Recombination and linkage disequilibrium among mitochondrial genes in structured populations of the gynodioecious plant Silene vulgaris

Evolution

Volumn 62, Issue 4, 2008, Pages 823-832

  McCauley, David E ^a   Ellis, Jennifer R ^a  

^a VANDERBILT UNIVERSITY   (United States)

Author keywords

Gynodioecy; Linkage disequilibrium; Plant mitochondrial genome; Population structure; Recombination

Indexed keywords

ALLELE; DICOTYLEDON; GENOTYPE; GYNODIOECY; MITOCHONDRION; POLYMERASE CHAIN REACTION; POPULATION GENETICS; POPULATION STRUCTURE; RECOMBINATION;

ALLELE; ARTICLE; EUROPE; GENE; GENE LINKAGE DISEQUILIBRIUM; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; MITOCHONDRIAL GENE; NORTH AMERICA; SILENE;

ALLELES; EUROPE; GENES, MITOCHONDRIAL; GENES, PLANT; LINKAGE DISEQUILIBRIUM; NORTH AMERICA; RECOMBINATION, GENETIC; SILENE; VARIATION (GENETICS);

SILENE; SILENE VULGARIS;

EID: 41749112669     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00331.x     Document Type: Article

References (40)

1. Arimura, S., J. Yamamoto, G. P. Aida, M. Nakazono, and N. Tsutsumi. 2004. Frequent fusion and fission of plant mitochondria with unequal nucleoid distribution. Proc. Natl. Acad. Sci. USA 101 : 7805 7808.
2. Barkman, T. J., G. Chenery, J. R. McNeal, J. Lyons-Weiler, W. J. Elisens, G. Moore, A. D. Wolfe, and C. W. dePamphilis. 2000. Independent and combined analysis of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. Proc. Natl. Acad. Sci. USA 97 : 13166 13171.
3. Barr, C. M., S. R. Keller, P. K. Ingvarsson, D. B. Sloan, and D. R. Taylor. 2007. Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris. Mol. Biol. Evol. 24 : 1783 1791.
4. Budar, F., P. Touzet, and R. DePaepe. 2003. The nucleo-mitochondrial conflict in cytoplasmic male sterilities revisited. Genetica 117 : 3 16.
5. Burt, A., and R. Trivers. 2006. Genes in conflict. Harvard Univ. Press, Cambridge, MA.
6. Charlesworth, D., and V. Laporte. 1998. The male-sterility polymorphism of Silene vulgaris: analysis of genetic data from two populations and comparison with Thymus vulgaris. Genetics 150 : 1267 1282.
7. Doyle, J. J., and J. L. Doyle. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochemical Bull. 19 : 11 15.
8. Emery, S. N. 2001. Inbreeding Depression and Its Consequences in Silene vulgaris. Master's Dissertation. Vanderbilt Univ., Nashville, TN. 74 pp.
9. Frank, S. A. 1989. The evolutionary dynamics of cytoplasmic male sterility. Am. Nat. 133 : 345 376.
10. Hedrick, P. W. 2005a. Genetics of populations. Jones and Bartlett. Sunbury, MA. 737 pp.
11. Hedrick, P. W. 2005b. A standardized genetic differentiation measure. Evolution 59 : 1633 1638.
12. Houliston, G. J., and M. S. Olson. 2006. Independent and non-neutral evolution of organellar genes in Silene vulgaris. Genetics 174 : 1985 1994.
13. Hudson, R. R., and N. L. Kaplan. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111 : 147 164.
14. Klaas, A. L., and M. S. Olson. 2006. Spatial distributions of cytoplasmic types and sex expression in Alaskan populations of Silene acaulis. Int. J. Plant Sci. 167 : 179 189.
15. Kuobo, T., and T. Mikami. 2007. Organization and variation of angiosperm mitochondrial genome. Physiologia Plantarum 129 : 6 13.
16. Logan, D. C. 2003. Mitochondrial dynamics. New Phytol. 160 : 463 473.
17. Logan, D. C. 2006. Plant mitochondrial dynamics. Biochimica et Biophysica Acta 1763 : 430 441.
18. Lynch, M., and J. L. Blanchard. 1998. Deleterious mutation accumulation in organelle genomes. Genetica 102/103 : 29 39.
