Characterization of a temperature-sensitive mutation that impairs the function of yeast tRNA nucleotidyltransferase

Yeast

Volumn 25, Issue 3, 2008, Pages 219-233

  Shan, Xunying ^a   Russell, Tara A ^b   Paul, Scott M ^b   Kushner, David B ^b   Joyce, Paul B M ^a  

^a Dept of Electrical and Computer Engineering   (Canada)

^b DICKINSON COLLEGE   (United States)

Author keywords

CCA1; Saccharomyces cerevisiae; Temperature sensitive mutant; TRNA nucleotidyltransferase

Indexed keywords

ADENINE; FUNGAL RNA; GLUTAMINE; GUANINE; HISTIDINE; LYSINE; PHENYLALANINE; TRANSFER RIBONUCLEIC ACID NUCLEOTIDYLTRANSFERASE; TRANSFER RNA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BIOCHEMISTRY; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVITY; ENZYME STABILITY; ENZYME STRUCTURE; FUNGAL STRAIN; GENE MUTATION; HEAT SENSITIVITY; MELTING POINT; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN STRUCTURE; RESIDUE ANALYSIS; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; WILD TYPE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CODON; ENZYME STABILITY; MOLECULAR SEQUENCE DATA; PHENOTYPE; POINT MUTATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; RNA NUCLEOTIDYLTRANSFERASES; RNA, TRANSFER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; SPECTRUM ANALYSIS; STRUCTURE-ACTIVITY RELATIONSHIP; TEMPERATURE;

SACCHAROMYCES CEREVISIAE;

EID: 41549141776     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1582     Document Type: Article

References (32)

1. Aebi M, Kirchner G, Chen JY, et al. 1990. Isolation of a temperature-sensitive mutant with an altered tRNA nucleotidyltransferase and cloning of the gene encoding tRNA nucleotidyltransferase in the yeast Saccharomyces cerevisiae. J Biol Chem 265: 16216-16220.
2. Augustin MA, Reichert AS, Betat H, et al. 2003. Crystal structure of the human CCA-adding enzyme: insights into template-independent polymerization. J Mol Biol 328: 985-994.
3. Ausubel FM, Brent R, Kingston RE, et al. (eds). 1989. Current Protocols in Molecular Biology. Wiley: New York.
4. Chen JY, Joyce PBM, Wolfe CL, et al. 1992. Cytoplasmic and mitochondrial tRNA nucleotidyltransferase activities are derived from the same gene in the yeast Saccharomyces cerevisiae. J Biol Chem 267: 14879-14883.
5. Cho HD, Oyelere AK, Strobel SA, et al. 2003. Use of nucleotide analogs by class I and class II CCA-adding enzymes (tRNA nucleotidyltransferase): deciphering the basis for nucleotide selection. RNA 9: 970-981.
6. Cho HD, Chen Y, Varani G, et al. 2006. A model for C74 addition by CCA-adding enzymes: C74 addition, like C75 and A76 addition, does not involve tRNA translocation. J Biol Chem 281: 9801-9811.
7. Cho HD, Verlinde CLMJ, Weiner AM. 2007. Reengineering CCA-adding enzymes to function as (U,G)- or dCdCdA-adding enzymes or poly(C,A) and poly(U,G) polymerases. Proc Natl Acad Sci USA 104: 54-59.
8. DeLano WL. 2002. The PyMOL Molecular Graphics System. DeLano Scientific: Palo Alto, CA.
9. Feng W, Hopper AK. 2002. A Los1p-independent pathway for nuclear export of intronless tRNAs in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 99: 5412-5417.
10. Gasch AP, Spellman PT, Kao CM, et al. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257.
11. Hashimoto K, Kato Z, Nagase T, et al. 2005. Molecular mechanism of a temperature-sensitive phenotype in peroxisomal biogenesis disorder. Pediatr Res 58: 263-269.
12. Hill JE, Myers AM, Koerner TJ, et al. 1986. Yeast - E. coli shuttle vectors with multiple unique restriction sites. Yeast 2: 163-167.
13. Janda M, Ahlquist P. 1993. RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in S. cerevisiae. Cell 72: 961-970.
14. Jona G, Livi LL, Gileadi O. 2002. Mutations in the RING domain of TFB3, a subunit of yeast transcription factor HH, reveal a role in cell cycle progression. J Biol Chem 277: 39409-39416.
15. Li F, Xiong Y, Wang J, et al. 2002. Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP. Cell 111: 815-824.
16. Okabe M, Tomita K, Ishitani R, et al. 2003. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. EMBO J 22: 5918-5927.
17. Peltz SW, Donahue JL, Jacobson A. 1992. A mutation in the tRNA nucleotidyltransferase gene promotes stabilization of mRNAs in Saccharomyces cerevisiae. Mol Cell Biol 12: 5778-5784.
18. Richards FM. 1974. The interpretation of protein structures: total volume, group volume distributions and packing density. J Mol Biol 82: 1-14.
19. Rosset R, Monier R. 1965. Instability of the terminal 3′-hydroxy sequence of transfer RNA in microorganisms. I. Turnover of terminal AMP in Saccharomyces cerevisiae. Biochim Biophys Acta 108: 376-384.
20. Schwede T, Kopp J, Guex N, et al. 2003. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31: 3381-3385.
21. Shanmugam K, Hanic-Joyce PJ, Joyce PBM. 1996. Purification and characterization of a tRNA nucleotidyltransferase from Lupinus albus and functional complementation of a yeast mutation by the corresponding cDNA. Plant Mol Biol 30: 281-295.
22. Sherman F. 1991. Getting started with yeast. Methods Enzymol 194: 3-21.
23. Sikorski RS, Hieter P. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
24. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
25. Tomita K, Fukai S, Ishitani R, et al. 2004. Structural basis for template-independent RNA polymerization. Nature 430: 700-704.
26. Tomita K, Ishitani R, Fukai S, et al. 2006. Complete crystallographic analysis of the dynamics of CCA sequence addition. Nature 443: 956-960.
27. Vijayraghavan U, Company M, Abelson J. 1989. Isolation and characterization of pre-mRNA splicing mutants of Saccharomyces cerevisiae. Genes Dev 3: 1206-1216.
28. Weiner AM. 2004. tRNA maturation: RNA polymerization without a nucleic acid template. Curr Biol 14: R883-885.
29. Wolfe CL, Lou YC, Hopper AK, et al. 1994. Interplay of heterogeneous transcriptional start sites and translational selection of AUGs dictate the production of mitochondrial and cytosolic/nuclear tRNA nucleotidyltransferase from the same gene in yeast. J Biol Chem 269: 13361-13366.
30. Xiong Y, Li F, Wang J, et al. 2003. Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes. Mol Cell 12: 1165-1172.
31. Xiong Y, Steitz TA. 2004. Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template. Nature 430: 640-645.
32. Yue D, Weiner AM, Maizels N. 1998. The CCA-adding enzyme has a single active site. J Biol Chem 273: 29693-29700.