메뉴 건너뛰기




Volumn 7, Issue 6, 2007, Pages 575-582

The use of multiple hierarchically independent gene ontology terms in gene function prediction and genome annotation

Author keywords

Annotation strategies; Arabidopsis genome; Gene function prediction; Gene Ontology; Genome annotation; Multi label classification; Protein function

Indexed keywords

PROTEOME;

EID: 41849106430     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (13)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unificafion of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium (2000). Gene Ontology: Tool for the unificafion of biology. Nature Genet. 25, 25-29.
    • (2000) Nature Genet , vol.25 , pp. 25-29
  • 2
    • 33645323768 scopus 로고    scopus 로고
    • Hierarchical multi-label prediction of gene function
    • Barutcuoglu, Z., Schapire, R. E. and Troyanskaya, O. G. (2006). Hierarchical multi-label prediction of gene function. Bioinformatics 22, 830-836.
    • (2006) Bioinformatics , vol.22 , pp. 830-836
    • Barutcuoglu, Z.1    Schapire, R.E.2    Troyanskaya, O.G.3
  • 3
    • 0036100116 scopus 로고    scopus 로고
    • Learning gene functional classifications from multiple data types
    • Pavlidis, P., Weston, J., Cai, J. and Noble, W. S. (2002). Learning gene functional classifications from multiple data types. J. Comput. Biol. 9, 401-411.
    • (2002) J. Comput. Biol , vol.9 , pp. 401-411
    • Pavlidis, P.1    Weston, J.2    Cai, J.3    Noble, W.S.4
  • 4
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
    • Troyanskaya, O. G., Dolinski, K., Owen, A. B., Altman, R. B. and Botstein, D. (2003). A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc. Natl. Acad. Sci. USA 100, 8348-8353.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3    Altman, R.B.4    Botstein, D.5
  • 6
    • 6944251719 scopus 로고    scopus 로고
    • Predicting gene function in Saccharomyces cerevisiae
    • Clare, A. and King, R. D. (2003). Predicting gene function in Saccharomyces cerevisiae. Bioinformatics Suppl. 2, 42-49.
    • (2003) Bioinformatics Suppl , vol.2 , pp. 42-49
    • Clare, A.1    King, R.D.2
  • 7
    • 33750303563 scopus 로고    scopus 로고
    • Decision trees for hierarchical multilabel classification: A case study in functional genomics
    • Proceedings of PKDD 2006, 10th European Conference on Principles and Practice of Knowledge Discovery in Databases
    • Blockeel, H., Schietgat, L., Struyf, J., Dzeroski, S. and Clare, A. (2006). Decision trees for hierarchical multilabel classification: A case study in functional genomics. In: Proceedings of PKDD 2006, 10th European Conference on Principles and Practice of Knowledge Discovery in Databases, vol 4213, LNAI, pp. 18-29.
    • (2006) LNAI , vol.4213 , pp. 18-29
    • Blockeel, H.1    Schietgat, L.2    Struyf, J.3    Dzeroski, S.4    Clare, A.5
  • 8
    • 45149115870 scopus 로고    scopus 로고
    • Improved functional prediction of proteins by learning kernel combinations in multilabel settings
    • Roth, V. and Fischer, B. (2007). Improved functional prediction of proteins by learning kernel combinations in multilabel settings. BMC Bioinformatics 8 (Suppl. 2), S12.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 2
    • Roth, V.1    Fischer, B.2
  • 9
    • 33947681316 scopus 로고    scopus 로고
    • ML-KNN: A lazy learning approach to multi-label learning
    • Zhang, M. L. and Zhou, Z. H. (2007). ML-KNN: A lazy learning approach to multi-label learning. Pattern Recognition 40, 2038-2048.
    • (2007) Pattern Recognition , vol.40 , pp. 2038-2048
    • Zhang, M.L.1    Zhou, Z.H.2
  • 12
    • 13444282474 scopus 로고    scopus 로고
    • Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bradley, P., Bork, P., Bucher, P., Cerutti, L., Copley, R., Courcelle, E., Das, U., Durbin, R., Fleischmann, W., Gough, J., Haft, D., Harte, N., Hulo, N., Kahn, D., Kanapin, A., Krestyaninova, M., Lonsdale, D., Lopez, R., Letunic, I., Madera, M., Maslen, J., McDowall, J., Mitchell, A., Nikolskaya, A. N., Orchard, S., Pagni, M., Ponting, C. P., Quevillon, E., Selengut, J., Sigrist, C. J. A., Silventoinen, V., Studholme, D. J., Vaughan, R. and Wu, C. H. (2005). InterPro, progress and status in 2005. Nucleic Acids Res. 33, 201-205.
    • Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bradley, P., Bork, P., Bucher, P., Cerutti, L., Copley, R., Courcelle, E., Das, U., Durbin, R., Fleischmann, W., Gough, J., Haft, D., Harte, N., Hulo, N., Kahn, D., Kanapin, A., Krestyaninova, M., Lonsdale, D., Lopez, R., Letunic, I., Madera, M., Maslen, J., McDowall, J., Mitchell, A., Nikolskaya, A. N., Orchard, S., Pagni, M., Ponting, C. P., Quevillon, E., Selengut, J., Sigrist, C. J. A., Silventoinen, V., Studholme, D. J., Vaughan, R. and Wu, C. H. (2005). InterPro, progress and status in 2005. Nucleic Acids Res. 33, 201-205.
  • 13
    • 33646151629 scopus 로고    scopus 로고
    • Functional bioinformatics for Arabidopsis thaliana
    • Clare, A., Karwath, A., Ougham, H. and King, R. D. (2006). Functional bioinformatics for Arabidopsis thaliana. Bioinformatics 22, 1130-1136.
    • (2006) Bioinformatics , vol.22 , pp. 1130-1136
    • Clare, A.1    Karwath, A.2    Ougham, H.3    King, R.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.