19. McCauley, D. E. 1998. The genetic structure of a gynodioecious plant: nuclear and cytoplasmic genes. Evolution 52 : 255 260.
20. McCauley, D. E., and M. S. Olson. 2003. Associations among cytoplasmic molecular markers, gender, and components of fitness in Silene vulgaris, a gynodioecious plant. Mol. Ecol. 12 : 777 787.
21. McCauley, D. E., R. A. Smith, J. D. Lisenby, and C. Hsieh. 2003. The hierarchical spatial distribution of chloroplast DNA polymorphism across the introduced range of Silene vulgaris. Mol. Ecol. 12 : 3227 3235.
22. McCauley, D. E., M. F. Bailey, N. A. Sherman, and M. Z. Darnell. 2005. Evidence for paternal transmission and heteroplasmy in the mitochondrial genome of Silene vulgaris, a gynodioecious plant. Heredity 95 : 50 58.
23. Mackenzie, S., and L. McIntosh. 1999. Higher plant mitochondria. Plant Cell 11 : 571 585.
24. Olson, M. S., and D. E. McCauley. 2000. Linkage disequilibrium and phylogenetic congruence between chloroplast and mitochondrial haplotypes in Silene vulgaris. Proc. R. Soc. Lond. B 267 : 1801 1808.
25. Olson, M. S., and D. E. McCauley. 2002. Mitochondrial DNA diversity, population structure, and gender association in the gynodioecious plant Silene vulgaris. Evolution 56 : 253 262.
26. Palmer, J. D., and L. A. Hebron. 1988. Plant mitochondrial DNA evolved rapidly in structure, but slowly in sequence. J. Mol. Evol. 28 : 87 97.
27. Palmer, J. D., and C. Shields. 1985. Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307 : 437 440.
28. Petit, R. J., J. Duminil, S. Fineschi, A. Hampe, D. Salvinin, and G. G. Vendramin. 2005. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol. Ecol. 14 : 689 701.
29. Petterson, M. W. 1992. Advantages of being a specialist female in gynodioecious Silene vulgaris S. L. (Caryophyllaceae). Am. J. Bot. 79 : 1389 1395.
30. Posada, D., K. A. Crandall, and E. C. Holmes. 2002. Recombination in evolutionary genomics. Ann. Rev. Genetics 36 : 75 97.
31. Rand, D. M. 2001. The units of selection on mitochondrial DNA. Ann. Rev. Ecol. Syst. 32 : 415 448.
32. Runyeon-Lager, H., and H. C. Prentice. 2000. The morphometric variation in a hybrid zone between the weed Silene vulgaris and the endemic Silene uniflora ssp. petraea (Caryophyllaceae), on the Baltic island of Oland. Can. J. Bot. 78 : 1384 1397.
33. Schneider, S., D. Roessli and L. Excoffier. 2000. Arelequin version 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, Univ. of Geneva, Geneva, Switzerland.
34. Sheahan, M.G, D. W. McCurdy, and R. J. Rose. 2005. Mitochondria as a connected population: ensuring continuity of the mitochondrial genome during plant cell differentiation through massive mitochondrial fusion. Plant J. 44 : 744 755.
35. Sokal, R. R., and F. J. Rohlf. 1995. Biometry, 3rd ed. W.H. Freeman, New York, NY.
36. Städler, T., and L. F. Delph. 2002. Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant. Proc. Natl. Acad. Sci. USA 99 : 11730 11735.
37. Taylor, D. R. and S. R. Keller. 2007. Historical range expansion determines the phylogenetic diversity introduced during contemporary species invasion. Evolution 61 : 334 345.
38. Taylor, D. R., M. S. Olson, and D. E. McCauley. 2001. A quantitative genetic analysis of nuclear-cytoplasmic male sterility in structured populations of Silene vulgaris. Genetics 158 : 833 841.
39. Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38 : 1358 1370.
40. Welch, M. E., M. Z. Darnell, and D. E. McCauley. 2006. Variable populations within variable populations: quantifying mitochondrial heteroplasmy in natural populations of the gynodioecious plant Silene vulgaris. Genetics 174 : 829 837.