Penicillium coffeae, a new endophytic species isolated from a coffee plant and its phylogenetic relationship to P. fellutanum, P. thiersii and P. brocae based on parsimony analysis of multilocus DNA sequences

Mycologia

Volumn 97, Issue 3, 2005, Pages 659-666

  Peterson, Stephen W ^a   Vega, Fernando E ^b   Posada, Francisco ^b   Nagai, Chifumi ^c  

^a NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c HAWAII AGRICULTURE RESEARCH CENTER   (United States)

Author keywords

Molecular systematics; Penicillium atrovirens var nigrocastaneum; Penicillium ebenbitarianum; Penicillium indicum; Penicillium phoeniceum

Indexed keywords

FUNGUS; NEW SPECIES; TAXONOMY;

COFFEA ARABICA; PENICILLIUM; PENICILLIUM BROCAE; PENICILLIUM CHARLESII; PENICILLIUM CHERMESINUM; PENICILLIUM FELLUTANUM; PENICILLIUM THIERSII;

EID: 25444533325     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.1080/15572536.2006.11832796     Document Type: Article

References (41)

1. Agurell SL. 1964. Costaclavine from Penicillium chermesinum. Experientia 20:25-26.
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
3. Arnold AE, Maynard Z, Gilbert GS. 2001. Fungal endophytes in dicotyledonous neotropical trees: patterns of abundance and diversity. Mycol Res 105:1502-1507.
4. _, Mejía LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre EA. 2003. Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci USA 100:15649-15654.
5. Azevedo JL, Maccheroni Jr A, Pereira JO, de Araujo WL. 2000. Endophytic microorganisms: a review on insect control and recent advances on tropical plants. Electronic J Biotechnol 3:40-65.
6. Bacon CW, White Jr JF. 2000. Microbial Endophyte. New York: Marcel Dekker Inc. 487 p.
7. Batista LR, Chalfoun SM, Prado G, Freitas Schwan R, Wheals AE. 2003. Toxigenic fungi associated with processed (green) coffee beans (Coffea arabica L.). Int J Food Microbiol 85:293-300.
8. Bugni TS, Bernan VS, Greenstein M, Janso JE, Maiese WM, Mayne CL, Ireland CM. 2003. Brocaenols A-C: novel polyketides from a marine-derived Penicillium brocae. J Org Chem 68:2014-2017.
9. Cao LX, You JL, Zhou SN. 2002. Endophytic fungi from Musa acuminata leaves and roots in South China. World J Microbiol Biotechnol 18:169-171.
10. Clay K. 1988. Fungal endophytes of grasses: a defensive mutualism between plants and fungi. Ecology 69:10-16.
11. _. 1994. The potential role of endophytes in ecosystems. In: Bacon CW, White Jr JF, eds. Biotechnology of Endophytic Fungi of Grasses. Boca Raton, Florida: CRC Press Inc. p 73-86.
12. Cole RJ, Schweikert BJ. 2003. Handbook of Secondary Fungal Metabolites. Vols. I and II. New York: Academic Press.
13. _, Jarvis BB, Schweikert BJ. 2003. Handbook of Secondary Fungal Metabolites. Vol. III. New York: Academic Press.
14. Collado J, Platas G, González I, Peláez F. 1999. Geographical and seasonal influences on the distribution of fungal endophytes in Quercus ilex. New Phytol 144:525-532.
15. dos Santos RMG, Rodrigues-Fo E, Rocha WC, Teixeira MFS. 2003. Endophytic fungi from Melia azeradach. World J Microbiol Biotechnol 19:767-770.
16. Larran S, Monaco C, Alippi HE. 2001. Endophytic fungi in leaves of Lycopersicon esculentum Mill. World J Microbiol Biotechnol 17:181-184.
17. Logsdon JM. 2004. Worm genomes hold the smoking guns of intron gain. Proc Natl Acad Sci USA 101:11195-11196.
18. Maria GL, Sridhar KR. 2003. Endophytic fungal assemblage of two halophytes from west coast mangrove habitats, India. Czech Mycol 55:241-251.
19. Page RDM. 1996. TreeView: an application to display phylogenetic trees on personal computers. Computer Application in Bioscience 12:357-358.
