-
1
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium. The Universal Protein Resource (UniProt). Nucleic Acids Res 2007;35:193-7.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 193-197
-
-
-
2
-
-
3042818018
-
The International Protein Index: An integrated database for proteomics experiments
-
Kersey PJ, Duarte J, Williams A, et al. The International Protein Index: An integrated database for proteomics experiments. Proteomics 2004;4:1985-8.
-
(2004)
Proteomics
, vol.4
, pp. 1985-1988
-
-
Kersey, P.J.1
Duarte, J.2
Williams, A.3
-
4
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma A, Hingamp P, Quackenbush J, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 2001; 29:365-71.
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
-
5
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor CF, Paton NW, Lilley KS, et al. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 2007;25 887-93.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
-
6
-
-
34249107988
-
The minimum information required for reporting a molecular interaction experiment (MIMIx)
-
Orchard S, Salwinski L, Kerrien S, et al. The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol 2007;25:894-8.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 894-898
-
-
Orchard, S.1
Salwinski, L.2
Kerrien, S.3
-
8
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. Nucleic Acids Res 2007; 35:301-3.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 301-303
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
9
-
-
3543089294
-
Advances in the development of common interchange standards for proteomic data
-
Orchard S, Taylor CF, Hermjakob H, et al. Advances in the development of common interchange standards for proteomic data. Proteomics 2004;4:2363-5.
-
(2004)
Proteomics
, vol.4
, pp. 2363-2365
-
-
Orchard, S.1
Taylor, C.F.2
Hermjakob, H.3
-
10
-
-
33644875983
-
PRIDE: A public repository of protein and peptide identifications for the proteomics community
-
Jones P, Cote RG, Martens L, et al. PRIDE: A public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res 2006; 34:D659-63.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Jones, P.1
Cote, R.G.2
Martens, L.3
-
11
-
-
23944492134
-
Overview of the HUPO plasma proteome project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
Omenn GS, States DJ, Adamski M, et al. Overview of the HUPO plasma proteome project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 2005;5:3226-45.
-
(2005)
Proteomics
, vol.5
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
-
12
-
-
33645470209
-
The Human Liver Proteome Project (HLPP) workshop during the 4th HUPO World Congress
-
Zheng J, Gao X, Beretta L, et al. The Human Liver Proteome Project (HLPP) workshop during the 4th HUPO World Congress. Proteomics 2006;6:1716-8.
-
(2006)
Proteomics
, vol.6
, pp. 1716-1718
-
-
Zheng, J.1
Gao, X.2
Beretta, L.3
-
13
-
-
33645464381
-
The HUPO Brain Proteome Project jamboree: Centralised summary of the pilot studies
-
Hamacher M, Stephan C, Bluggel M, et al. The HUPO Brain Proteome Project jamboree: Centralised summary of the pilot studies. Proteomics 2006;6:1719-21.
-
(2006)
Proteomics
, vol.6
, pp. 1719-1721
-
-
Hamacher, M.1
Stephan, C.2
Bluggel, M.3
-
14
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli PG, Eng JK, Hubley R, et al. A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 2004;22:1459-66.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
Eng, J.K.2
Hubley, R.3
-
15
-
-
35349005184
-
Five years of progress in the standardization of proteomics data. A report on the 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative
-
Orchard S, Montechi-Palazzi L, Deutsch EW, et al. Five years of progress in the standardization of proteomics data. A report on the 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative. Proteomics 2007;7:3436-40.
-
(2007)
Proteomics
, vol.7
, pp. 3436-3440
-
-
Orchard, S.1
Montechi-Palazzi, L.2
Deutsch, E.W.3
-
17
-
-
23944440436
-
Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories
-
Martens L, Nesvizhskii AI, Hermjakob H, et al. Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories. Proteomics 2005; 5:3501-5.
-
(2005)
Proteomics
, vol.5
, pp. 3501-3505
-
-
Martens, L.1
Nesvizhskii, A.I.2
Hermjakob, H.3
-
18
-
-
0742323374
-
The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data
-
Hermjakob H, Montecchi-Palazzi L, Bader G, et al. The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat. Biotechnol 2004;22:177-83.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
-
19
-
-
35348976204
-
Broadening the Horizon - Level 2.5 of the HUPO-PSI format for molecular interactions
-
Kerrien S, Orchand S, Montecchi-Palazzi L, et al. Broadening the Horizon - Level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol 2007;5:44.
-
(2007)
BMC Biol
, vol.5
, pp. 44
-
-
Kerrien, S.1
Orchand, S.2
Montecchi-Palazzi, L.3
-
20
-
-
33845440240
-
Representing, storing and accessing molecular interaction data: A review of models and tools
-
Strömbäck L, Jakoniene V, Tan H, et al. Representing, storing and accessing molecular interaction data: A review of models and tools. Brief. Bioinformatics 2006;7:331-8.
-
(2006)
Brief. Bioinformatics
, vol.7
, pp. 331-338
-
-
Strömbäck, L.1
Jakoniene, V.2
Tan, H.3
-
21
-
-
0037245913
-
The biomolecular interaction network database
-
Bader GD, Betel D, Hogue CW. BIND: The biomolecular interaction network database. Nucleic Acids Res 2003; 31:248-50.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.B.3
-
22
-
-
0347755535
-
-
Salwinski L, Miller CS, Smith AJ, et al. The database of interacting proteins: 2004 update. Nucleic Acids Res 2004; 32 Database issue:449-51.
-
Salwinski L, Miller CS, Smith AJ, et al. The database of interacting proteins: 2004 update. Nucleic Acids Res 2004; 32 Database issue):449-51.
-
-
-
-
23
-
-
33846047770
-
IntAct - open source resource for molecular interaction data
-
Kerrien S, Alam-Faruque Y, Aranda B, et al. IntAct - open source resource for molecular interaction data. Nucleic Acids Res 2007; 35:561-5.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 561-565
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
-
25
-
-
20144387067
-
The MIPS mammalian protein-protein interaction database
-
Pagel P, Kovac S, Oesterheld M, et al. The MIPS mammalian protein-protein interaction database. Bioinformatics 2005;21 832-4.
-
(2005)
Bioinformatics
, vol.21
, pp. 832-834
-
-
Pagel, P.1
Kovac, S.2
Oesterheld, M.3
-
26
-
-
41649106470
-
Submit your interaction data the IMEx way: A step by step guide to trouble-free deposition
-
Orchard S, Kerrien S, Jones P, et al. Submit your interaction data the IMEx way: A step by step guide to trouble-free deposition. Proteomics 2007;7:28-34.
-
(2007)
Proteomics
, vol.7
, pp. 28-34
-
-
Orchard, S.1
Kerrien, S.2
Jones, P.3
-
27
-
-
34547141606
-
The PSI formal document process and its implementation on the PSI website
-
Vizcaíno JA, Martens L, Hermjakob H, et al. The PSI formal document process and its implementation on the PSI website. Proteomics 2007;7:2355-7.
-
(2007)
Proteomics
, vol.7
, pp. 2355-2357
-
-
Vizcaíno, J.A.1
Martens, L.2
Hermjakob, H.3
-
28
-
-
34547752377
-
-
Nature Biotechnology Editorial Time for leadership
-
Nature Biotechnology Editorial Time for leadership. Nat. Biotechnol 2007;25:821.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 821
-
-
-
29
-
-
35848945059
-
Standardizing proteomics
-
Doerr A. Standardizing proteomics. Nat. Methods 2007; 4:774.
-
(2007)
Nat. Methods
, vol.4
, pp. 774
-
-
Doerr, A.1
|