-
1
-
-
0037216801
-
Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions
-
Alexeeva S, Hellingwerf KJ, Joost Teixeira de Mattos M (2003) Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions. J Bacteriol 185:204-209
-
(2003)
J Bacteriol
, vol.185
, pp. 204-209
-
-
Alexeeva, S.1
Hellingwerf, K.J.2
De Joost Teixeira Mattos, M.3
-
3
-
-
0036899077
-
Stationary phase gene regulation: What makes an Escherichia coli promoter sigmaS-selective?
-
Aronis HR (2002b) Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective? Curr Opin Microbiol 5:591-595
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 591-595
-
-
Aronis, H.R.1
-
4
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006.0008
-
(2006)
Mol Syst Biol
, vol.2
, pp. 20060008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
7
-
-
0030029512
-
FruR mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coli
-
Bledig SA, Ramseier TM, Saier MH Jr (1996) FruR mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coli. J Bacteriol 178:280-283
-
(1996)
J Bacteriol
, vol.178
, pp. 280-283
-
-
Bledig, S.A.1
Ramseier, T.M.2
Saier Jr., M.H.3
-
8
-
-
0035152663
-
Oxygen- and growth rate-dependent regulation of Escherichia coli fumarase (FumA, FumB, and FumC) activity
-
Chen DP, Tseng CP, Lin HT, Sun CF (2001) Oxygen- and growth rate-dependent regulation of Escherichia coli fumarase (FumA, FumB, and FumC) activity. J Bacteriol 183:461-467
-
(2001)
J Bacteriol
, vol.183
, pp. 461-467
-
-
Chen, D.P.1
Tseng, C.P.2
Lin, H.T.3
Sun, C.F.4
-
9
-
-
0026096917
-
Regulation of the acetate operon in Escherichia coli: Purification and functional characterization of the IclR repressor
-
Cortay JC, Negre D, Galinier A, Duclos B, Perriere G, Cozzone AJ (1991) Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor. EMBO 10:675-679
-
(1991)
EMBO
, vol.10
, pp. 675-679
-
-
Cortay, J.C.1
Negre, D.2
Galinier, A.3
Duclos, B.4
Perriere, G.5
Cozzone, A.J.6
-
10
-
-
0002961439
-
Tricarboxylic acid cycle and glyoxylate bypass
-
2 ASM Press Washington, DC
-
Cronan JE, LaPorte DJ (1996) Tricarboxylic acid cycle and glyoxylate bypass. In: Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella: cellular and molecular biology, 2nd edn. ASM Press, Washington, DC, pp 208-211
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 208-211
-
-
Cronan, J.E.1
Laporte, D.J.2
Neidhardt, F.C.3
Curtiss III, R.4
Ingraham, J.L.5
Lin, E.C.C.6
Low, K.B.7
Magasanik, B.8
Reznikoff, W.S.9
Riley, M.10
Schaechter, M.11
Umbarger, H.E.12
-
11
-
-
0023654118
-
Molecular cloning and over-expression of the glyoxylate bypass operon from Escherichia coli ML308
-
El-Mansi EMT, MacKintosh C, Duncan K, Holms WH, Nimmo HG (1987) Molecular cloning and over-expression of the glyoxylate bypass operon from Escherichia coli ML308. Biochem J 242:661-665
-
(1987)
Biochem J
, vol.242
, pp. 661-665
-
-
El-Mansi, E.M.T.1
MacKintosh, C.2
Duncan, K.3
Holms, W.H.4
Nimmo, H.G.5
-
12
-
-
9344239860
-
Regulated expression of a repressor protein: FadR activates iclR
-
Gui L, Sunnarborg A, LaPorte DC (1996) Regulated expression of a repressor protein: FadR activates iclR. J Bacteriol 178:4704-4709
-
(1996)
J Bacteriol
, vol.178
, pp. 4704-4709
-
-
Gui, L.1
Sunnarborg, A.2
Laporte, D.C.3
-
13
-
-
0029810991
-
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: Intracellular levels of four species of sigma subunit under various growth conditions
-
Jishage M, Iwata A, Ueda S, Ishihama A (1996) Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J Bacteriol 178:5447-5451
-
(1996)
J Bacteriol
, vol.178
, pp. 5447-5451
-
-
Jishage, M.1
Iwata, A.2
Ueda, S.3
Ishihama, A.4
-
14
-
-
0033572854
-
Biochemical and spectroscopic characterization of Escherichia coli aconitases (AcnA and AcnB
-
Jordan PA, Tang Y, Bradbury AJ, Thomson AJ, Guest JR (1999) Biochemical and spectroscopic characterization of Escherichia coli aconitases (AcnA and AcnB). Biochem J 344:739-746
-
(1999)
Biochem J
, vol.344
, pp. 739-746
-
-
Jordan, P.A.1
Tang, Y.2
Bradbury, A.J.3
Thomson, A.J.4
Guest, J.R.5
-
15
-
-