20. Patterson RRM, Simmonds MSJ, Blaney WM. 1987. Mycopesticidal effects of characterized extracts of Penicillium isolates and purified secondary metabolites (including mycotoxins) on Drosophila melanogaster and Spodoptora littoralis. J Invertebr Path 50:124-133.
21. Peterson SW. 1992. Neosartorya pseudofischeri sp. nov. and its relationship to other species in Aspergillus section Fumigati. Mycol Res 96:547-554.
22. _. 2000. Phylogenetic analysis of Penicillium based on ITS and LSU-rDNA sequences. In: Samson RA, Pitt JI, eds. Classification of Penicillium and Aspergillus: integration of modern taxonomic methods. Reading, UK: Harwood Publishers. p 163-178.
23. _. 2004. Multilocus DNA sequence analysis shows that Penicillium biourgeianum is a distinct species closely related to P. brevicompactum and P. olsonii. Mycol Res 108:434-440.
24. _, Bayer EM, Wicklow DT. 2004. Penicillium thiersii, Penicillium angulare and Penicillium decaturense, new species isolated from wood-decay fungi in North America and their phylogenetic placement from multilocus DNA sequence analysis. Mycologia (In press).
25. _, Sigler L. 2002. Four new Penicillium species having Thysanophora-like melanized conidiophores. Mycol Res 106:1109-1118.
26. Pitt JI. 1980. The genus Penicillium and its teleomorphic states Eupenicillium and Talaromyces. New York: Academic Press. 634 p.
27. _, Samson RA, Frisvad JC. 2000. List of accepted species and their synonyms in the family Trichocomaceae. In: Samson RA, Pitt JI, eds. Classification of Penicillium and Aspergillus: integration of modern taxonomic methods. Reading, UK: Harwood Publishers. p 9-50.
28. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
29. Ramirez C. 1982. Manual and Atlas of the Penicillia. New York: Elsevier Biomedical Press. 874 p.
30. Raper KC, Thom C. 1949. A manual of the Penicillia. Baltimore, Maryland: Williams & Wilkins Co. 875 p.
31. Reynaud DT, Pimentel IC, Homechim M, Kania CE, Dykstra C. 2003. Fungos isolados dos grãos do café (Coffea arabica L. - Rubiaceae) variedade Mundo Novo. Estudios de Biología, Curitiba 25:49-54.
32. Ridgway R. 1912. Color Standards and Color Nomenclature. Washington, D.C.: Published by the author. 43 p., 53 plates.
33. Santamaría J, Bayman P. 2004. Fungal epiphytes and endophytes of coffee leaves (Coffea arabica). Microb Ecol (In press).
34. Shaukat SS, Siddiqui IA. 2001. Lantana camara in the soil changes the fungal community structure and reduces impact of Meloidogyne javanica on mungbean. Phytopath Mediterranea 40:245-252.
35. Spurr Jr HW, Welty RE. 1975. Characterization of endophytic fungi in healthy leaves of Nicotiana spp. Phytopathol 65:417-422.
36. Stolk AC, Samson RA. 1983. The ascomycete genus Eupenicillium and related Penicillium anamorphs. Studies Mycol 23:1-149.
37. Strobel GA. 2003. Endophytes as sources of bioactive products. Microbe Infect 5:535-544.
38. Swofford DL. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
39. Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal V: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
40. White TJ, Bruns TD, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal DNA for phylogenetics. In: Innes MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to the methods and applications. New York: Academic Press. p 315-322.
41. Yong Z, Guo L-A, Wu W-F. 2003. Identification of Taxus cuspidata Sieb. et Zucc. endophytic fungi - new species, species known and their metabolite. J Forest Res 14:290-294.