Multilocus sequence identification of Penicillium species in cork bark during plank preparation for the manufacture of stoppers

Research in Microbiology

Volumn 159, Issue 3, 2008, Pages 178-186

  Serra, Rita ^a,c   Peterson, Stephen ^b,c   Venâncio, Armando ^a,c  

^a UNIVERSITY OF MINHO   (Portugal)

^b NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

^c Centro Tecnologico da Cortica   (Portugal)

Author keywords

Biodiversity; Cork; Industrial microbiology; Mycology; Penicillium; Taxonomy

Indexed keywords

ARTICLE; ASPERGILLUS; COLONY FORMING UNIT; DNA SEQUENCE; FUNGAL STRAIN; FUNGUS ISOLATION; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PENICILLIUM; PENICILLIUM GLABRUM; PENICILLIUM GLANDICOLA; PENICILLIUM TOXICARIUM; PHENOTYPE; PRIORITY JOURNAL;

DNA, FUNGAL; INDUSTRIAL MICROBIOLOGY; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; PENICILLIUM; PLANT BARK; QUERCUS; SEQUENCE ANALYSIS, DNA; SPORES, FUNGAL;

PENICILLIUM; PENICILLIUM GLABRUM; PENICILLIUM GLANDICOLA;

EID: 41749116625     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2007.12.009     Document Type: Article

References (34)

