메뉴 건너뛰기




Volumn 105, Issue 11, 2008, Pages 4156-4161

Fluorescence resonance energy transfer in near-infrared fluorescent oligonucleotide probes for detecting protein-DNA interactions

Author keywords

Carbocyanine; Transcription factor

Indexed keywords

FLUOROCHROME; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; INDODICARBOCYANINE; OLIGONUCLEOTIDE; DNA; PROTEIN;

EID: 41949095838     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0800162105     Document Type: Article
Times cited : (55)

References (34)
  • 1
    • 0005925756 scopus 로고
    • Energy transfer in conjugated proteins and nucleic acids
    • Shore VG, Pardee AB (1956) Energy transfer in conjugated proteins and nucleic acids. Arch Biochem Biophys 62:355-368.
    • (1956) Arch Biochem Biophys , vol.62 , pp. 355-368
    • Shore, V.G.1    Pardee, A.B.2
  • 2
    • 0018186386 scopus 로고
    • Fluorescence and chemical studies on the interaction of Escherichia coli DNA-binding protein with single-stranded DNA
    • Bandyopadhyay PK, Wu CW (1978) Fluorescence and chemical studies on the interaction of Escherichia coli DNA-binding protein with single-stranded DNA. Biochemistry 17:4078-4085.
    • (1978) Biochemistry , vol.17 , pp. 4078-4085
    • Bandyopadhyay, P.K.1    Wu, C.W.2
  • 3
    • 0024403429 scopus 로고
    • Negative co-operativity in Escherichia coli single strand binding protein-oligonucleotide interactions. I. Evidence and a quantitative model
    • Bujalowski W, Lohman TM (1989) Negative co-operativity in Escherichia coli single strand binding protein-oligonucleotide interactions. I. Evidence and a quantitative model. J Mol Biol 207:249-268.
    • (1989) J Mol Biol , vol.207 , pp. 249-268
    • Bujalowski, W.1    Lohman, T.M.2
  • 4
    • 0000706201 scopus 로고
    • Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer
    • Cardullo RA, Agrawal S, Flores C, Zamecnik PC, Wolf DE (1988) Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer. Proc Natl Acad Sci USA 85:8790-8794.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8790-8794
    • Cardullo, R.A.1    Agrawal, S.2    Flores, C.3    Zamecnik, P.C.4    Wolf, D.E.5
  • 5
    • 0029008807 scopus 로고
    • Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics
    • Perez-Howard GM, Weil PA, Beechem JM (1995) Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry 34:8005-8017.
    • (1995) Biochemistry , vol.34 , pp. 8005-8017
    • Perez-Howard, G.M.1    Weil, P.A.2    Beechem, J.M.3
  • 6
    • 0028281762 scopus 로고
    • Studies on primer binding of HIV-1 reverse transcriptase using a fluorescent probe
    • Delahunty MD, Wilson SH, Karpel RL (1994) Studies on primer binding of HIV-1 reverse transcriptase using a fluorescent probe. J Mol Biol 236:469-479.
    • (1994) J Mol Biol , vol.236 , pp. 469-479
    • Delahunty, M.D.1    Wilson, S.H.2    Karpel, R.L.3
  • 7
    • 0028827717 scopus 로고
    • Interaction between the Escherichia coli regulatory protein TyrR and DNA: A fluorescence footprinting study
    • Bailey M, et al. (1995) Interaction between the Escherichia coli regulatory protein TyrR and DNA: A fluorescence footprinting study. Biochemistry 34:15802-15812.
    • (1995) Biochemistry , vol.34 , pp. 15802-15812
    • Bailey, M.1
  • 8
    • 1542493295 scopus 로고    scopus 로고
    • Generation of stably transfected mammalian cell lines as fluorescent screening assay for NF-kappa B activationdependent gene expression
    • Hellweg C, Baumstark-Khan C, Horneck G (2003) Generation of stably transfected mammalian cell lines as fluorescent screening assay for NF-kappa B activationdependent gene expression. J Biomol Screening 8:511-521.
    • (2003) J Biomol Screening , vol.8 , pp. 511-521
    • Hellweg, C.1    Baumstark-Khan, C.2    Horneck, G.3
  • 9
    • 0036297293 scopus 로고    scopus 로고
    • Molecular aptamer beacons for real-time protein recognition
    • Li J, Fang X, Tan W (2002) Molecular aptamer beacons for real-time protein recognition. Biochem Biophys Res Commun 292:31-40.
    • (2002) Biochem Biophys Res Commun , vol.292 , pp. 31-40
    • Li, J.1    Fang, X.2    Tan, W.3
  • 10
    • 0035879386 scopus 로고    scopus 로고