0141429051
-
Gene Expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR
-
Kabir MM, Shimizu K (2003) Gene Expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR. J Biotechnol 105:11-31
-
(2003)
J Biotechnol
, vol.105
, pp. 11-31
-
-
Kabir, M.M.1
Shimizu, K.2
-
16
-
-
0036175587
-
The flavoenzyme ferredoxin (flavodoxin)-NADP(H) reductase modulates NADP(H) homeostasis during the soxRS response of Escherichia coli
-
Krapp AR, Rodriguez RE, Poli HO, Paladini DH, Palatnik JF, Carrillo N (2002) The flavoenzyme ferredoxin (flavodoxin)-NADP(H) reductase modulates NADP(H) homeostasis during the soxRS response of Escherichia coli. J Bacteriol 184:1474-1480
-
(2002)
J Bacteriol
, vol.184
, pp. 1474-1480
-
-
Krapp, A.R.1
Rodriguez, R.E.2
Poli, H.O.3
Paladini, D.H.4
Palatnik, J.F.5
Carrillo, N.6
-
17
-
-
0033927843
-
Regulation of acetyl coenzyme a synthetase in Escherichia coli
-
Kumari S, Beatty CM, Browning DF, Busby SJW, Simel EJ, Hovel-Miner G, Wolfe AJ (2000) Regulation of acetyl coenzyme a synthetase in Escherichia coli. J Bacteriol 182:4173-4179
-
(2000)
J Bacteriol
, vol.182
, pp. 4173-4179
-
-
Kumari, S.1
Beatty, C.M.2
Browning, D.F.3
Busby, S.J.W.4
Simel, E.J.5
Hovel-Miner, G.6
Wolfe, A.J.7
-
18
-
-
6044228192
-
s-dependent genes and identification of their promoter sequences
-
S- dependent genes and identification of their promoter sequences. J Bacteriol 186:7186-7195
-
(2004)
J Bacteriol
, vol.186
, pp. 7186-7195
-
-
Lacour, S.1
Landini, P.2
-
19
-
-
15944366483
-
Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses
-
Levanon S, San KY, Bennett GN (2005) Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses. Biotechnol Bioeng 89:556-564
-
(2005)
Biotechnol Bioeng
, vol.89
, pp. 556-564
-
-
Levanon, S.1
San, K.Y.2
Bennett, G.N.3
-
21
-
-
33746718715
-
Acetyl-CoA synthetase overexpression in Escherichia coli demonstrates more efficient acetate assimilation and lower acetate accumulation: A potential tool in metabolic engineering
-
Lin H, Castro NM, Bennett GN, San KY (2006) Acetyl-CoA synthetase overexpression in Escherichia coli demonstrates more efficient acetate assimilation and lower acetate accumulation: a potential tool in metabolic engineering. Appl Microbiol Biotechnol 71:870-874
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 870-874
-
-
Lin, H.1
Castro, N.M.2
Bennett, G.N.3
San, K.Y.4
-
22
-
-
0026778382
-
Fumarase C, the stable fumarase of Escherichia coli, is controlled by the soxRS regulon
-
Liochev SI, Fridovich I (1992) Fumarase C, the stable fumarase of Escherichia coli, is controlled by the soxRS regulon. Proc Natl Acad Sci USA 89:5892-5896
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5892-5896
-
-
Liochev, S.I.1
Fridovich, I.2
-
23
-
-
0042932438
-
Comparison of oxidative stress response genes in aerobic Escherichia coli fermentations
-
Lu C, Bentley WE, Rao G (2003) Comparison of oxidative stress response genes in aerobic Escherichia coli fermentations. Biotechnol Bioeng 83:864-870
-
(2003)
Biotechnol Bioeng
, vol.83
, pp. 864-870
-
-
Lu, C.1
Bentley, W.E.2
Rao, G.3
-
25
-
-
0028856397
-
Oxygen, iron, carbon, and super-oxide control of the fumarase fumA and fumC genes of Escherichia coli: Role of the arcA, fnr, and soxR gene products
-
Park SJ, Gunsalus RP (1995) Oxygen, iron, carbon, and super-oxide control of the fumarase fumA and fumC genes of Escherichia coli: role of the arcA, fnr, and soxR gene products. J Bacteriol 177:6255-6262
-
(1995)
J Bacteriol
, vol.177
, pp. 6255-6262
-
-
Park, S.J.1
Gunsalus, R.P.2
-
26
-
-
13244259382
-
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12
-
Patten CL, Kirchhof MG, Schertzberg MR, Morton RA, Schellhorn HE (2004) Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol Gen Genomics 272:580-591
-
(2004)
Mol Gen Genomics
, vol.272
, pp. 580-591
-
-
Patten, C.L.1
Kirchhof, M.G.2
Schertzberg, M.R.3
Morton, R.A.4
Schellhorn, H.E.5
-
27
-
-
0037391699
-
Global metabolic regulation analysis for Escherichia coli K-12 based on protein expression by 2D electrophoresis and enzyme activity measurement