1. Abe S. Studies on the classification of the Penicillia. J. Gen. Appl. Microbiol. 2 (1956) 1-334
2. Álvarez-Rodríguez M.A., López-Ocaña L., López-Coronado J.M., Rodríguez E., Martínez M.J., Larriba J., et al. Cork taint of wines: role of the filamentous fungi isolated from cork in the formation of 2,4,6-trichloroanisole by o methylation of 2,4,6-trichlorophenol. Appl. Environ. Microbiol. 68 (2002) 5860-5869
3. Baum D.A., and Shaw K.L. Genealogical perspectives on the species problem. In: Hoch P.C., and Stephenson A.G. (Eds). Experimental and molecular approaches to plant biosystematics (1995), Missouri Botanical Garden, Missouri 289-303
4. Cole R.J., Schwiekert M.A., and Jarvis B.B. Handbook of fungal secondary metabolites (2003), Academic Press, Oxford
5. Dettman J.R., Jacobson D.J., and Taylor J.W. A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57 (2003) 2703-2720
6. Fortes M.A., Rosa M.E., and Pereira H. A cortiça (2004), IST Press, Lisboa
7. Glass N.L., and Donaldson G.C. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl. Environ. Microbiol. 61 (1995) 1323-1330
8. Larsen T.O., and Frisvad J.C. Chemosystematics of Penicillium based on profiles of volatile metabolites. Mycol. Res. 99 (1995) 1167-1174
9. Liu Y., Whelen S., and Hall B.D. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol. Biol. Evol. 16 (1999) 1799-1808
10. Oliveira A.C., Peres C.M., Pires J.M., Pereira C.S., Vitorino S., Marques J.J., et al. Cork stoppers industry: defining appropriate mould colonization. Microbiol. Res. 158 (2003) 117-124
11. Page B.T., and Kurtzman C.P. Rapid identification of Candida species and other clinically important yeast species by flow cytometry. J. Clin. Microbiol. 43 (2005) 4507-4514
12. Pereira C.S., Marques J.J.F., and San Romão M.V. Cork taint in wine: scientific knowledge and public perception-a critical review. Crit. Rev. Microbiol. 26 (2000) 147-162
13. Perrone G., Mulè G., Susca A., Battilani P., Pietri A., and Logrieco A. Ochratoxin A production and amplified fragment length polymorphism analysis of Aspergillus carbonarius, Aspergillus tubingensis, and Aspergillus niger strains isolated from grapes in Italy. Appl. Environ. Microbiol. 72 (2006) 680-685
14. Peterson S.W. Phylogenetic analysis of Penicillium based on ITS and LSU rDNA sequences. In: Samson R.A., and Pitt J.I. (Eds). Integration of modern methods for Penicillium and Aspergillus classification (2000), Harwood Academic Publishers, Amsterdam 163-178
15. Peterson S.W., Bayer E.M., and Wicklow D.T. Penicillium thiersii, Penicillium angulare and Penicillium decaturense, new species isolated from wood-decay fungi in North America and their phylogenetic placement from multilocus DNA sequence analysis. Mycologia 96 (2004) 1280-1293
16. Peterson S.W., Horn B.W., Ito Y., and Goto T. Genetic variation and aflatoxin production in Aspergillus tamarii and A. caelatus. In: Samson R.A., and Pitt J.I. (Eds). Classification of Penicilliumand Aspergillus: integration of modern taxonomic methods (2000), Harwood Publishers, Reading 447-458
17. Peterson S.W., Vega F.E., Posada F., and Nagai C. Penicillium coffeae, a new endophytic species isolated from a coffee plant and its phylogenetic relationship to P. fellutanum, P. thiersii and P. brocae based on parsimony analysis of multilocus DNA sequences. Mycologia 97 (2005) 659-666
18. Pitt J.I. The genus Penicillium and its teleomorphic states Eupenicillium and Talaromyces (1979), Academic Press, London
19. Pitt J.I., Samson R.A., and Frisvad J.C. List of accepted species and their synonyms in the family Trichocomaceae. In: Samson R.A., and Pitt J.I. (Eds). Integration of modern methods for Penicillium and Aspergillus classification (2000), Harwood Academic Publishers, Amsterdam 9-49
20. Prak S., Gunata Z., Guiraud J., and Schorr-Galindo S. Fungal strains isolated from cork stoppers and the formation of 2,3,6-trichloroanisole involved in the cork taint of wine. Food Microbiol. 24 (2007) 271-280
21. Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
22. Samson R.A., and Frisvad J.C. Penicillium subgenus Penicillium: new taxonomic schemes, mycotoxins and other extrolites. Stud. Mycol. 49 (2004) 1-173
23. Santos M.N., and Bragança M.H. Caracterização da micoflora da cortiça desde o descortiçamento à cura. Silva Lusitana 4 (1996) 129-136
24. Santos M.N., Bragança M.H., and Casimiro P.P. Microrganismos associados à cortiça em diferentes fases da sua fileira. Silva Lusitana 13 (2005) 75-93
25. Seifert K.A., Samson R.A., deWaard J.R., Houbraken J., Lévesque C.A., Moncalvo J.-M., et al. Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proc. Natl. Acad. Sci. (USA) 104 (2007) 3901-3906
26. Serra R., Mendonça C., and Venâncio A. Ochratoxin A occurrence and production in Portuguese wine grapes at various stages of maturation. Int. J. Food Microbiol. 111 Suppl. 1 (2006) S35-S39
27. Silva S.P., Sabino M.A., Fernandes E.M., Correlo V.M., Boesel L.F., and Reis R.L. Cork: properties, capabilities and applications. Int. Mater. Rev. 50 (2005) 345-365
28. Sites J.W., and Marshall J.C. Delimiting species: a renaissance issue in systematic biology. Trends Ecol. Evol. 18 (2003) 462-470
29. Soares G.A.M., Basílio M.C., Tenreiro R., and San Romão M.V. Diversity of Penicillium spp. colonizing cork planks: a classical and molecular approach. In: Lima N., and Smith D. (Eds). Biological resource centres and the use of microbes (2003), Micoteca da Universidade do Minho, Braga 161-170
30. Swofford D.L. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4 (2003), Sinauer Associates, Sunderland, Massachusetts
31. Taylor J.W., Jacobson D.J., Kroken S., Kasuga T., Geiser D.M., Hibbett D.S., et al. Phylogenetic species recognition and species concepts in fungi. Fungal Genet. Biol. 31 (2000) 21-32
32. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALV: Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
33. Vega F.E., Posada F., Peterson S.W., Gianfagna T.J., and Chaves F. Penicillium species endophytic in coffee plants and ochratoxin A production. Mycologia 98 (2006) 31-42
34. Wilson D. Endophyte: the evolution of a term, and clarification of its use and definition. Oikos 73 (1995) 274-276