Proteomic identification of differentially expressed genes in mouse neural stem cells and neurons differentiated from embryonic stem cells in vitro

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1784, Issue 5, 2008, Pages 773-782

  Akama, Kuniko ^a   Tatsuno, Ryosuke ^a   Otsu, Masahiro ^b   Horikoshi, Tomoe ^a   Nakayama, Takashi ^c   Nakamura, Megumi ^d   Toda, Tosifusa ^d   Inoue, Nobuo ^b  

^a CHIBA UNIVERSITY   (Japan)

^b TOKYO METROPOLITAN UNIVERSITY   (Japan)

^c YOKOHAMA CITY UNIVERSITY   (Japan)

^d TOKYO METROPOLITAN INSTITUTE OF GERONTOLOGY   (Japan)

Author keywords

Differential expression; Embryonic stem cell; Neural stem cell; Neuronal differentiation

Indexed keywords

BINDING PROTEIN; GALECTIN 1; LAMININ; LAMININ RECEPTOR; MEMBRANE PROTEIN; MESSENGER RNA; NERVE CELL ADHESION MOLECULE;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; DNA FINGERPRINTING; DOWN REGULATION; EMBRYONIC STEM CELL; EXTRACELLULAR MATRIX; GENE EXPRESSION; GENETIC VARIABILITY; IN VITRO STUDY; MOLECULAR MECHANICS; MOUSE; NERVE CELL DIFFERENTIATION; NERVOUS SYSTEM DEVELOPMENT; NEURAL STEM CELL; NONHUMAN; PEPTIDE MASS FINGERPRINTING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION; WESTERN BLOTTING;

ANIMALS; BLOTTING, WESTERN; CELL DIFFERENTIATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; EMBRYONIC STEM CELLS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; MICE; NEURONS; PROTEOMICS; RNA, MESSENGER;

EID: 41949125853     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.02.001     Document Type: Article

References (46)

