Relationship between the excited state relaxation paths of rhodopsin and isorhodopsin

Journal of the American Chemical Society

Volumn 130, Issue 11, 2008, Pages 3382-3388

  Strambi, Angela ^a,d   Coto, Pedro B ^a,b   Frutos, Luis Manuel ^a   Ferré, Nicolas ^c   Olivucci, Massimo ^b,d  

^a UNIVERSITY OF SIENA   (Italy)

^b UNIVERSITY OF VALENCIA   (Spain)

^c UMR 6517   (France)

^d BOWLING GREEN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PIGMENTS DECAY; RETINAL CHROMOPHORE; RHODOPSIN;

EXCITED STATES; MOLECULAR MECHANICS; PIGMENTS; POTENTIAL ENERGY; QUANTUM CHEMISTRY; RELAXATION PROCESSES;

CHROMOPHORES;

ISORHODOPSIN; RHODOPSIN; UNCLASSIFIED DRUG;

AB INITIO CALCULATION; ARTICLE; CHROMATOPHORE; ISOMERIZATION; MOLECULAR MECHANICS; QUANTITATIVE ANALYSIS; QUANTUM MECHANICS; SPECTROSCOPY;

COMPUTER SIMULATION; LIGHT; MODELS, CHEMICAL; QUANTUM THEORY; RHODOPSIN;

EID: 41549105453     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0749082     Document Type: Article

References (47)