    • Aptamer beacons for the direct detection of proteins
    • Hamaguchi N, Ellington A, Stanton M (2001) Aptamer beacons for the direct detection of proteins. Anal Biochem 294:126-131.
    • (2001) Anal Biochem , vol.294 , pp. 126-131
    • Hamaguchi, N.1    Ellington, A.2    Stanton, M.3
  • 11
    • 33646824111 scopus 로고    scopus 로고
    • Exo-Dye-based assay for rapid, inexpensive, and sensitive detection of DNA-binding proteins
    • Chen Z, Ji M, Hou P, Lu Z (2006) Exo-Dye-based assay for rapid, inexpensive, and sensitive detection of DNA-binding proteins. Biochem Biophys Res Commun345:1254-1263.
    • (2006) Biochem Biophys Res Commun , vol.345 , pp. 1254-1263
    • Chen, Z.1    Ji, M.2    Hou, P.3    Lu, Z.4
  • 12
    • 0034677706 scopus 로고    scopus 로고
    • Molecular beacons: A novel approach to detect protein-DNA interactions
    • Li JJ, Fang X, Schuster SM, Tan W (2000) Molecular beacons: A novel approach to detect protein-DNA interactions. Angew Chem Int Ed Engl 39:1049-1052.
    • (2000) Angew Chem Int Ed Engl , vol.39 , pp. 1049-1052
    • Li, J.J.1    Fang, X.2    Schuster, S.M.3    Tan, W.4
  • 13
    • 0037799721 scopus 로고    scopus 로고
    • Cellular uptake and intracellular fate of antisense oligonucleotides
    • Thierry AR, et al. (2003) Cellular uptake and intracellular fate of antisense oligonucleotides. Curr Opin Mol Ther 5:133-138.
    • (2003) Curr Opin Mol Ther , vol.5 , pp. 133-138
    • Thierry, A.R.1
  • 14
    • 3042822059 scopus 로고    scopus 로고
    • Increased uptake of antisense oligonucleotides by delivery as double stranded complexes
    • Astriab-Fisher A, Fisher MH, Juliano R, Herdewijn P (2004) Increased uptake of antisense oligonucleotides by delivery as double stranded complexes. Biochem Pharmacol 68:403-407.
    • (2004) Biochem Pharmacol , vol.68 , pp. 403-407
    • Astriab-Fisher, A.1    Fisher, M.H.2    Juliano, R.3    Herdewijn, P.4
  • 15
    • 0028174061 scopus 로고
    • Function and activation of NF-kappa B in the immune system
    • Baeuerle PA, Henkel T (1994) Function and activation of NF-kappa B in the immune system. Annu Rev Immunol 12:141-179.
    • (1994) Annu Rev Immunol , vol.12 , pp. 141-179
    • Baeuerle, P.A.1    Henkel, T.2
  • 16
    • 0035137882 scopus 로고    scopus 로고
    • Control of oncogenesis and cancer therapy resistance by the transcription factor NF-kappaB
    • Baldwin AS (2001) Control of oncogenesis and cancer therapy resistance by the transcription factor NF-kappaB. J Clin Invest 107:241-246.
    • (2001) J Clin Invest , vol.107 , pp. 241-246
    • Baldwin, A.S.1
  • 17
    • 0036782706 scopus 로고    scopus 로고
    • Transcription factors as targets for cancer therapy
    • Darnell JE, Jr (2002) Transcription factors as targets for cancer therapy. Nat Rev Cancer 2:740-749.
    • (2002) Nat Rev Cancer , vol.2 , pp. 740-749
    • Darnell Jr, J.E.1
  • 18
    • 0029874138 scopus 로고    scopus 로고
    • The NF-kappa B and I kappa B proteins: New discoveries and insights
    • Baldwin AS, Jr (1996) The NF-kappa B and I kappa B proteins: New discoveries and insights. Annu Rev Immunol 14:649-683.
    • (1996) Annu Rev Immunol , vol.14 , pp. 649-683
    • Baldwin Jr, A.S.1
  • 19
    • 0033557331 scopus 로고    scopus 로고
    • The salt dependence of DNA recognition by NF-kappaB p50: A detailed kinetic analysis of the effects on affinity and specificity
    • Hart DJ, Speight RE, Cooper MA, Sutherland JD, Blackburn JM (1999) The salt dependence of DNA recognition by NF-kappaB p50: A detailed kinetic analysis of the effects on affinity and specificity. Nucleic Acids Res 27:1063-1069.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1063-1069
    • Hart, D.J.1    Speight, R.E.2    Cooper, M.A.3    Sutherland, J.D.4    Blackburn, J.M.5
  • 20
    • 0028979479 scopus 로고
    • Structure of NF-kappa B p50 homodimer bound to a kappa B site
    • Ghosh G, van Duyne G, Ghosh S, Sigler PB (1995) Structure of NF-kappa B p50 homodimer bound to a kappa B site. Nature 373:303-310.
    • (1995) Nature , vol.373 , pp. 303-310
    • Ghosh, G.1    van Duyne, G.2    Ghosh, S.3    Sigler, P.B.4
  • 22
    • 9244242611 scopus 로고    scopus 로고