1. Pearce A., and Svendsen C.N. Characterization of stem cell expression using two-dimensional electrophoresis. Electrophoresis 20 (1999) 969-970
2. Guo X., Ying W., Wan J., Hu Z., Qian X., Zhang H., and He F. Proteomic characterization of early-stage differentiation of mouse embryonic stem cells into neural cells induced by all-trans retinoic acid in vitro. Electrophoresis 22 (2001) 3067-3075
3. Maurer M.H., Feldmann Jr. R.E., Futterer C.D., and Kuschinsky W. The proteome of neural stem cells from adult rat hippocampus. Proteome Sci. 1 (2003) 4
4. Maurer M.H., Feldmann Jr. R.E., Futterer C.D., Butlin J., and Kuschinsky W. Comprehensive proteome expression profiling of undifferentiated versus differentiated neural stem cells from adult rat hippocampus. Neurochem Res. 29 (2004) 1129-1144
5. Wang D., and Gao L. Proteomic analysis of neural differentiation of mouse embryonic stem cells. Proteomics 5 (2005) 4414-4426
6. Hoffrogge R., Mikkat S., Scharf C., Beyer S., Christoph H.J., Pahnke E., Mix M., Berth A., Uhrmacher I.Z., Zubrzycki E., Miljan U., Volker U., and Rolfs A. 2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReNcell VM). Proteomics 6 (2006) 1833-1847
7. Hoffrogge R., Beyer S., Völker U., Uhrmacher A.M., and Rolfs A. 2-DE proteomic profiling of neural stem cells. Neurodegenerative Dis. 3 (2006) 112-121
8. Nakayama T., Momoki-Soga T., and Inoue N. Astrocyte-derived factors instruct differentiation of embryonic stem cells into neurons. Neurosci. Res. 46 (2003) 241-249
9. Nakayama T., Momoki-Soga T., Yamaguchi K., and Inoue N. Efficient production of neural stem cells and neurons from embryonic stem cells. NeuroReport 15 (2004) 487-491
10. Nakayama T., and Inoue N. Embryonic cell protocols: differentiation model, neural stem sphere method: induction of neural stem cells and neurons by astrocyte-derived factors in embryonic stem cells in vitro. In: Turksen K. (Ed) (2006), Humana Press, New Jersey 1-13
11. Nakayama T., Sai T., Otsu M., Momoki-Soga T., and Inoue N. Astrocytogenesis of embryonic stem-cell-derived neural stem cells: Default differentiation. NeuroReport 17 (2006) 1519-1523
12. Toda T., and Kimura N. Standardization of protocol for Immobiline 2-D PAGE and construction of 2-D PAGE protein database on World Wide Web home page. Jpn. J. Electrophoresis 41 (1997) 13-20
13. Kaech S., Parmar H., Roelandse M., Bornmann C., and Matus A. Cytoskeletal microdifferentiation: a mechanism for organizing morphological plasticity in dendrites. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 7086-7092
14. Sasaki T., and Takai Y. The Rho small G protein family-Rho GDI system as a temporal and spatial determinant for cytoskeletal control. Biochem. Biophys. Res. Commun. 245 (1998) 641-645
15. 2+-binding protein retained in the endoplasmic reticulum with a Novel carboxyl-terminal sequence HDEF. J. Biol. Chem. 272 (1997) 18232-18239.
16. Jensen P., Magdaleno S., Lehmen K.M., Rice D.S., LaVallie E.R.L., Collins-Rache J., McCoy M., and Curran T. A neurogenomics approach to gene expression analysis in the developing brain. Mol. Brain Res. 132 (2004) 116-127
17. Ullrich S.J., Robinson E.A., Law L.W., Willingham M., and Appella E. A mouse tumor-specific transplantation antigen is a heat shock-related protein. Proc. Natl. Acad. Sci. U. S. A. 83 (1986) 3121-3125
18. Seefeldt I., Nebrich G., Romer I., Mao L., and Klose J. Evaluation of 2-DE protein patterns from pre- and postnatal stages of the mouse brain. Proteomics 6 (2006) 4932-4939
19. Sakaguchi M., Shingo T., Shimazaki T., Okano H.J., Shiwa M., Ishibashi S., Oguro H., Ninomiya M., Kadoya T., Horie H., Shibuya A., Mizusawa H., Poirier F., Nakauchi H., Sawamoto K., and Okano H. A carbohydrate-binding protein, Galectin-1, promotes proliferation of adult neural stem cells. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 7112-7117
20. Yano M., Okano H.J., and Okano H. Involvement of Hu and heterogeneous nuclear ribonucleoprotein K in neuronal differentiation through p21 mRNA post-transcriptional regulation. J. Biol. Chem. 280 (2005) 12690-12699
21. Arai Y., Funatsu N., Numayama-Tsuruta K., Nomura T., Nakamura S., and Osumi N. Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex. J. Neurosci. 25 (2005) 9752-9761
22. Anthony T.E., Klein C., Fishell G., and Heintz N. Radial glia serve as neuronal progenitors on all regions of the central nervous system. Neuron 41 (2004) 881-890
23. Owada Y., Yoshimoto T., and Kondo H. Spatio-temporally differential expression of genes for three members of fatty acid binding proteins in developing and mature rat brains. J. Chem. Neuroanat. 12 (1996) 113-122
24. Owada Y., Abdelwahab S.A., Kitanaka N., Sakagami H., Takano H., Sugitani Y., Sugawara M., Kawashima H., Kiso Y., Mobarakeh J.I., Yanai K., Kaneko K., Sasaki H., Kato H., Saino-Saito S., Matsumoto N., Akaike N., Noda T., and Kondo H. Altered emotional behavioral responses in mice lacking brain-type fatty acid-binding protein gene. Eur. J. Neurosci. 24 (2006) 175-187