1. Mathies, R. A.; Lugtenburg, J. In Handbook of Biological Physics; Stavenga, D. G., Ed.; Elsevier: New York, 2000; Vol. 3.
2. Kandori, H.; Shichida, Y.; Yoshizawa, T. Biochemistry (Moscow) 2001, 66, 1197-1209.
3. Warshel, A. Nature 1976, 260, 679-683.
4. Honig, B. Annu. Rev. Phys. Chem. 1978, 29, 31-57.
5. Birge, R. R. Annu. Rev. Biophys. Bioeng 1981, 10, 315-354.
6. Fan, J.; Rohrer, B.; Moiseyev, G.; Ma, J.; Crouch, R. K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 13662-13667.
7. Schoenlein, R. W.; Peteanu, L. A.; Wang, Q.; Mathies, R. A.; Shank, C. V. J. Phys. Chem. 1993, 97, 12087-12092.
8. Hurley, J. B.; Ebrey, T. G.; Honig, B.; Ottolenghi, M. Nature 1977, 270, 540-542.
9. Yoshizawa, Y.; Wald, G. Nature (London) 1963, 197, 1279-1286.
10. Schick, G. A.; Cooper, T. M.; Holloway, R. A.; Murray, L. P.; Birge, R. R. Biochemistry 1987, 26, 2556-2562.
11. Hug, S. J.; Lewis, J. W.; Kliger, D. S. J. Am. Chem. Soc. 1988, 110, 1998-1999.
12. Wanko, M.; Hoffmann, M.; Strodel, P.; Koslowski, A.; Thiel, W.; Neese, F.; Frauenheim, T.; Elstner, M. J. Phys. Chem. B 2005, 109, 3606-3615.
13. Andruniów, T.; Ferré, N.; Olivucci, M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 17908-17913.
14. Verdegem, P. J. E.; Bovee-Geurts, P. H. M.; Grip, W. J. d.; Lugtenburg, J.; Groot, H. J. M. d. Biochemistry 1999, 38, 11316-11324.
15. Teller, D. C.; Okada, T.; Benke, C. A.; Palczewski, K.; Stenkamp, R. E. Biochemistry 2001, 40, 7761-7772.
16. Kukura, P.; McCamant, D. W.; Yoon, S.; Wandshneider, D. B.; Mathies, R. A. Science 2005, 310, 1006-1009.
17. Nakamichi, H.; Okada, T. Angew. Chem., Int. Ed. 2006, 45, 4270-4273.
18. Schreiber, M.; Sugihara, M.; Okada, T.; Buss, V. Angew. Chem., Int. Ed. 2006, 45, 4274-4277.
19. Coto, P. B.; Strambi, A.; Ferré, N.; Olivucci, M. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 17154-17159.
20. Mathies, R. A.; Stryer, L. Proc. Natl. Acad. Sci. U.S.A. 1976, 73, 2169-2173.
21. Frutos, L. M.; Andruniów, T.; Santoro, F.; Ferré, N.; Olivucci, M. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 7764-7769.
22. Ferré, N.; Olivucci, M. J. Am. Chem. Soc. 2003, 125, 6868-6869.
23. Singh, U. C.; Kollman, P. A. J. Comput. Chem. 1986, 7, 718-730.
24. Ferré, N.; Olivucci, M. Theochem 2003, 632, 71-82.
25. Ferré, N.; Cembran, A.; Garavelli, M.; Olivucci, M. Theor. Chem. Acc. 2004, 112, 335-341.
26. Frisch, M. J.; et al. Gaussian 03. revision C.02; Gaussian, Inc.: Wallingford, CT, 2004.
27. Ponder, J. W.; Richards, F. M. J. Comput. Chem. 1987, 8, 1016-1024.
28. Fahmy, K.; Jager, F.; Beck, M.; Zvyaga, T. A.; Sakmar, T. P.; Siebert, F. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 10206-10210.
29. Karlström, G.; Lindh, R.; Malmqvist, P.-Å.; Roos, B. O.; Ryde, U.; Veryazov, V.; Widmark, P.-O.; Cossi, M.; Schimmelpfennig, B.; Neogrády, P.; Seijo, L. Comput. Mater. Sci. 2003, 28.
30. Besler, B.; Merz, K.; Kollman, P. J. Comput. Chem. 1985, 11, 431-439.
31. Okada, T.; Fujiyoshi, Y.; Silow, M.; Navarro, J.; Landau, E. M.; Shichida, Y. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5982-5987.
32. Strambi, A.; Coto, P. B.; Ferré, N.; Olivucci, M. Theor. Chem. Acc. 2007, 118, 185-191.
33. Okada, T.; Sugihara, M.; Bondar, A. N.; Elstner, M.; Entel, P.; Buss, V. J. Mol. Biol. 2004, 342, 571-583.
34. Atchity, G. J.; Xantheas, S. S.; Ruendeberg, K. J. J. Chem. Phys. 1991, 95, 1862-1876.
35. Yarkony, D. R. Rev. Mod. Phys. 1996, 68, 985-1013.
36. Nakamichi, H.; Okada, T. Photochem. Photobiol. 2007, 83, 232-235.
37. Sekharan, S.; Sugihara, M.; Weingart, O.; Okada, T.; Buss, V. J. Am. Chem. Soc. 2007, 129, 1052-1054.
38. Warshel, A.; Barboy, N. J. Am. Chem. Soc. 1982, 104, 1469-1476.
39. Cooper, A. FEBS Lett. 1979, 100, 382-384.
40. Randall, C. E.; Lewis, J. W.; Hug, S. J.; Björling, S. C.; Eisner-Shanas, I.; Friedman, N.; Ottolenghi, M.; Sheves, M.; Kliger, D. S. J. Am. Chem. Soc. 1991, 113, 3473-3485.
41. Spalink, J. D.; Reynolds, A. H.; Rentzepis, P. M.; Sperling, W.; Applebury, M. L. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 1887-1891.
42. Kochendoerfer, G. G.; Mathies, R. A. J. Phys. Chem. 1996, 100, 14526-14532.
43. Schoenlein, R. W.; Peteanu, L. A.; Wang, Q.; Mathies, R. A.; Shank, C. V. J. Phys. Chem. 1993, 97, 12087-12092.
44. Migani, A.; Sinicropi, A.; Ferré, N.; Cembran, A.; Garavelli, M.; Olivucci, M. Faraday Discuss. 2004, 127, 179-191.
45. Peteanu, L. A.; Schoenlein, R. W.; Wang, Q.; Mathies, R. A.; Shank, C. V. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 11762-11766.
46. Warshel, A.; Chu, Z. T. J. Phys. Chem. B 2001, 105, 9857-9871.
47. Weingart, O.; Schapiro, I.; Buss, V. J. Phys. Chem. B 2007, 111, 3782-3788.