    • Synthesis and properties of fluorescent NF-kappa B-recognizing hairpin oligodeoxyribonucleotide decoys
    • Metelev V, Weissleder R, Bogdanov A, Jr (2004) Synthesis and properties of fluorescent NF-kappa B-recognizing hairpin oligodeoxyribonucleotide decoys. Bioconj Chem 15:1481-1487.
    • (2004) Bioconj Chem , vol.15 , pp. 1481-1487
    • Metelev, V.1    Weissleder, R.2    Bogdanov Jr, A.3
  • 23
    • 33947103197 scopus 로고    scopus 로고
    • Cell death in NF-kappaB-dependent tumour cell lines as a result of NF-kappaB trapping by linker-modified hairpin decoy oligonucleotide
    • Laguillier C, et al. (2007) Cell death in NF-kappaB-dependent tumour cell lines as a result of NF-kappaB trapping by linker-modified hairpin decoy oligonucleotide. FEBS Lett 581:1143-1150.
    • (2007) FEBS Lett , vol.581 , pp. 1143-1150
    • Laguillier, C.1
  • 24
    • 0037606043 scopus 로고    scopus 로고
    • Regulation of human beta 2-microglobulin transactivation in hematopoietic cells
    • Gobin SJ, Biesta P, Van den Elsen PJ (2003) Regulation of human beta 2-microglobulin transactivation in hematopoietic cells. Blood 101:3058-3064.
    • (2003) Blood , vol.101 , pp. 3058-3064
    • Gobin, S.J.1    Biesta, P.2    Van den Elsen, P.J.3
  • 25
    • 38349121967 scopus 로고    scopus 로고
    • A novel thymidine phosphoramidite synthon for incorporation of internucleoside phosphate linkers during automated oligodeoxynucleotide synthesis
    • Tabatadze D, et al. (2007) A novel thymidine phosphoramidite synthon for incorporation of internucleoside phosphate linkers during automated oligodeoxynucleotide synthesis. Nucleosides Nucleotides Nucleic Acids 27:157-172.
    • (2007) Nucleosides Nucleotides Nucleic Acids , vol.27 , pp. 157-172
    • Tabatadze, D.1
  • 26
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi S, Kramer F (1996) Molecular beacons: Probes that fluoresce upon hybridization. Nat Biotechnol 14:303-308.
    • (1996) Nat Biotechnol , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.2
  • 27
    • 33747409084 scopus 로고    scopus 로고
    • Molecular beacons: Fluorescent probes for detection of endogenous mRNAs in living cells
    • Bratu DP (2006) Molecular beacons: Fluorescent probes for detection of endogenous mRNAs in living cells. Methods Mol Biol 319:1-14.
    • (2006) Methods Mol Biol , vol.319 , pp. 1-14
    • Bratu, D.P.1
  • 28
    • 0034622970 scopus 로고    scopus 로고
    • Scanometric DNA array detection with nanoparticle probes
    • Taton TA, Mirkin CA, Letsinger RL (2000) Scanometric DNA array detection with nanoparticle probes. Science 289:1757-1760.
    • (2000) Science , vol.289 , pp. 1757-1760
    • Taton, T.A.1    Mirkin, C.A.2    Letsinger, R.L.3
  • 29
    • 33646738061 scopus 로고    scopus 로고
    • Oligonucleotide-modified gold nanoparticles for intracellular gene regulation
    • Rosi NL, et al. (2006) Oligonucleotide-modified gold nanoparticles for intracellular gene regulation. Science 312:1027-1030.
    • (2006) Science , vol.312 , pp. 1027-1030
    • Rosi, N.L.1
  • 30
    • 0142230995 scopus 로고    scopus 로고
    • In vivo near-infrared fluorescence imaging
    • Frangioni JV (2003) In vivo near-infrared fluorescence imaging. Curr Opin Chem Biol 7:626-634.
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 626-634
    • Frangioni, J.V.1
  • 31
    • 33748129960 scopus 로고    scopus 로고
    • Fluorescence molecular imaging
    • Ntziachristos V (2006) Fluorescence molecular imaging. Annu Rev Biomed Eng 8:1-33.
    • (2006) Annu Rev Biomed Eng , vol.8 , pp. 1-33
    • Ntziachristos, V.1
  • 32
    • 33744487875 scopus 로고    scopus 로고
    • Molecular imaging in cancer
    • Weissleder R (2006) Molecular imaging in cancer. Science 312:1168-1171.
    • (2006) Science , vol.312 , pp. 1168-1171
    • Weissleder, R.1
  • 34
    • 0028824432 scopus 로고
    • Tumor labeling in vivo using cyanine-conjugated monoclonal antibodies
    • Ballou B, et al. (1995) Tumor labeling in vivo using cyanine-conjugated monoclonal antibodies. Cancer Immunol Immunother 41:257-263.
    • (1995) Cancer Immunol Immunother , vol.41 , pp. 257-263
    • Ballou, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.