Chicken; DHPC tool; Gauss smooth; GC AT skew; Genome visualization; Hilbert Peano curve; Interspersed repeat sequence; Isochore; Tetraodon; Zebrafish

Indexed keywords

DNA BASE;

EID: 42049120495     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.01.003     Document Type: Article
Times cited : (8)

References (21)
  • 1
    • 33846078622 scopus 로고    scopus 로고
    • The UCSC genome browser database: update 2007
    • Kuhn R.M., et al. The UCSC genome browser database: update 2007. Nucleic Acids Res. 35 (2006) D668-D673
    • (2006) Nucleic Acids Res. , vol.35
    • Kuhn, R.M.1
  • 2
    • 33846062023 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler D.L., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 35 (2007) D5-D12
    • (2007) Nucleic Acids Res. , vol.35
    • Wheeler, D.L.1
  • 3
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • 10.1186/1471-2105-6-2
    • Rasko D.A., Myers G.S.A., and Ravel J. Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics (2005) 10.1186/1471-2105-6-2
    • (2005) BMC Bioinformatics
    • Rasko, D.A.1    Myers, G.S.A.2    Ravel, J.3
  • 4
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • Jeffrey H.J. Chaos game representation of gene structure. Nucleic Acids Res. 18 (1990) 2163-2170
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 5
    • 33745667975 scopus 로고    scopus 로고
    • Chaos game representation for comparison of whole genomes
    • Joseph J., and Sasikumar R. Chaos game representation for comparison of whole genomes. BMC Bioinformatics 7 (2006) 243
    • (2006) BMC Bioinformatics , vol.7 , pp. 243
    • Joseph, J.1    Sasikumar, R.2
  • 6
    • 0027995001 scopus 로고
    • Z curve, an intuitive tool for visualizing and analyzing the DNA sequence
    • Zhang R., and Zhang C.T. Z curve, an intuitive tool for visualizing and analyzing the DNA sequence. J. Biomol. Struct. Dyn. 11 (1994) 767-782
    • (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.T.2
  • 7
    • 0012914683 scopus 로고    scopus 로고
    • An isochore map of the human genome based on the Z curve method
    • Zhang C.T., and Zhang R. An isochore map of the human genome based on the Z curve method. Gene 317 (2003) 127-135
    • (2003) Gene , vol.317 , pp. 127-135
    • Zhang, C.T.1    Zhang, R.2
  • 8
    • 20144380867 scopus 로고    scopus 로고
    • Identification of replication origins in archaeal genomes based on the Z-curve method
    • Zhang R., and Zhang C.T. Identification of replication origins in archaeal genomes based on the Z-curve method. Archaea 1 (2005) 335-346
    • (2005) Archaea , vol.1 , pp. 335-346
    • Zhang, R.1    Zhang, C.T.2
  • 10
    • 33750956203 scopus 로고    scopus 로고
    • Browsing repeats in genomes: Pygram and an application to non-coding region analysis
    • Durand P., Mahe F., Valin A.S., and Nicolas J. Browsing repeats in genomes: Pygram and an application to non-coding region analysis. BMC Bioinformatics 7 (2006) 477
    • (2006) BMC Bioinformatics , vol.7 , pp. 477
    • Durand, P.1    Mahe, F.2    Valin, A.S.3    Nicolas, J.4
  • 11
    • 0038131619 scopus 로고
    • Classical fractals and self-similarity
    • Springer-Verlag, New York
    • Peitgen H.O., Jürgens H., and Saupe D. Classical fractals and self-similarity. Chaos and Fractals (1992), Springer-Verlag, New York 94-105
    • (1992) Chaos and Fractals , pp. 94-105
    • Peitgen, H.O.1    Jürgens, H.2    Saupe, D.3
  • 12
    • 0029806170 scopus 로고    scopus 로고
    • Restless, an active Ac-like transposon from the fungus Tolypocladium inflatum: structure, expression, and alternative RNA splicing
    • Kempken F., and Ulrich K. Restless, an active Ac-like transposon from the fungus Tolypocladium inflatum: structure, expression, and alternative RNA splicing. Mol. Cell. Biol. 16 (1996) 6563-6572
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6563-6572
    • Kempken, F.1    Ulrich, K.2
  • 13
    • 0036317929 scopus 로고    scopus 로고
    • Structure-function analysis of the inverted terminal repeats of the Sleeping Beauty transposon
    • Cui Z., Geurts A.M., Liu G., Kaufman C.D., and Hackett P.B. Structure-function analysis of the inverted terminal repeats of the Sleeping Beauty transposon. J. Mol. Biol. 318 (2002) 1221-1235
    • (2002) J. Mol. Biol. , vol.318 , pp. 1221-1235
    • Cui, Z.1    Geurts, A.M.2    Liu, G.3    Kaufman, C.D.4    Hackett, P.B.5
  • 14
    • 17744373298 scopus 로고    scopus 로고
    • GC composition of the human genome: in search of isochores
    • Cohen N., Dagan T., Stone L., and Graur D. GC composition of the human genome: in search of isochores. Mol. Biol. Evol. 22 (2005) 1260-1272
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1260-1272
    • Cohen, N.1    Dagan, T.2    Stone, L.3    Graur, D.4
  • 17
    • 33646886862 scopus 로고    scopus 로고
    • Isochore structures in the chicken genome
    • Gao F., and Zhang C.T. Isochore structures in the chicken genome. FEBS J. 273 (2006) 1637-1648
    • (2006) FEBS J. , vol.273 , pp. 1637-1648
    • Gao, F.1    Zhang, C.T.2
  • 19
    • 24344440632 scopus 로고    scopus 로고
    • The zebrafish gene map defines ancestral vertebrate chromosomes
    • Woods I.G., et al. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 15 (2005) 1307-1314
    • (2005) Genome Res. , vol.15 , pp. 1307-1314
    • Woods, I.G.1
  • 20
    • 0041592516 scopus 로고    scopus 로고
    • Genome visualization made fast and simple
    • Gibson R., and Smith D.R. Genome visualization made fast and simple. Bioinformatics 19 (2003) 1449-1450
    • (2003) Bioinformatics , vol.19 , pp. 1449-1450
    • Gibson, R.1    Smith, D.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.