25. McConnell S.K. Constructing the cerebral cortex: neurogenesis and fate determination. Neuron 15 (1995) 761-768
26. Qian X., Shen Q., Goderie S.K., He W., Capela A., Davis A.A., and Temple S. Timing of CNS cell generation: a programmed sequence of neuron and glial cell production from isolated murine cortical stem cells. Neuron 28 (2000) 69-80
27. Temple S. The development of neural stem cells. Nature 414 (2001) 112-117
28. Hatakeyama J., Bessho Y., Katoh K., Ookawara S., Fujioka M., Guillemot F., and Kageyama R. Hes genes regulate size, shape and histogenesis of the nervous system by control of the timing of neural stem cell differentiation. Development 131 (2004) 5539-5550
29. Moore S.C., Robinson E.A., Ullrich S.J., and Appella E. Murine 86- and 84-kDa heat shock proteins, cDNA sequences, chromosome assignments, and evolutionary origins. J. Biol. Chem. 264 (1989) 5343-5351
30. Hoffmann T., Hovermann, and B. Heat-shock proteins, Hsp84 and Hsp86, of mice and men: two related genes encode formally identified tumor-specific transplantation antigens. Gene 74 (1988) 491-501
31. McClung J.K., Jupe E.R., Liu X.-T., and Dell'Orco R.T. Prohibitin: potential role in senescence, development, and tumor suppression. Exp. Gerontol. 30 (1995) 99-124
32. Fusaro G., Dasgupta P., Rastogi S., Joshi B., and Chellappan S. Prohibitin induces the transcriptional activity of p53 and is exported from the nucleus upon apoptotic signaling. J. Biol. Chem. 278 (2003) 47853-47861
33. Battersby A., Jones R.D., Lilley K.S., McFarlane R.J., Braig H.R., Allen N.D., and Wakeman J.A. Comparative proteomic analysis reveals differential expression of Hsp25 following the directed differentiation of mouse embryonic stem cells. Biochim. Biophys. Acta 1773 (2007) 147-156
34. Katagiri Y.U., Kiyokawa N., Nakamura K., Takenouchi H., Taguchi T., Okita H., Umezawa A., and Fujimoto J. Laminin binding protein, 34/67 laminin receptor, carries stage-specific embryonic antigen-4 epitope defined by monoclonal antibody Raft. 2. Biochem. Biophys. Res. Commun. 332 (2005) 1004-1011
35. Satoh K., Narumi K., Isemura M., Sakai T., Abe T., Mastushima K., Okuda K., and Motomiya M. Increased expression of the 67 kDa-laminin receptor gene in human small cell lung cancer. Biochem. Biophys. Res. Commun. 182 (1992) 746-752
36. Yow H., Wong J.M., Chen H.S., Lee C., Steele Jr. G.D., and Chen L.B. Increased mRNA expression of a laminin-binding protein in human colon carcinoma: complete sequence of a full-length cDNA encoding the protein. Proc. Natl. Acad. Sci. U. S. A. 85 (1988) 6394-6398
37. Satoh K., Narumi K., Sakai T., Abe T., Kikuchi T., Matsushima K., Sindoh S., and Motomiya M. Cloning of 67-kDa laminin receptor cDNA and gene expression in normal and malignant cell lines of the human lung. Cancer Lett. 62 (1992) 199-203
38. Hughes R.C. Galectins as modulators of cell adhesion. Biochimie (Paris) 83 (2001) 667-676
39. Fouillit M., Joubert-Caron R., Poirier F., Bourin P., Monostori E., Levi-Strauss M., Raphael M., Bladier D., and Caron M. Regulation of CD45-induced signaling by galectin-1 in Burkitt lymphoma B cells. Glycobiology 10 (2000) 413-419
40. Fischer C., Sanchez-Ruderisch H., Welzel M., Wiedenmann B., Sakai T., André S., Gabius H.J., Khachigian L., Detjen K.M., and Rosewicz S. Galectin-1 interacts with the α5β1fibronectin receptor to restrict carcinoma cell growth via induction for p21 and p27. J. Biol. Chem. 289 (2005) 37266-37277
41. Liu M., Lee M.H., Cohen M., Bommakanti M., and Freedman L.P. Transcriptional activation of the Cdk inhibitor p21 by vitamin D3 leads to the induced differentiation of the myelomonocytic cell line U937. Genes Dev. 10 (1996) 142-153
42. Mahanthappa N.K., Cooper D.N., Barondes S.H., and Schwarting G.A. Rat olfactory neurons can utilize the endogenous lectin, L-14, in a novel adhesion mechanism. Development 120 (1994) 1373-1384
43. Puche A.C., Porier F., Hair M., Bartlett P.F., and Key B. Role of galectin-1 in the developing mouse olfactory system. Dev. Biol. 179 (1996) 274-287
44. Kurushima H., Ohno M., Miura T., Nakamura T.Y., Horie H., Kadoya T., Ooboshi H., Kitazono T., Ibayashi S., Iida M., and Nakabeppu Y. Selective induction of ΔFosB in the brain after transient forebrain ischemia accompanied by an increased expression of galectin-1, and the implication of ΔFosB and galectin-1 in the neuroprotection and neurogenesis. Cell Death Differ. 12 (2005) 1078-1096
45. Plachta N., Annaheim C., Bissiere S., Lin S., Ruegg M., Hoving S., Muller D., Poroer F., Bibel M., and Barde Y.-A. Identification of a lectin causing the degradation of neuronal processes using engineered embryonic stem cells. Nat. Neurosci. 10 (2007) 712-719
46. Watanabe A., Toyota T., Owada Y., Hayashi T., Iwayama Y., Matsumata M., Ishitsuka Y., Nakaya A., Maekawa M., Ohnishi T., Arai R., Sakurai K., Yamada K., Kondo H., Hashimoto K., Osumi N., and Yoshikawa T. Fabp7 maps to a quantitative trait locus for a Schizophrenia endophenotype. PLoS Biol. 5 11 (2007) e297 1-15