-
Peng L, Shimizu K (2003) Global metabolic regulation analysis for Escherichia coli K-12 based on protein expression by 2D electrophoresis and enzyme activity measurement. Appl Microbiol Biotechnol 61:163-178
-
(2003)
Appl Microbiol Biotechnol
, vol.61
, pp. 163-178
-
-
Peng, L.1
Shimizu, K.2
-
28
-
-
28844498663
-
Effect of fadR gene knockout on the metabolism of Escherichia coli based on analyses of protein expressions, enzyme activities and intracellular metabolite concentrations
-
Peng L, Shimizu K (2006) Effect of fadR gene knockout on the metabolism of Escherichia coli based on analyses of protein expressions, enzyme activities and intracellular metabolite concentrations. Enzyme Microb Technol 38:512-520
-
(2006)
Enzyme Microb Technol
, vol.38
, pp. 512-520
-
-
Peng, L.1
Shimizu, K.2
-
29
-
-
17644369246
-
Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli
-
Perrenoud A, Sauer U (2005) Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J Bacteriol 187:3171-3179
-
(2005)
J Bacteriol
, vol.187
, pp. 3171-3179
-
-
Perrenoud, A.1
Sauer, U.2
-
30
-
-
33745210122
-
Effect of rpoS gene knockout on the metabolism of Escherichia coli during exponential growth phase and early stationary phase based on gene expression, enzyme activities and intracellular metabolite concentrations
-
Rahman M, Hasan MR, Oba T, Shimizu K (2006) Effect of rpoS gene knockout on the metabolism of Escherichia coli during exponential growth phase and early stationary phase based on gene expression, enzyme activities and intracellular metabolite concentrations. Biotechnol Bioeng 94:585-595
-
(2006)
Biotechnol Bioeng
, vol.94
, pp. 585-595
-
-
Rahman, M.1
Hasan, M.R.2
Oba, T.3
Shimizu, K.4
-
31
-
-
1542265814
-
13C-labeling experiments together with measurements of enzyme activities and intracellular metabolite concentrations
-
13C-labeling experiments together with measurements of enzyme activities and intracellular metabolite concentrations. Appl Microbiol Biotechnol 63:407-417
-
(2004)
Appl Microbiol Biotechnol
, vol.63
, pp. 407-417
-
-
Siddiquee, K.A.Z.1
Arauzo-Bravo, M.J.2
Shumizu, K.3
-
32
-
-
0004155427
-
-
W. H. Freeman and Company New York
-
Stryer L (1988) Biochemistry. W. H. Freeman and Company, New York, pp 511-512
-
(1988)
Biochemistry
, pp. 511-512
-
-
Stryer, L.1
-
33
-
-
0036225829
-
Escherichia coli aconitases and oxidative stress: Post-transcriptional regulation of sodA expression
-
Tang Y, Quail MA, Artymiuk PJ, Guest JR, Green J (2002) Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression. Microbiol 148:1027-1037
-
(2002)
Microbiol
, vol.148
, pp. 1027-1037
-
-
Tang, Y.1
Quail, M.A.2
Artymiuk, P.J.3
Guest, J.R.4
Green, J.5
-
34
-
-
0037214441
-
Contrasting sensitivities of Escherichia coli aconitases a and B to oxidation and iron depletion
-
Varghese S, Tang Y, Imlay JA (2003) Contrasting sensitivities of Escherichia coli aconitases A and B to oxidation and iron depletion. J Bacteriol 185:221-230
-
(2003)
J Bacteriol
, vol.185
, pp. 221-230
-
-
Varghese, S.1
Tang, Y.2
Imlay, J.A.3
-
35
-
-
10044241658
-
RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis
-
Vijaykumar SRV, Kirchhof MG, Patten CL, Schellhorn HE (2004) RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. J Bacteriol 186:8499-8507
-
(2004)
J Bacteriol
, vol.186
, pp. 8499-8507
-
-
Vijaykumar, S.R.V.1
Kirchhof, M.G.2
Patten, C.L.3
Schellhorn, H.E.4
-
36
-
-
14244256556
-
s-dependent genes, promoters, and sigma factor selectivity
-
S-dependent genes, promoters, and sigma factor selectivity. J Bacteriol 187:1591-1603
-
(2005)
J Bacteriol
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
37
-
-
2442545374
-
The effect of pfl knockout on the metabolism for optically pure D-lactate production by Escherichia coli
-
Zhu J, Shimizu K (2004) The effect of pfl knockout on the metabolism for optically pure D-lactate production by Escherichia coli. Appl Microbiol Biotechnol 64:367-375
-
(2004)
Appl Microbiol Biotechnol
, vol.64
, pp. 367-375
-
-
Zhu, J.1
Shimizu, K.2
|